Add project toml and add uv to build #19
dnilAnnotations
10 errors
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Ruff (F841):
genmod/annotate_models/genetic_models.py#L106
genmod/annotate_models/genetic_models.py:106:9: F841 Local variable `compound_pairs` is assigned to but never used
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Ruff (F841):
genmod/annotate_models/genetic_models.py#L335
genmod/annotate_models/genetic_models.py:335:9: F841 Local variable `mother_phenotype` is assigned to but never used
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Ruff (F841):
genmod/annotate_models/genetic_models.py#L340
genmod/annotate_models/genetic_models.py:340:9: F841 Local variable `father_phenotype` is assigned to but never used
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Ruff (F841):
genmod/annotate_variants/annotate.py#L20
genmod/annotate_variants/annotate.py:20:5: F841 Local variable `ref` is assigned to but never used
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Ruff (E722):
genmod/annotate_variants/read_tabix_files.py#L48
genmod/annotate_variants/read_tabix_files.py:48:5: E722 Do not use bare `except`
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Ruff (F821):
genmod/commands/analyze.py#L99
genmod/commands/analyze.py:99:32: F821 Undefined name `compound_dict`
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Ruff (F821):
genmod/commands/analyze.py#L100
genmod/commands/analyze.py:100:16: F821 Undefined name `compounds`
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Ruff (F821):
genmod/commands/analyze.py#L224
genmod/commands/analyze.py:224:12: F821 Undefined name `compounds`
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Ruff (F841):
genmod/commands/analyze.py#L268
genmod/commands/analyze.py:268:5: F841 Local variable `de_novo_set` is assigned to but never used
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Ruff (F841):
genmod/score_variants/compound_scorer.py#L203
genmod/score_variants/compound_scorer.py:203:25: F841 Local variable `family_id` is assigned to but never used
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