From 84beea34e5d5e9c0697e20651641cb266dab17ca Mon Sep 17 00:00:00 2001 From: mauriciolangleib Date: Sun, 19 Jun 2022 23:10:05 -0300 Subject: [PATCH] deleting_old_phyloecotree Replaced by a version with shorter IDs, as displayed in the main text --- .../Phylo-Eco-mapping/results/Phylo-Eco-tree.newick | 1 - 1 file changed, 1 deletion(-) delete mode 100755 Phylo_Eco_Mapping/Phylo-Eco-mapping/results/Phylo-Eco-tree.newick diff --git a/Phylo_Eco_Mapping/Phylo-Eco-mapping/results/Phylo-Eco-tree.newick b/Phylo_Eco_Mapping/Phylo-Eco-mapping/results/Phylo-Eco-tree.newick deleted file mode 100755 index f7789b8c..00000000 --- a/Phylo_Eco_Mapping/Phylo-Eco-mapping/results/Phylo-Eco-tree.newick +++ /dev/null @@ -1 +0,0 @@ -(((((((((((3300000868-JGI12330J12834-1000008-299010-8_-Halobacteria:0.3457639325,(MGYP000648692434:0.1977553056,MGYP000103175163:0.3096450635)100:0.1713981444):0.4091562123,(((MGYP000005856144:0.1235982534,MGYP000141506420:0.1616948274)100:0.099012819,WP_058826362.1_-Haloferax_sp._Q22:0.1059255884)100:0.2154752486,WP_049937247.1_-_WP_157573584.1_-Haloplanus_natans_DSM_17983:0.2852562934)100:0.380606366)100:0.0602059615,MGYP000353818161:0.5928821143)96:0.0823790465,(lcl|NZ_CP071597.1_prot_WP_207587115.1_2894_-Halovivax_sp._KZCA124:0.3850052425,WP_174701778.1_-Haloterrigena_sp._SYSU_A121-1:0.5041927248)100:0.1926086668)99:0.0627108078,(WP_007110832.1_-_WP_144240185.1_-Natrinema_altunense_-AJ2:2.4913e-06,ELY83688.1_-JCM12890-_-Natrinema_altunense_JCM12890:2.4913e-06)100:0.6195854405)50:0.1898574901,(mc1328965482|Representative=gi|998585003|gb|LFCJ01001378.1|_8/1661_-TBA:0.4400475663,LKMP01000007_1_-Nanohaloarchaea_archaeon_B1-Br10_U2g21:0.3512045799)100:0.9011721992)94:0.1644507516,MGYP000598426430-1548_-Archaea-Euryarchaeota-Halobacteria-Halobacteriales:1.212854525)68:0.1615766067,(MGYP000681001372:0.8465883338,((MGYP000179698888-RLG58774.1_-Candidatus_Geothermarchaeota_B85_G16:0.6742951758,RLI53188.1_-Candidatus_Thorarchaeota_archaeon:0.7668800004)100:0.2125756315,HHR27186.1_-Candidatus_Bathyarchaeota_archaeon:1.142025617)99:0.2441521611)99:0.2061712151)98:0.0999810332,((AntAceMinimDraft_10_1070366.scaffolds.fasta_scaffold00069_38_-TBA:0.1585650782,AntAceMinimDraft_18_1070375.scaffolds.fasta_scaffold50355_1_-1_ORF_scaffold:0.1688647856)100:0.6700247418,(AntAceMinimDraft_18_1070375.scaffolds.fasta_scaffold00713_2_-TBA:1.005375974,AntAceMinimDraft_18_1070375.scaffolds.fasta_scaffold31711_5_-1_ORF_scaffold:1.228507776)80:0.1157117309)81:0.1770471966)89:0.2479015097,(((((((3300014206-Ga0172377-10000119-870930-129_-Methanomicrobia:0.1445980241,3300014208-Ga0172379-10001592-871560-40_-Methanomicrobia:0.180534123)100:0.6689882621,3300014613-Ga0180008-1001212-875221-12:0.7765755443)99:0.172372728,3300014208-Ga0172379-10000243-871512-158_-Methanomicrobia?:0.7598678111)100:0.4123042062,AntAceMinimDraft_18_1070375.scaffolds.fasta_scaffold72169_1_-1_ORF_scaffold:0.8723195989)84:0.0722797335,((AntAceMinimDraft_18_1070375.scaffolds.fasta_scaffold06785_2_-TBA:0.1761345379,AntAceMinimDraft_4_1070372.scaffolds.fasta_scaffold17623_2_-TBA:0.2668618972)100:0.8267097284,(AntAceMinimDraft_18_1070375.scaffolds.fasta_scaffold134102_1_-1_ORF_scaffold:0.7945299752,AntAceMinimDraft_18_1070375.scaffolds.fasta_scaffold29013_2_-TBA:0.8583686587)100:0.2805373987)100:0.3599154203)93:0.1732758126,RLG94066.1_-Candidatus_Bathyarchaeota_archaeon:1.080765585)42:0.0532379104,(((((((AntAceMinimDraft_10_1070366.scaffolds.fasta_scaffold00511_6_-TBA:0.3414833031,AntAceMinimDraft_4_1070372.scaffolds.fasta_scaffold83478_1_-1_ORF_scaffold:0.4045049337)100:0.5028308537,((AntAceMinimDraft_10_1070366.scaffolds.fasta_scaffold24857_2_-TBA:0.6278493409,AntAceMinimDraft_18_1070375.scaffolds.fasta_scaffold01114_5_-TBA:0.745684719)100:0.2166694715,((AntAceMinimDraft_18_1070375.scaffolds.fasta_scaffold02562_2_-TBA:0.9722054541,((AntAceMinimDraft_18_1070375.scaffolds.fasta_scaffold11370_2_-TBA:0.4115040238,AntAceMinimDraft_4_1070372.scaffolds.fasta_scaffold18285_3_-TBA:0.4731107036)84:0.104438856,((AntAceMinimDraft_18_1070375.scaffolds.fasta_scaffold82302_1_-1_ORF_scaffold:0.1952986434,AntAceMinimDraft_4_1070372.scaffolds.fasta_scaffold07707_5_-TBA:0.309242695)100:0.2177275431,AntAceMinimDraft_4_1070372.scaffolds.fasta_scaffold00557_40_-TBA:0.2707305581)100:0.0965091858)85:0.1971610061)89:0.2027119958,((AntAceMinimDraft_18_1070375.scaffolds.fasta_scaffold36732_2_-1_ORF_scaffold:0.2507803136,AntAceMinimDraft_18_1070375.scaffolds.fasta_scaffold55385_1_-1_ORF_scaffold:0.1600426885)100:0.309143575,AntAceMinimDraft_4_1070372.scaffolds.fasta_scaffold34113_4_-1_ORF_scaffold:0.5857456258)99:0.1509090516)90:0.217772488)82:0.0777919774)83:0.0778323388,(AntAceMinimDraft_18_1070375.scaffolds.fasta_scaffold26691_1_-1_ORF_scaffold:0.7844506755,AntAceMinimDraft_4_1070372.scaffolds.fasta_scaffold70733_1_-1_ORF_scaffold:0.9874048258)98:0.2370174846)89:0.1302479024,(MGYP000642661316:1.044418149,MGYP000359581082:1.007891403)100:0.2317815937)100:0.3031619641,mc35926358|Representative=scaffold16196_4/1624_-TBA:1.290765425)74:0.1469541021,((((((AntAceMinimDraft_10_1070366.scaffolds.fasta_scaffold03294_14_-TBA:0.4829641128,AntAceMinimDraft_10_1070366.scaffolds.fasta_scaffold12674_2_-TBA:0.5559571197)88:0.1336807671,AntAceMinimDraft_14_1070370.scaffolds.fasta_scaffold61386_1_-1_ORF_scaffold:0.5617378374)100:0.4902038429,(AntAceMinimDraft_18_1070375.scaffolds.fasta_scaffold06919_8_-TBA:0.3214560339,AntAceMinimDraft_18_1070375.scaffolds.fasta_scaffold15402_2_-TBA:0.5667959023)100:0.8289342362)96:0.1587885517,(((AntAceMinimDraft_10_1070366.scaffolds.fasta_scaffold06212_4_-TBA:0.7017261143,(AntAceMinimDraft_4_1070372.scaffolds.fasta_scaffold28048_2_-TBA:0.6343266594,(mc1330463358|Represent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