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CHANGELOG.md

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CHANGELOG

v1.3.10 (2024-12-19)

v1.3.9 (2024-12-06)

Bug Fixes

  • Investigation file parse error and ruff is used for formatting and linting. (1918ee6)

v1.3.8 (2024-12-06)

Refactoring

  • File formats are updated with isort and black. (187b100)

  • Column add method is defined. (428b7ff)

  • Refactor code to export modules (cadbafd)

v1.3.7 (2024-12-01)

Bug Fixes

  • Get_study_metadata_path method update (75d221c)

v1.3.6 (2024-11-26)

v1.3.5 (2024-11-21)

Bug Fixes

  • Strip qoutation characters while reading ISA table file (b6aa029)

v1.3.4 (2024-11-20)

Refactoring

  • Upload submission refactor and create study utility method (c9ea043)

v1.3.3 (2024-11-20)

Bug Fixes

  • Update search pattern to find new lines in cells (bcf703a)

  • Ontology source parse errors (1d68f25)

v1.3.2 (2024-11-20)

Bug Fixes

  • Fix isatable read errors (dc61316)

v1.3.1 (2024-11-14)

Bug Fixes

Refactoring

  • New local validation endpoint accepts user's api-token (4a1c0b8)

v1.3.0 (2024-11-14)

v1.2.2 (2024-10-23)

Bug Fixes

Features

  • A new utility method to validate local study with new validation endpoint (3db9718)

v1.2.1 (2024-10-15)

Bug Fixes

v1.2.0 (2024-10-15)

Features

  • Async metabolights study provider implementation (5d670b7)

v1.1.12 (2024-10-14)

v1.1.11 (2024-10-12)

Bug Fixes

  • Tsv file read improvement (46f81a0)

Refactoring

  • Study metadata data model provider is refactored. added a default fix_new_lines_in_cells parameter to parse isa table file (723e757)

v1.1.10 (2024-09-23)

Testing

  • Test data for new parameter to filter empty isa table rows. (9c0cab6)

v1.1.9 (2024-09-18)

Refactoring

  • New parameter to filter empty isa table rows. (d6aa664)

v1.1.8 (2024-09-13)

Bug Fixes

  • Rollback @id field and update investigation tsv file write method (ebf17b4)

  • Investigation file rows fixed (b664483)

  • Id field is added to base class (ef682f4)

Refactoring

  • Investigationfilewriter write method is now aware of inherited classes of Investigation model (1928d04)

v1.1.7 (2024-09-12)

v1.1.6 (2024-08-30)

Bug Fixes

  • Comment object accepts str (88cecca)

  • Validation last update timestamp type is int or float. (64c65fa)

v1.1.5 (2024-07-22)

Bug Fixes

v1.1.4 (2024-07-22)

Bug Fixes

  • If there is an undefined characteristics column in sample sheet, set_organism method fails (367f919)

v1.1.3 (2024-07-09)

Bug Fixes

  • Windows path and new line issues (e8cf137)

v1.1.2 (2024-06-23)

Bug Fixes

  • Submitted study download error is fixed. (ad2cdc8)

Documentation

  • Documentation updates and new log messages (50055bc)

v1.1.1 (2024-06-22)

Bug Fixes

  • Code updates to fix pylint violations. (2a7dae0)

v1.1.0 (2024-06-20)

Cli

  • Submission delete-assay command is added. After deleting assay file, command downloads the latest metadata files from MetaboLights study. (f6b1ff5)

Documentation

  • Readme document and command message updates. (1428f25)

v1.0.1 (2024-06-20)

Bug Fixes

  • Public describe and submission describe command fixes. (7effb91)

Continuous Integration

  • Semantic versioning github actions are enabled. (cd7e027)

v1.0.0 (2024-06-20)

Bug Fixes

  • Python3.8 compatibility, new unit tests and lint fixes. ci: sematic release versioning. (3c6bb6f)

Continuous Integration

  • Semantic versioning configuration updates (085f5f5)

  • Github actions to run unit tests (3529cd7)