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I am using ONT reads, however, my corrected.cds.gff file has recorded the source as PacBio. GL000194.1 PacBio exon 53590 55676 . - . transcript_id "ENST00000613230.1"; gene_id "ENSG00000277400.1";
However corrected.gtf has recorded the original source. I have two questions.
What's the difference between corrected.gtf and corrected.gtf.cds.gff?
Does having the wrong source (pacbio here) have any computational implications? Is there an argument where I can specify I am using ONT reads instead?
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Hi there,
I am using
ONT
reads, however, mycorrected.cds.gff
file has recorded thesource
as PacBio.GL000194.1 PacBio exon 53590 55676 . - . transcript_id "ENST00000613230.1"; gene_id "ENSG00000277400.1";
However
corrected.gtf
has recorded the originalsource
. I have two questions.corrected.gtf
andcorrected.gtf.cds.gff
?pacbio
here) have any computational implications? Is there an argument where I can specify I am using ONT reads instead?Thanks,
Sowmya
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