Input more than one proteome

[aureliendejode]

Hello,
I would like to have more that one proteome as input for Omark, but I did not see a way to do that.
Is that possible ?

Thanks for your help.

Aurélien

[YanNevers]

Hello @aureliendejode !

OMArk is made to process one proteome at once, as it assume its input the full protein set of one species.
It should however be quite easy to write bash scripts that run multiple OMArk instance sequentially to process multiple proteomes, sequentially or in parallel.

When you have the results for more than one proteomes you can then use our Explore_data Jupyter Notebook or the plot_all_results.py python companion scripts, available on the utils section of this GitHub to visualize the results for many proteomes at once.

I hope this answer your question, but do feel free to elaborate on what you would like to see if it does not.

Best wishes,
Yannis Nevers