all_hog_levels_ML.sh

#!/bin/bash

program="snakemake -s ./workflow/ML3ditree -T 5 --profile slurmsimple/simple/ --config filter=True iqtree_cores=4 -k --rerun-incomplete --use-conda --directory  "
folders=($(ls -d /work/FAC/FBM/DBC/cdessim2/default/dmoi/projects/snake_tree/OMA_data/* ) )
for folder in "${folders[@]}"; do
  echo $program "$folder"
  $program "$folder" --unlock
  $program "$folder" 
done