Note The EBI Cloud Portal has been retired and its code base is no longer updated. This includes the collaboration with the PRIDE team.
aka Elixir QC EBI Qcloud TSI Cloud Portal
The workflow uses nextflow and makes ample use of the container feature. Example use:
../nextflow/nextflow run pxd2qc.nf -c ../nextflow/mynextflow.config -profile local --input PXD011124
based on the generic server Portal app
Input from PRIDE
Workflow inputs are PRIDE submission accessions (PXD). For starters, we will restrict ourselves to Q exactive thermo raw files.