.gitignore

results/**
backup/**
resources/**
logs/**
.snakemake
.snakemake/**
**/*.pdb
**/*.tsv
**/*.pyc
**/*.npy
**/*.csv
zenodo/**/**
examples/**
testdata/**
!testdata/identifiers.txt
!examples/**/identifiers.txt
!examples/**/*.csv
!examples/**/*.nhx
!examples/**/*.nwk
foldseek/bin/foldseek
foldseek/README.md
OMA_data*/**
OMA_mk3*/**
CATH_data*/**
CAT_data*/**
CATH_data*/**
SCOP_data*/**
OMA_data*/**
CATH_data_mk2/**
CAT_mk3/**
CATH_mk3/**
OMA_data_unfiltered*/**
CATH_data_unfiltered*/**
CAT_data_unfiltered*/**
!SCOP_data/pdb_chain_scop_uniprot.csv
!CATH_data/cath-domain-list.txt
!CATH_data/pdb_chain_cath_uniprot.csv
!CATH_data/cath-domain-list.txt
src/__pycache__/**
src/**/__pycache__/**

testdata/**
!testdata/identifiers.txt
notebooks/tmp/**
src/dataprep/**
!src/dataprep/*.py
!src/dataprep/*.sh

notebooks/**.pkl