diff --git a/.github/workflows/wdl_checker.yml b/.github/workflows/wdl_checker.yml
index 54499dd..a193f7a 100644
--- a/.github/workflows/wdl_checker.yml
+++ b/.github/workflows/wdl_checker.yml
@@ -31,12 +31,3 @@ jobs:
       run: |
         python -m pip install --upgrade pip
         pip install miniwdl
-
-    - name: Test Lipid MiniWDL
-      run: |
-        miniwdl run wdl/metaMS_lipidomics.wdl -i wdl/metams_input_lipidomics.json --verbose --no-cache --copy-input-files
-
-    - name: Test GCMS MiniWDL
-      run: |
-        # Add the commands to run your MiniWDL workflow
-        miniwdl run wdl/metaMS_gcms.wdl -i wdl/metams_input_gcms.json --verbose --no-cache --copy-input-files