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|CyVerse logo|_
|Home_Icon|_
`Learning Center Home <http://learning.cyverse.org/>`_
SciApps Guide
==============
Goal
----
Introduce SciApps, a cloud-based platform for building and sharing reproducible bioinformatics workflows across distributed computing and storage systems. This guide will cover accessing CyVerse Data Store, launching analysis jobs, visualizing results, building, sharing, and running workflows.
----
.. toctree::
:maxdepth: 2
Platform guide home <self>
SciApps Basics and Logging In <step1.rst>
Viewing and Accessing Data <step2.rst>
Launching an Analysis Job <step3.rst>
Building a Workflow <step4.rst>
The Annotation Tutorial <annotation.rst>
The Association Tutorial <association.rst>
The BSA Tutorial <bsa.rst>
The MaizeCODE Tutorial <maizecode.rst>
..
#### Comment:This tutorial can have multiple pages. The table of contents assumes
you have an additional page called 'First Step' with content located in 'step1.rst'.
Copy step1.rst. step2.rst has slightly different formatting to end the document.
Edit these titles and filenames as needed ####
Prerequisites
-------------
Downloads, access, and services
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
*In order to complete this tutorial, you will need access to the following services/software*
..
#### comment: delete any row not needed in this table ####
.. list-table::
:header-rows: 1
* - Prerequisite
- Preparation/Notes
- Link/Download
* - CyVerse account
- You will need a CyVerse account to complete this exercise
- `Register <https://user.cyverse.org/>`_
* - SciApps access
- You will need to request access to SciApps from the user portal. Check the 'My Services' tab; if SciApps is not listed, click the 'Available' tab, locate SciApps and click the link to request access.
- `CyVerse User Portal <https://user.cyverse.org/>`__
----
**Fix or improve this documentation**
- On Github: `Repo link <https://github.com/CyVerse-learning-materials/SciApps_guide/blob/master/index.rst>`_
- Send feedback: `[email protected] <[email protected]>`_
----
|Home_Icon|_
`Learning Center Home <http://learning.cyverse.org/>`_
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.. _CyVerse logo: http://learning.cyverse.org/
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