From 9f78314313c08f9eee89d555fffe5e1c20fd12b9 Mon Sep 17 00:00:00 2001 From: Tasnim Mehzabin Date: Mon, 29 Jul 2024 14:31:15 +0200 Subject: [PATCH 1/2] fix: minor text changes in the device documentation part --- .../gc_gc-ms/shimadzu_labsolutions_gc-ms.mdx | 2 +- .../gc_gc-ms/shimadzu_labsolutions_gc.mdx | 2 +- .../hplc_lc-ms/shimadzu_labsolutions.mdx | 2 +- docs/eln/devices/nmr/bruker_topspin.mdx | 31 ++++++++----------- docs/eln/devices/nmr/magritek_spinsolve.mdx | 2 -- 5 files changed, 16 insertions(+), 23 deletions(-) diff --git a/docs/eln/devices/gc_gc-ms/shimadzu_labsolutions_gc-ms.mdx b/docs/eln/devices/gc_gc-ms/shimadzu_labsolutions_gc-ms.mdx index e1abb8a5..0f793a93 100644 --- a/docs/eln/devices/gc_gc-ms/shimadzu_labsolutions_gc-ms.mdx +++ b/docs/eln/devices/gc_gc-ms/shimadzu_labsolutions_gc-ms.mdx @@ -54,7 +54,7 @@ Please take care that you communicate [name conventions](../../devices#name-conv Data conversion is coordinated by the Batch's settings configurations. In LabSolutions Realtime Analysis enter the Batch Table tab, then expand the "Batch" menu and choose "Settings...". -In the "File Conversion" tab activate the check boxes of of each file type the data is to be converted to. +In the "File Conversion" tab activate the check boxes of each file type the data is to be converted to. The converted files will be named according to the original sample's name. For conversions into ASCII format additional considerations are required. In the ASCII Conversion tab of the Batch's settings window activate the "Export ASCII File(s)" check box. diff --git a/docs/eln/devices/gc_gc-ms/shimadzu_labsolutions_gc.mdx b/docs/eln/devices/gc_gc-ms/shimadzu_labsolutions_gc.mdx index 30310f84..28b72af1 100644 --- a/docs/eln/devices/gc_gc-ms/shimadzu_labsolutions_gc.mdx +++ b/docs/eln/devices/gc_gc-ms/shimadzu_labsolutions_gc.mdx @@ -54,7 +54,7 @@ Please take care that you communicate [name conventions](../../devices#name-conv Data conversion is coordinated by the Batch's settings configurations. In LabSolutions Realtime Analysis enter the Realtime Batch tab, then expand the "Batch" menu and choose "Settings...". -In the "File Conversion" tab activate the check boxes of of each file type the data is to be converted to. +In the "File Conversion" tab activate the check boxes of each file type the data is to be converted to. The converted files will be named according to the original sample's name. For conversions into ASCII format additional considerations are required. In the ASCII Conversion tab of the Batch's settings window activate the "Export ASCII File(s)" check box. diff --git a/docs/eln/devices/hplc_lc-ms/shimadzu_labsolutions.mdx b/docs/eln/devices/hplc_lc-ms/shimadzu_labsolutions.mdx index 67175278..a3eb22e3 100644 --- a/docs/eln/devices/hplc_lc-ms/shimadzu_labsolutions.mdx +++ b/docs/eln/devices/hplc_lc-ms/shimadzu_labsolutions.mdx @@ -54,7 +54,7 @@ Please take care that you communicate [name conventions](../../devices#name-conv Data conversion is coordinated by the Batch's settings configurations. In LabSolutions Realtime Analysis enter the Realtime Batch tab, then expand the "Batch" menu and choose "Settings...". -In the "File Conversion" tab activate the check boxes of of each file type the data is to be converted to. +In the "File Conversion" tab activate the check boxes of each file type the data is to be converted to. The converted files will be named according to the original sample's name. For conversions into ASCII format additional considerations are required. In the ASCII Conversion tab of the Batch's settings window activate the "Export ASCII File(s)" check box. diff --git a/docs/eln/devices/nmr/bruker_topspin.mdx b/docs/eln/devices/nmr/bruker_topspin.mdx index 6e8665da..4eee165a 100644 --- a/docs/eln/devices/nmr/bruker_topspin.mdx +++ b/docs/eln/devices/nmr/bruker_topspin.mdx @@ -11,10 +11,6 @@ Operating system: CentOS Linux Release 7.2.1511 (Core) TopSpin: Version 3.5 IconNMR: Version 5.0.6 Build 32 -:::info -Please take care that you communicate [name conventions]([naming convention](../../devices#name-conventions)) to all users of the Chemotion ELN. -::: - Requirements: Local instance of the Chemotion ELN and administrator privileges. Administrator privileges for the PC’s operating system, for TopSpin and for IconNMR. For remote access to @@ -46,7 +42,7 @@ Enter “Advanced …” -> select Permissions -> shared (check), forever (check ### File Transfer Setup TopSpin: -TopSpin Configurations:A shared network storage location needs to be made +TopSpin Configurations: A shared network storage location needs to be made available to the NMR’s PC and the Chemotion ELN. This can either be set up on a third-party (a NAS server, another PC’s shared storage, etc.) or it can be set up locally on the NMR’s PC. For this guide the KIT’s LSDF service was used. If a @@ -60,8 +56,10 @@ to be necessary). ![device_NMR_2](/img/device_NMR_2.png) -Select what files are to be included in the file transfer and set a desired project name. Select the File System folder option and insert the local path of the network storage mounted in Linux. Finally click on “Save as default”. -After an experiment finished acquiring go to the “Publish” tab and select the “Mobile” option. The data will now be transferred to the network storage location for pickup by the Chemotion ELN’s data collector. +Select what files are to be included in the file transfer and set a desired project name. Select the File System folder +option and insert the local path of the network storage mounted in Linux. Finally click on “Save as default”. +After an experiment finished acquiring go to the “Publish” tab and select the “Mobile” option. The data will now be +transferred to the network storage location for pickup by the Chemotion ELN’s data collector. Configuration of Chemotion ELN’s data collector: @@ -71,14 +69,12 @@ After an experiment finished acquiring go to the “Publish” tab and select th ### File Transfer Setup IconNMR: -IconNMR Configurations: -Data transfer via mail client (data is sent as email attachment) from IconNMR to -the Chemotion ELN can be set up when the Chemotion ELN’s email address is added as -recipient to the IconNMR user settings. This method requires every user setting up -their experiment under their own account. In the user’s setting (Options -> Configuration --> User Settings -> User Manager -> [select user]) enter the user’s email address -(this needs to be the same address used to register to the Chemotion ELN) and the -Chemotion ELN’s email address in “Target Email Address” in the following format: +IconNMR Configurations: Data transfer via mail client (data is sent as email attachment) from IconNMR to +the Chemotion ELN can be set up when the Chemotion ELN’s email address is added as recipient to the IconNMR user +settings. This method requires every user setting up their experiment under their own account. In the user’s +setting (Options -> Configuration -> User Settings -> User Manager -> [select user]) enter the user’s email address +(this needs to be the same address used to register to the Chemotion ELN) and the Chemotion ELN’s email address in +“Target Email Address” in the following format: ```sh “ @@ -91,9 +87,8 @@ Under “Permissions” select ZIP DataMail and if desired JDX DataMail. ![device_NMR_3](/img/device_NMR_3.png) -Config Chemotion ELN’s data collector: -The Chemotion ELN's data collector has to be configured to collect emails with NMR -data attachments. +Config Chemotion ELN’s data collector: The Chemotion ELN's data collector has to be configured to collect +emails with NMR data attachments. :::note Links [see the email-attachment-collector settings page](../../install_configure/configuration#vnc#file-collector) diff --git a/docs/eln/devices/nmr/magritek_spinsolve.mdx b/docs/eln/devices/nmr/magritek_spinsolve.mdx index 49786fe2..a9e11ada 100644 --- a/docs/eln/devices/nmr/magritek_spinsolve.mdx +++ b/docs/eln/devices/nmr/magritek_spinsolve.mdx @@ -33,8 +33,6 @@ For the NMR integration, we have decided to configure both these features. ## Remote Device Control -## Remote Device Control - :::info General guideline regarding the configurations of remote device control can be found [here](../configurations/remote_control). ::: From b679886ad598ec2be63e4fd53a0d51f5c976c8fd Mon Sep 17 00:00:00 2001 From: "Shashank S. Harivyasi" <45761248+harivyasi@users.noreply.github.com> Date: Tue, 20 Aug 2024 12:03:22 +0000 Subject: [PATCH 2/2] fix links and bold --- docs/eln/devices/nmr/bruker_topspin.mdx | 16 +++------------- 1 file changed, 3 insertions(+), 13 deletions(-) diff --git a/docs/eln/devices/nmr/bruker_topspin.mdx b/docs/eln/devices/nmr/bruker_topspin.mdx index 46269f82..562884d7 100644 --- a/docs/eln/devices/nmr/bruker_topspin.mdx +++ b/docs/eln/devices/nmr/bruker_topspin.mdx @@ -44,17 +44,7 @@ Enter “Advanced …” -> select Permissions -> shared (check), forever (check ### File Transfer Setup TopSpin: -**TopSpin Configurations:** A shared network storage location needs to be made -available to the NMR’s PC and the Chemotion ELN. This can either be set up on a -third-party (a NAS server, another PC’s shared storage, etc.) or it can be set -up locally on the NMR’s PC. For this guide the KIT’s LSDF service was used. If a -third-party service is used the network location needs to be mounted in Linux. -For this guide the LSDF folder was mounted into the home directory of the NMR’s -PC using the KIT LSDF’s SMB Samba server. In TopSpin change to the “Publish tab -and select the dropdown of the “Mobile” option. Choose “configure” and set the -following settings: (herein described are the minimum configurations that need -to be set, depending on your local requirements further adaptations might need -to be necessary). +**TopSpin Configurations:** A shared network storage location needs to be made available to the NMR’s PC and the Chemotion ELN. This can either be set up on a third-part (a NAS server, another PC’s shared storage, etc.) or it can be set up locally on the NMR’s PC. For this guide the KIT’s LSDF service was used. If a third-party service is used the network location needs to be mounted in Linux. For this guide the LSDF folder was mounted into the home directory of the NMR’s PC using the KIT LSDF’s SMB Samba server. In TopSpin change to the “Publish tab and select the dropdown of the “Mobile” option. Choose “configure” and set the following settings: (herein described are the minimum configurations that need to be set, depending on your local requirements further adaptations might need to be necessary). ![device_NMR_2](/img/device_NMR_2.png) @@ -73,7 +63,7 @@ transferred to the network storage location for pickup by the Chemotion ELN’s ### File Transfer Setup IconNMR: -IconNMR Configurations: Data transfer via mail client (data is sent as email +**IconNMR Configurations:** Data transfer via mail client (data is sent as email attachment) from IconNMR to the Chemotion ELN can be set up when the Chemotion ELN’s email address is added as recipient to the IconNMR user settings. This method requires every user setting up their experiment under their own account. In the user’s setting @@ -93,7 +83,7 @@ Under “Permissions” select ZIP DataMail and if desired JDX DataMail. ![device_NMR_3](/img/device_NMR_3.png) -Config Chemotion ELN’s data collector: The Chemotion ELN's data collector +**Config Chemotion ELN’s data collector:** The Chemotion ELN's data collector has to be configured to collect emails with NMR data attachments. :::note[Links]