sailfish.rb

class Sailfish < Formula
  desc "Rapid mapping-based RNA-Seq isoform quantification"
  homepage "https://www.cs.cmu.edu/~ckingsf/software/sailfish"
  # doi "10.1038/nbt.2862"
  # tag "bioinformatics"
  url "https://github.com/kingsfordgroup/sailfish/archive/v0.10.1.tar.gz"
  sha256 "a0d6d944382f2e07ffbfd0371132588e2f22bb846ecfc3d3435ff3d81b30d6c6"
  revision 2

  bottle :disable, "needs to be rebuilt with latest boost"

  depends_on "autoconf" => :build
  depends_on "automake" => :build
  depends_on "boost"
  depends_on "cmake" => :build
  depends_on "tbb"
  needs :cxx11

  def install
    ENV.deparallelize
    mkdir "build" do
      system "cmake", "..", *std_cmake_args
      system "make", "install"
    end
  end

  test do
    system "#{bin}/sailfish", "--version"
  end
end