From cb13d5009229fa6daf2b548ea0be093535aae0b8 Mon Sep 17 00:00:00 2001 From: Jake Bolewski Date: Tue, 23 Mar 2021 10:54:11 -0600 Subject: [PATCH 1/5] build and deploy docs --- .github/workflows/Docs.yml | 47 ++ .gitignore | 5 +- README.md | 19 + docs/Manifest.toml | 1033 +------------------------ docs/Project.toml | 17 - docs/make.jl | 54 +- docs/src/installation_instructions.md | 56 ++ 7 files changed, 173 insertions(+), 1058 deletions(-) create mode 100644 .github/workflows/Docs.yml create mode 100644 docs/src/installation_instructions.md diff --git a/.github/workflows/Docs.yml b/.github/workflows/Docs.yml new file mode 100644 index 000000000..c38e14cea --- /dev/null +++ b/.github/workflows/Docs.yml @@ -0,0 +1,47 @@ +name: Documentation + +on: + pull_request: + paths: + - 'docs/**' + - 'src/**' + - 'Project.toml' + - 'Manifest.toml' + +jobs: + docs-build: + runs-on: ubuntu-latest + timeout-minutes: 60 + steps: + - name: Cancel Previous Runs + uses: styfle/cancel-workflow-action@0.8.0 + with: + access_token: ${{ github.token }} + - uses: actions/checkout@v2 + - uses: julia-actions/setup-julia@v1 + with: + version: 1.5.4 + - name: Cache artifacts + uses: actions/cache@v1 + env: + cache-name: cache-artifacts + with: + path: ~/.julia/artifacts + key: ${{ runner.os }}-test-${{ env.cache-name }}-${{ hashFiles('**/Project.toml') }} + restore-keys: | + ${{ runner.os }}-test-${{ env.cache-name }}- + ${{ runner.os }}-test- + ${{ runner.os }}- + - name: Install dependencies + env: + PYTHON: "" + run: | + julia --color=yes --project -e 'using Pkg; Pkg.instantiate()' + julia --color=yes --project -e 'using Conda; Conda.add("scikit-learn")' + julia --color=yes --project=docs/ -e 'using Pkg; Pkg.instantiate()' + julia --color=yes --project=docs/ -e 'using Pkg; Pkg.precompile()' + - name: Build and deploy + env: + GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }} + JULIA_PROJECT: "docs/" + run: julia --color=yes --project=docs/ docs/make.jl \ No newline at end of file diff --git a/.gitignore b/.gitignore index cc49189e3..ba418360f 100644 --- a/.gitignore +++ b/.gitignore @@ -1,5 +1,4 @@ # ignore the following patterns -*.jl.cov *.vtk *.dat *.csv @@ -8,12 +7,10 @@ *.swp *.png !docs/src/assets/*.png -*.DS_Store docs/build/ data/ docs/site/ *.jl.*.cov *.jl.mem -deps/deps.jl -Manifest.toml *.vscode* +*.DS_Store diff --git a/README.md b/README.md index 001236ec0..915d4ecdd 100644 --- a/README.md +++ b/README.md @@ -28,6 +28,25 @@ cd CalibrateEmulateSample.jl Install all the project dependencies. Given that CES depends on python packages it is easiest to set the project to use it's own conda environment + +## Building CES Documentation + +You need to first build the toplevel project before building the documentation: + +``` +cd CalibrateEmulateSample.jl +julia --project -e 'using Pkg; Pkg.instantiate() +``` + +Then you can build the project documentation under the `docs/` sub-project: + +``` +julia --project=docs/ -e 'using Pkg; Pkg.instantiate()' +julia --project=docs/ docs/make.jl +``` + +The locally rendered HTML documentation can be viewed at `docs/build/index.html` + ### Project Mind map The latest code structure is found at: https://miro.com/app/board/o9J_kkm8OGU=/ diff --git a/docs/Manifest.toml b/docs/Manifest.toml index e0ad5506e..d95d44d36 100644 --- a/docs/Manifest.toml +++ b/docs/Manifest.toml @@ -1,811 +1,75 @@ # This file is machine-generated - editing it directly is not advised -[[AbstractFFTs]] -deps = ["LinearAlgebra"] -git-tree-sha1 = "051c95d6836228d120f5f4b984dd5aba1624f716" -uuid = "621f4979-c628-5d54-868e-fcf4e3e8185c" -version = "0.5.0" - 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-[[VertexSafeGraphs]] -deps = ["LightGraphs"] -git-tree-sha1 = "35060f8047a2b79bdc8e4961bbbd2b7e30e62709" -uuid = "19fa3120-7c27-5ec5-8db8-b0b0aa330d6f" -version = "0.1.1" - -[[WeakRefStrings]] -deps = ["DataAPI", "Random", "Test"] -git-tree-sha1 = "28807f85197eaad3cbd2330386fac1dcb9e7e11d" -uuid = "ea10d353-3f73-51f8-a26c-33c1cb351aa5" -version = "0.6.2" - -[[Widgets]] -deps = ["Colors", "Dates", "Observables", "OrderedCollections"] -git-tree-sha1 = "fc0feda91b3fef7fe6948ee09bb628f882b49ca4" -uuid = "cc8bc4a8-27d6-5769-a93b-9d913e69aa62" -version = "0.6.2" - -[[WoodburyMatrices]] -deps = ["LinearAlgebra", "SparseArrays"] -git-tree-sha1 = "bbb9f7fd6fbdd9582e77c0b698312c543de5eb71" -uuid = "efce3f68-66dc-5838-9240-27a6d6f5f9b6" -version = "0.5.0" - -[[XML2_jll]] -deps = ["Libdl", "Libiconv_jll", "Pkg", "Zlib_jll"] -git-tree-sha1 = "ed5603a695aefe3e9e404fc7b052e02cc72cfab6" -uuid = "02c8fc9c-b97f-50b9-bbe4-9be30ff0a78a" -version = "2.9.9+1" - -[[ZipFile]] -deps = ["Libdl", "Printf", "Zlib_jll"] -git-tree-sha1 = "8748302cfdec02c4ae9c97b112cf10003f7f767f" -uuid = "a5390f91-8eb1-5f08-bee0-b1d1ffed6cea" -version = "0.9.1" - -[[Zlib_jll]] -deps = ["Libdl", "Pkg"] -git-tree-sha1 = "fd36a6739e256527287c5444960d0266712cd49e" -uuid = "83775a58-1f1d-513f-b197-d71354ab007a" -version = "1.2.11+8" - -[[Zygote]] -deps = ["DiffRules", "FFTW", "FillArrays", "ForwardDiff", "IRTools", "InteractiveUtils", "LinearAlgebra", "MacroTools", "NNlib", "NaNMath", "Random", "Requires", "SpecialFunctions", "Statistics", "ZygoteRules"] -git-tree-sha1 = "54872ae5411c8795ed52852759796a04fb771f68" -uuid = "e88e6eb3-aa80-5325-afca-941959d7151f" -version = "0.4.7" - -[[ZygoteRules]] -deps = ["MacroTools"] -git-tree-sha1 = "b3b4882cc9accf6731a08cc39543fbc6b669dca8" -uuid = "700de1a5-db45-46bc-99cf-38207098b444" -version = "0.2.0" diff --git a/docs/Project.toml b/docs/Project.toml index 274e9fc77..dfa65cd10 100644 --- a/docs/Project.toml +++ b/docs/Project.toml @@ -1,19 +1,2 @@ [deps] -ArgParse = "c7e460c6-2fb9-53a9-8c5b-16f535851c63" -CalibrateEmulateSample = "95e48a1f-0bec-4818-9538-3db4340308e3" -Conda = "8f4d0f93-b110-5947-807f-2305c1781a2d" -ConfParser = "88353bc9-fd38-507d-a820-d3b43837d6b9" -DifferentialEquations = "0c46a032-eb83-5123-abaf-570d42b7fbaa" -Distributions = "31c24e10-a181-5473-b8eb-7969acd0382f" -DocStringExtensions = "ffbed154-4ef7-542d-bbb7-c09d3a79fcae" Documenter = "e30172f5-a6a5-5a46-863b-614d45cd2de4" -EllipsisNotation = "da5c29d0-fa7d-589e-88eb-ea29b0a81949" -LinearAlgebra = "37e2e46d-f89d-539d-b4ee-838fcccc9c8e" -NPZ = "15e1cf62-19b3-5cfa-8e77-841668bca605" -Parameters = "d96e819e-fc66-5662-9728-84c9c7592b0a" -PyCall = "438e738f-606a-5dbb-bf0a-cddfbfd45ab0" -PyPlot = "d330b81b-6aea-500a-939a-2ce795aea3ee" -ScikitLearn = "3646fa90-6ef7-5e7e-9f22-8aca16db6324" -Statistics = "10745b16-79ce-11e8-11f9-7d13ad32a3b2" -StatsBase = "2913bbd2-ae8a-5f71-8c99-4fb6c76f3a91" -Test = "8dfed614-e22c-5e08-85e1-65c5234f0b40" diff --git a/docs/make.jl b/docs/make.jl index 5918a38ad..42668ca49 100644 --- a/docs/make.jl +++ b/docs/make.jl @@ -1,26 +1,40 @@ -using CalibrateEmulateSample, Documenter +# reference in tree version of CalibrateEmulateSample +prepend!(LOAD_PATH, [joinpath(@__DIR__, "..")]) + +using CalibrateEmulateSample +using Documenter +# using DocumenterCitations + +#---------- + +pages = [ + "Home" => "index.md", + "Installation instructions" => "installation_instructions.md", +] + +#---------- + +format = Documenter.HTML( + collapselevel = 1, + prettyurls = !isempty(get(ENV, "CI", "")) +) makedocs( sitename = "CalibrateEmulateSample.jl", + authors = "CliMA Contributors", + format = format, + pages = pages, + modules = [CalibrateEmulateSample], doctest = false, - strict = false, - format = Documenter.HTML( - prettyurls = get(ENV, "CI", nothing) == "true", - mathengine = MathJax(Dict( - :TeX => Dict( - :equationNumbers => Dict(:autoNumber => "AMS"), - :Macros => Dict() - ) - )) - ), - clean = false, - modules = [Documenter, CalibrateEmulateSample], - pages = Any[ - "Home" => "index.md", - ], + strict = true, + clean = true, + checkdocs = :none, ) -deploydocs( - repo = "github.com/CliMA/CalibrateEmulateSample.jl.git", - target = "build", - ) +if !isempty(get(ENV, "CI", "")) + deploydocs( + repo = "github.com/CliMA/CalibrateEmulateSample.jl.git", + versions = ["stable" => "v^", "v#.#.#", "dev" => "dev"], + push_preview = true, + ) +end \ No newline at end of file diff --git a/docs/src/installation_instructions.md b/docs/src/installation_instructions.md new file mode 100644 index 000000000..dc92f4496 --- /dev/null +++ b/docs/src/installation_instructions.md @@ -0,0 +1,56 @@ +# Installation Instructions + +### Installing CalibrateEmulateSample.jl + +Currently CalibrateEmulateSample (CES) depends on some external python dependencies including `scikit-learn` wrapped by ScikitLearn.jl which requires a couple extra installation steps: + +First clone the project into a new local repository + +``` +> git clone git@github.com:Clima/CalibrateEmulateSample.jl +> cd CalibrateEmulateSample.jl +``` + +Install and build the project dependencies. +Given that CES depends on python packages it is easiest to set the project to use it's own +[Conda](https://docs.conda.io/en/latest/miniconda.html) environment variable +(set by exporting the ENV variable `PYTHON=""`). + +``` +> PYTHON="" julia --project -e 'using Pkg; Pkg.instantiate() +``` + + +The `scikit-learn` package then has to be installed if using a Julia project specific Conda environment: + +``` +> PYTHON="" julia --project= -e 'using Conda; Conda.add("scikit-learn")' + +``` + +See the [PyCall.jl documentation](https://github.com/JuliaPy/PyCall.jl#specifying-the-python-version) +for more information about how to configure the local Julia / Conda / Python environment. + +To test that the package is working: + +``` +> julia --project -e 'using Pkg; Pkg.test()' +``` + +### Building the documentation locally + +You need to first build the top-level project before building the documentation: + +``` +cd CalibrateEmulateSample.jl +julia --project -e 'using Pkg; Pkg.instantiate() +``` + +Then you can build the project documentation under the `docs/` sub-project: + +``` +julia --project=docs/ -e 'using Pkg; Pkg.instantiate()' +julia --project=docs/ docs/make.jl +``` + +The locally rendered HTML documentation can be viewed at `docs/build/index.html` \ No newline at end of file From 7e7c4dcf18708d08a6e740f53b86a70c9ec61125 Mon Sep 17 00:00:00 2001 From: Jake Bolewski Date: Tue, 23 Mar 2021 12:19:18 -0600 Subject: [PATCH 2/5] add API docs --- .github/workflows/Docs.yml | 2 +- .github/workflows/Tests.yml | 36 ++++++++++++------------- docs/make.jl | 10 ++++++- docs/src/API/CalibrateEmulateSample.md | 0 docs/src/API/GaussianProcessEmulator.md | 14 ++++++++++ docs/src/API/MarkovChainMonteCarlo.md | 9 +++++++ docs/src/API/Utilities.md | 0 src/GaussianProcessEmulator.jl | 5 ++-- 8 files changed, 53 insertions(+), 23 deletions(-) create mode 100644 docs/src/API/CalibrateEmulateSample.md create mode 100644 docs/src/API/GaussianProcessEmulator.md create mode 100644 docs/src/API/MarkovChainMonteCarlo.md create mode 100644 docs/src/API/Utilities.md diff --git a/.github/workflows/Docs.yml b/.github/workflows/Docs.yml index c38e14cea..601778969 100644 --- a/.github/workflows/Docs.yml +++ b/.github/workflows/Docs.yml @@ -44,4 +44,4 @@ jobs: env: GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }} JULIA_PROJECT: "docs/" - run: julia --color=yes --project=docs/ docs/make.jl \ No newline at end of file + run: julia --color=yes --project=docs/ docs/make.jl diff --git a/.github/workflows/Tests.yml b/.github/workflows/Tests.yml index 0ea6e313c..9939624e2 100644 --- a/.github/workflows/Tests.yml +++ b/.github/workflows/Tests.yml @@ -16,7 +16,7 @@ jobs: steps: - name: Cancel Previous Runs - uses: styfle/cancel-workflow-action@0.6.0 + uses: styfle/cancel-workflow-action@0.8.0 with: access_token: ${{ github.token }} @@ -26,7 +26,7 @@ jobs: - name: Set up Julia uses: julia-actions/setup-julia@v1 with: - version: 1.5 + version: 1.5.4 - name: Install Julia Project Packages # we add this ENV varaible to force PyCall to download and use Conda rather than @@ -34,25 +34,25 @@ jobs: env: PYTHON: "" run: | - julia --project=@. -e 'using Pkg; Pkg.instantiate()' + julia --project -e 'using Pkg; Pkg.instantiate()' - name: Install SciKitLearn Conda Package env: PYTHON: "" run: | - julia --project=@. -e 'using Conda; Conda.add("scikit-learn")' + julia --project -e 'using Conda; Conda.add("scikit-learn")' - name: Run Unit Tests env: PYTHON: "" run: | - julia --project=@. -e 'using Pkg; Pkg.test(coverage=true)' + julia --project -e 'using Pkg; Pkg.test(coverage=true)' - name: Generate coverage file run: | - julia --project=@. -e 'using Pkg; Pkg.add("Coverage"); - using Coverage; - LCOV.writefile("coverage-lcov.info", Codecov.process_folder())' + julia --project -e 'using Pkg; Pkg.add("Coverage"); + using Coverage; + LCOV.writefile("coverage-lcov.info", Codecov.process_folder())' if: success() - name: Submit coverage @@ -70,7 +70,7 @@ jobs: steps: - name: Cancel Previous Runs - uses: styfle/cancel-workflow-action@0.6.0 + uses: styfle/cancel-workflow-action@0.8.0 with: access_token: ${{ github.token }} @@ -80,25 +80,25 @@ jobs: - name: Set up Julia uses: julia-actions/setup-julia@v1 with: - version: 1.5 + version: 1.5.4 - name: Install Julia Project Packages env: PYTHON: "" run: | - julia --project=@. -e 'using Pkg; Pkg.instantiate()' + julia --project -e 'using Pkg; Pkg.instantiate()' - name: Install SciKitLearn Conda Package env: PYTHON: "" run: | - julia --project=@. -e 'using Conda; Conda.add("scikit-learn")' + julia --project -e 'using Conda; Conda.add("scikit-learn")' - name: Run Unit Tests env: PYTHON: "" run: | - LD_LIBRARY_PATH=$HOME/.julia/conda/3/lib julia --project=@. -e 'using Pkg; Pkg.test()' + LD_LIBRARY_PATH=$HOME/.julia/conda/3/lib julia --project -e 'using Pkg; Pkg.test()' test-windows: timeout-minutes: 60 @@ -109,7 +109,7 @@ jobs: steps: - name: Cancel Previous Runs - uses: styfle/cancel-workflow-action@0.6.0 + uses: styfle/cancel-workflow-action@0.8.0 with: access_token: ${{ github.token }} @@ -119,22 +119,22 @@ jobs: - name: Set up Julia uses: julia-actions/setup-julia@v1 with: - version: 1.5 + version: 1.5.4 - name: Install Julia Project Packages env: PYTHON: "" run: | - julia --project=@. -e 'using Pkg; Pkg.instantiate()' + julia --project -e 'using Pkg; Pkg.instantiate()' - name: Install SciKitLearn Conda Package env: PYTHON: "" run: | - julia --project=@. -e 'using Conda; Conda.add(\"scikit-learn\")' + julia --project -e 'using Conda; Conda.add(\"scikit-learn\")' - name: Run Unit Tests env: PYTHON: "" run: | - julia --project=@. -e 'using Pkg; Pkg.test()' + julia --project -e 'using Pkg; Pkg.test()' diff --git a/docs/make.jl b/docs/make.jl index 42668ca49..b5b8885f6 100644 --- a/docs/make.jl +++ b/docs/make.jl @@ -6,10 +6,18 @@ using Documenter # using DocumenterCitations #---------- +api = ["CalibrateEmulateSample" => [ + "GPEmulator" => "API/GaussianProcessEmulator.md", + "MarkovChainMonteCarlo" => "API/MarkovChainMonteCarlo.md", + "Utilities" => "API/Utilities.md" + ], +] + pages = [ "Home" => "index.md", "Installation instructions" => "installation_instructions.md", + "API" => api, ] #---------- @@ -37,4 +45,4 @@ if !isempty(get(ENV, "CI", "")) versions = ["stable" => "v^", "v#.#.#", "dev" => "dev"], push_preview = true, ) -end \ No newline at end of file +end diff --git a/docs/src/API/CalibrateEmulateSample.md b/docs/src/API/CalibrateEmulateSample.md new file mode 100644 index 000000000..e69de29bb diff --git a/docs/src/API/GaussianProcessEmulator.md b/docs/src/API/GaussianProcessEmulator.md new file mode 100644 index 000000000..a97b37f83 --- /dev/null +++ b/docs/src/API/GaussianProcessEmulator.md @@ -0,0 +1,14 @@ +# GaussianProcessEmulator + +```@meta +CurrentModule = CalibrateEmulateSample.GaussianProcessEmulator +``` + +```@docs +GaussianProcessesPackage +PredictionType +GaussianProcess +predict +svd_transform +svd_reverse_transform_mean_cov +``` \ No newline at end of file diff --git a/docs/src/API/MarkovChainMonteCarlo.md b/docs/src/API/MarkovChainMonteCarlo.md new file mode 100644 index 000000000..846a94d7f --- /dev/null +++ b/docs/src/API/MarkovChainMonteCarlo.md @@ -0,0 +1,9 @@ +# Utilities + +```@meta +CurrentModule = CalibrateEmulateSample.MarkovChainMonteCarlo +``` + +```@docs +MCMC +``` \ No newline at end of file diff --git a/docs/src/API/Utilities.md b/docs/src/API/Utilities.md new file mode 100644 index 000000000..e69de29bb diff --git a/src/GaussianProcessEmulator.jl b/src/GaussianProcessEmulator.jl index 00b656e56..199bf8e04 100644 --- a/src/GaussianProcessEmulator.jl +++ b/src/GaussianProcessEmulator.jl @@ -49,7 +49,7 @@ struct FType <: PredictionType end """ GaussianProcess{FT<:AbstractFloat} -Structure holding training input and the fitted Gaussian Process Regression + Structure holding training input and the fitted Gaussian Process Regression models. # Fields @@ -457,7 +457,6 @@ Note: If F::SVD is the factorization object, U, S, V and Vt can be obtained via F.U, F.S, F.V and F.Vt, such that A = U * Diagonal(S) * Vt. The singular values in S are sorted in descending order. """ - function svd_transform(data::Array{FT, 2}, obs_noise_cov::Union{Array{FT, 2}, Nothing}) where {FT} if obs_noise_cov != nothing decomposition = svd(obs_noise_cov) @@ -483,6 +482,7 @@ function svd_transform(data::Vector{FT}, obs_noise_cov::Union{Array{FT, 2}, Noth return transformed_data, decomposition end + """ svd_reverse_transform_mean_cov(μ::Array{FT, 2}, σ2::{Array{FT, 2}, decomposition::SVD) where {FT} @@ -497,7 +497,6 @@ elements on the main diagonal (i.e., the variances), we return the full covariance at each point, as a vector of length N_predicted_points, where each element is a matrix of size output_dim × output_dim """ - function svd_reverse_transform_mean_cov(μ::Array{FT, 2}, σ2::Array{FT, 2}, decomposition::SVD) where {FT} output_dim, N_predicted_points = size(σ2) From d3b6333222715d2bf59fc25963e9bcb427702dac Mon Sep 17 00:00:00 2001 From: Jake Bolewski Date: Tue, 23 Mar 2021 13:35:50 -0600 Subject: [PATCH 3/5] build and deploy docs against master / bors branch --- .github/workflows/Docs.yml | 6 ++++++ bors.toml | 1 + 2 files changed, 7 insertions(+) diff --git a/.github/workflows/Docs.yml b/.github/workflows/Docs.yml index 601778969..4b7afa04f 100644 --- a/.github/workflows/Docs.yml +++ b/.github/workflows/Docs.yml @@ -1,6 +1,12 @@ name: Documentation on: + push: + branches: + - master + - trying + - staging + tags: '*' pull_request: paths: - 'docs/**' diff --git a/bors.toml b/bors.toml index 0ea6ab4b7..bf8e1dd07 100644 --- a/bors.toml +++ b/bors.toml @@ -1,4 +1,5 @@ status = [ + 'docs-build', 'test-linux', 'test-macos', 'test-windows', From 17e9d742688f119002251484d74a0d1c66ffd9db Mon Sep 17 00:00:00 2001 From: Jake Bolewski Date: Tue, 23 Mar 2021 15:53:59 -0600 Subject: [PATCH 4/5] update julia to 1.5.4, check if precompilation issues are fixed --- .buildkite/pipeline.yml | 10 +++++----- 1 file changed, 5 insertions(+), 5 deletions(-) diff --git a/.buildkite/pipeline.yml b/.buildkite/pipeline.yml index 3dc2a36a1..c29c1a0b7 100644 --- a/.buildkite/pipeline.yml +++ b/.buildkite/pipeline.yml @@ -1,5 +1,5 @@ env: - JULIA_VERSION: "1.5.2" + JULIA_VERSION: "1.5.4" OPENBLAS_NUM_THREADS: 1 GKSwstype: nul @@ -30,7 +30,7 @@ steps: mkdir examples/Lorenz/depot export JULIA_DEPOT_PATH="$$(pwd)/examples/Lorenz/depot:$$JULIA_DEPOT_PATH" - julia --compiled-modules=no --color=yes --project -e ' + julia --color=yes --project -e ' println("--- Instantiating Project") using Pkg; Pkg.instantiate() @@ -55,7 +55,7 @@ steps: mkdir examples/GaussianProcessEmulator/depot export JULIA_DEPOT_PATH="$$(pwd)/examples/GaussianProcessEmulator/depot:$JULIA_DEPOT_PATH" - julia --compiled-modules=no --color=yes --project -e ' + julia --color=yes --project -e ' println("--- Instantiating Project") using Pkg; Pkg.instantiate() @@ -86,7 +86,7 @@ steps: mkdir examples/Cloudy/depot export JULIA_DEPOT_PATH="$$(pwd)/examples/Cloudy/depot:$$JULIA_DEPOT_PATH" - julia --compiled-modules=no --color=yes --project -e ' + julia --color=yes --project -e ' println("--- Instantiating Project") using Pkg; Pkg.instantiate() @@ -99,4 +99,4 @@ steps: agents: config: cpu queue: central - slurm_ntasks: 1 \ No newline at end of file + slurm_ntasks: 1 From 06e30761a55d5e5f044eec68bff72ee8167e73ca Mon Sep 17 00:00:00 2001 From: Jake Bolewski Date: Tue, 23 Mar 2021 16:24:59 -0600 Subject: [PATCH 5/5] pin to FFTW 1.3.0 --- examples/Cloudy/Manifest.toml | 252 ++++++------- examples/Cloudy/Project.toml | 4 + examples/Lorenz/Manifest.toml | 642 +++++++++++++++++++++++----------- examples/Lorenz/Project.toml | 3 + 4 files changed, 543 insertions(+), 358 deletions(-) diff --git a/examples/Cloudy/Manifest.toml b/examples/Cloudy/Manifest.toml index 85c787776..753e209fa 100644 --- a/examples/Cloudy/Manifest.toml +++ b/examples/Cloudy/Manifest.toml @@ -2,20 +2,15 @@ [[AbstractFFTs]] deps = ["LinearAlgebra"] -git-tree-sha1 = "485ee0867925449198280d4af84bdb46a2a404d0" +git-tree-sha1 = "051c95d6836228d120f5f4b984dd5aba1624f716" uuid = "621f4979-c628-5d54-868e-fcf4e3e8185c" -version = "1.0.1" - -[[AbstractTrees]] -git-tree-sha1 = "03e0550477d86222521d254b741d470ba17ea0b5" -uuid = "1520ce14-60c1-5f80-bbc7-55ef81b5835c" -version = "0.3.4" +version = "0.5.0" [[Adapt]] deps = ["LinearAlgebra"] -git-tree-sha1 = "345a14764e43fe927d6f5c250fe4c8e4664e6ee8" +git-tree-sha1 = "ffcfa2d345aaee0ef3d8346a073d5dd03c983ebe" uuid = "79e6a3ab-5dfb-504d-930d-738a2a938a0e" -version = "2.4.0" +version = "3.2.0" [[ArnoldiMethod]] deps = ["LinearAlgebra", "Random", "StaticArrays"] @@ -36,10 +31,10 @@ uuid = "68821587-b530-5797-8361-c406ea357684" version = "3.5.0+3" [[ArrayInterface]] -deps = ["LinearAlgebra", "Requires", "SparseArrays"] -git-tree-sha1 = "a2a1884863704e0414f6f164a1f6f4a2a62faf4e" +deps = ["IfElse", "LinearAlgebra", "Requires", "SparseArrays", "Static"] +git-tree-sha1 = "ce17bad65d0842b34a15fffc8879a9f68f08a67f" uuid = "4fba245c-0d91-5ea0-9b3e-6abc04ee57a9" -version = "2.14.17" +version = "3.1.6" [[ArrayLayouts]] deps = ["FillArrays", "LinearAlgebra"] @@ -135,9 +130,9 @@ version = "3.10.2" [[ColorTypes]] deps = ["FixedPointNumbers", "Random"] -git-tree-sha1 = "5e9769a17f17b587c951d57ba4319782b40c3513" +git-tree-sha1 = "32a2b8af383f11cbb65803883837a149d10dfe8a" uuid = "3da002f7-5984-5a60-b8a6-cbb66c0b333f" -version = "0.10.10" +version = "0.10.12" [[Colors]] deps = ["ColorTypes", "FixedPointNumbers", "InteractiveUtils", "Reexport"] @@ -179,12 +174,6 @@ git-tree-sha1 = "6231e40619c15148bcb80aa19d731e629877d762" uuid = "8f4d0f93-b110-5947-807f-2305c1781a2d" version = "1.5.1" -[[ConsoleProgressMonitor]] -deps = ["Logging", "ProgressMeter"] -git-tree-sha1 = "3ab7b2136722890b9af903859afcf457fa3059e8" -uuid = "88cd18e8-d9cc-4ea6-8889-5259c0d15c8b" -version = "0.1.2" - [[ConstructionBase]] deps = ["LinearAlgebra"] git-tree-sha1 = "48920211c95a6da1914a06c44ec94be70e84ffff" @@ -209,22 +198,16 @@ git-tree-sha1 = "08b72d2f2154e33dc2aeb1bfcd4a83cb283abd4f" uuid = "c36e975a-824b-4404-a568-ef97ca766997" version = "1.2.2" -[[CpuId]] -deps = ["Markdown", "Test"] -git-tree-sha1 = "f0464e499ab9973b43c20f8216d088b61fda80c6" -uuid = "adafc99b-e345-5852-983c-f28acb93d879" -version = "0.2.2" - [[DataAPI]] git-tree-sha1 = "dfb3b7e89e395be1e25c2ad6d7690dc29cc53b1d" uuid = "9a962f9c-6df0-11e9-0e5d-c546b8b5ee8a" version = "1.6.0" [[DataStructures]] -deps = ["InteractiveUtils", "OrderedCollections"] -git-tree-sha1 = "88d48e133e6d3dd68183309877eac74393daa7eb" +deps = ["Compat", "InteractiveUtils", "OrderedCollections"] +git-tree-sha1 = "4437b64df1e0adccc3e5d1adbc3ac741095e4677" uuid = "864edb3b-99cc-5e75-8d2d-829cb0a9cfe8" -version = "0.17.20" +version = "0.18.9" [[DataValueInterfaces]] git-tree-sha1 = "bfc1187b79289637fa0ef6d4436ebdfe6905cbd6" @@ -242,32 +225,32 @@ deps = ["Printf"] uuid = "ade2ca70-3891-5945-98fb-dc099432e06a" [[DelayDiffEq]] -deps = ["DataStructures", "DiffEqBase", "LinearAlgebra", "Logging", "OrdinaryDiffEq", "Printf", "RecursiveArrayTools", "Reexport", "Roots", "UnPack"] -git-tree-sha1 = "ede535e084589ca2ed626f4179337ac7fd610e7f" +deps = ["DataStructures", "DiffEqBase", "LinearAlgebra", "Logging", "NonlinearSolve", "OrdinaryDiffEq", "Printf", "RecursiveArrayTools", "Reexport", "UnPack"] +git-tree-sha1 = "0c7f367792397f754728a3db960d7ef1eb3d8f09" uuid = "bcd4f6db-9728-5f36-b5f7-82caef46ccdb" -version = "5.24.1" +version = "5.29.1" [[DelimitedFiles]] deps = ["Mmap"] uuid = "8bb1440f-4735-579b-a4ab-409b98df4dab" [[DiffEqBase]] -deps = ["ArrayInterface", "ChainRulesCore", "ConsoleProgressMonitor", "DataStructures", "Distributed", "DocStringExtensions", "FunctionWrappers", "IterativeSolvers", "IteratorInterfaceExtensions", "LabelledArrays", "LinearAlgebra", "Logging", "LoggingExtras", "MuladdMacro", "Parameters", "Printf", "ProgressLogging", "RecipesBase", "RecursiveArrayTools", "RecursiveFactorization", "Requires", "Roots", "SparseArrays", "StaticArrays", "Statistics", "SuiteSparse", "TableTraits", "TerminalLoggers", "TreeViews", "ZygoteRules"] -git-tree-sha1 = "4dde9a142bc3780f0216e564673f477ec6f6a6df" +deps = ["ArrayInterface", "ChainRulesCore", "DataStructures", "DocStringExtensions", "FunctionWrappers", "IterativeSolvers", "LabelledArrays", "LinearAlgebra", "Logging", "MuladdMacro", "NonlinearSolve", "Parameters", "Printf", "RecursiveArrayTools", "RecursiveFactorization", "Reexport", "Requires", "SciMLBase", "SparseArrays", "StaticArrays", "Statistics", "SuiteSparse", "ZygoteRules"] +git-tree-sha1 = "f5d290a67a2105b4cf531b0e3b5178106a661e39" uuid = "2b5f629d-d688-5b77-993f-72d75c75574e" -version = "6.44.3" +version = "6.57.9" [[DiffEqCallbacks]] deps = ["DataStructures", "DiffEqBase", "ForwardDiff", "LinearAlgebra", "NLsolve", "OrdinaryDiffEq", "RecipesBase", "RecursiveArrayTools", "StaticArrays"] -git-tree-sha1 = "63afe1bc146559c7329b6429713916c7f9e61d2f" +git-tree-sha1 = "d4c4a3f442ab749b6b895c514b0be984c75d6d67" uuid = "459566f4-90b8-5000-8ac3-15dfb0a30def" -version = "2.13.5" +version = "2.16.0" [[DiffEqDiffTools]] -deps = ["ArrayInterface", "LinearAlgebra", "Requires", "SparseArrays", "StaticArrays"] -git-tree-sha1 = "a4ed8a740484627ea41b47f7e1a25dd909a28353" +deps = ["LinearAlgebra", "SparseArrays", "StaticArrays"] +git-tree-sha1 = "b992345a39b4d9681342ae795a8dacc100730182" uuid = "01453d9d-ee7c-5054-8395-0335cb756afa" -version = "1.7.0" +version = "0.14.0" [[DiffEqFinancial]] deps = ["DiffEqBase", "DiffEqNoiseProcess", "LinearAlgebra", "Markdown", "RandomNumbers"] @@ -276,10 +259,10 @@ uuid = "5a0ffddc-d203-54b0-88ba-2c03c0fc2e67" version = "2.4.0" [[DiffEqJump]] -deps = ["ArrayInterface", "Compat", "DataStructures", "DiffEqBase", "FunctionWrappers", "LinearAlgebra", "Parameters", "PoissonRandom", "Random", "RandomNumbers", "RecursiveArrayTools", "StaticArrays", "Statistics", "TreeViews"] -git-tree-sha1 = "c9baaba9b1ee1407473a2daac1ca0ffdcb72253d" +deps = ["ArrayInterface", "Compat", "DataStructures", "DiffEqBase", "FunctionWrappers", "LinearAlgebra", "PoissonRandom", "Random", "RandomNumbers", "RecursiveArrayTools", "StaticArrays", "TreeViews", "UnPack"] +git-tree-sha1 = "3ec8d5eeb792897b28ef79a851d834ce1415498f" uuid = "c894b116-72e5-5b58-be3c-e6d8d4ac2b12" -version = "6.9.3" +version = "6.13.0" [[DiffEqNoiseProcess]] deps = ["DiffEqBase", "Distributions", "LinearAlgebra", "PoissonRandom", "Random", "Random123", "RandomNumbers", "RecipesBase", "RecursiveArrayTools", "Requires", "ResettableStacks", "StaticArrays", "Statistics"] @@ -335,9 +318,9 @@ version = "0.23.8" [[DocStringExtensions]] deps = ["LibGit2", "Markdown", "Pkg", "Test"] -git-tree-sha1 = "50ddf44c53698f5e784bbebb3f4b21c5807401b1" +git-tree-sha1 = "9d4f64f79012636741cf01133158a54b24924c32" uuid = "ffbed154-4ef7-542d-bbb7-c09d3a79fcae" -version = "0.8.3" +version = "0.8.4" [[EarCut_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] @@ -359,9 +342,9 @@ version = "0.2.2" [[ExponentialUtilities]] deps = ["LinearAlgebra", "Printf", "Requires", "SparseArrays"] -git-tree-sha1 = "4e7db935d55d4a11acb74856ee6cb113a7808c6f" +git-tree-sha1 = "712cb5af8db62836913970ee035a5fa742986f00" uuid = "d4d017d3-3776-5f7e-afef-a10c40355c18" -version = "1.8.0" +version = "1.8.1" [[FFMPEG]] deps = ["FFMPEG_jll", "x264_jll"] @@ -377,9 +360,9 @@ version = "4.3.1+4" [[FFTW]] deps = ["AbstractFFTs", "FFTW_jll", "IntelOpenMP_jll", "Libdl", "LinearAlgebra", "MKL_jll", "Reexport"] -git-tree-sha1 = "1b48dbde42f307e48685fa9213d8b9f8c0d87594" +git-tree-sha1 = "8fda0934cb99db617171f7296dc361f4d6fa5424" uuid = "7a1cc6ca-52ef-59f5-83cd-3a7055c09341" -version = "1.3.2" +version = "1.3.0" [[FFTW_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] @@ -424,9 +407,9 @@ version = "0.4.2" [[ForwardDiff]] deps = ["CommonSubexpressions", "DiffResults", "DiffRules", "NaNMath", "Random", "SpecialFunctions", "StaticArrays"] -git-tree-sha1 = "d48a40c0f54f29a5c8748cfb3225719accc72b77" +git-tree-sha1 = "c68fb7481b71519d313114dca639b35262ff105f" uuid = "f6369f11-7733-5829-9624-2563aa707210" -version = "0.10.16" +version = "0.10.17" [[FreeType2_jll]] deps = ["Artifacts", "Bzip2_jll", "JLLWrappers", "Libdl", "Pkg", "Zlib_jll"] @@ -445,6 +428,10 @@ git-tree-sha1 = "241552bc2209f0fa068b6415b1942cc0aa486bcc" uuid = "069b7b12-0de2-55c6-9aab-29f3d0a68a2e" version = "1.1.2" +[[Future]] +deps = ["Random"] +uuid = "9fa8497b-333b-5362-9e8d-4d0656e87820" + [[GR]] deps = ["Base64", "DelimitedFiles", "HTTP", "JSON", "LinearAlgebra", "Printf", "Random", "Serialization", "Sockets", "Test", "UUIDs"] git-tree-sha1 = "cd0f34bd097d4d5eb6bbe01778cf8a7ed35f29d9" @@ -463,12 +450,6 @@ git-tree-sha1 = "7dd404baf79b28f117917633f0cc1d2976c1fd9f" uuid = "6b9d7cbe-bcb9-11e9-073f-15a7a543e2eb" version = "0.2.8" -[[GenericSVD]] -deps = ["LinearAlgebra"] -git-tree-sha1 = "62909c3eda8a25b5673a367d1ad2392ebb265211" -uuid = "01680d73-4ee2-5a08-a1aa-533608c188bb" -version = "0.3.0" - [[GeometryBasics]] deps = ["EarCut_jll", "IterTools", "LinearAlgebra", "StaticArrays", "StructArrays", "Tables"] git-tree-sha1 = "c7f81b22b6c255861be4007a16bfdeb60e1c7f9b" @@ -504,6 +485,11 @@ git-tree-sha1 = "90ee39f9beaaa186e4968417ea2b8ed5673c91c0" uuid = "7869d1d1-7146-5819-86e3-90919afe41df" version = "0.3.3" +[[IfElse]] +git-tree-sha1 = "28e837ff3e7a6c3cdb252ce49fb412c8eb3caeef" +uuid = "615f187c-cbe4-4ef1-ba3b-2fcf58d6d173" +version = "0.1.0" + [[Inflate]] git-tree-sha1 = "f5fc07d4e706b84f72d54eedcc1c13d92fb0871c" uuid = "d25df0c9-e2be-5dd7-82c8-3ad0b3e990b9" @@ -538,9 +524,9 @@ version = "1.3.0" [[IterativeSolvers]] deps = ["LinearAlgebra", "Printf", "Random", "RecipesBase", "SparseArrays"] -git-tree-sha1 = "704eee044a41b0e7e8417f7dd2a6b6b5361afd5f" +git-tree-sha1 = "6f5ef3206d9dc6510a8b8e2334b96454a2ade590" uuid = "42fd0dbc-a981-5370-80f2-aaf504508153" -version = "0.8.5" +version = "0.9.0" [[IteratorInterfaceExtensions]] git-tree-sha1 = "a3f24677c21f5bbe9d2a714f95dcd58337fb2856" @@ -593,18 +579,6 @@ git-tree-sha1 = "864527aa4d14c893fb8c51d48ef314410c88c7b9" uuid = "23fbe1c1-3f47-55db-b15f-69d7ec21a316" version = "0.13.5" -[[LazyArtifacts]] -deps = ["Pkg"] -git-tree-sha1 = "4bb5499a1fc437342ea9ab7e319ede5a457c0968" -uuid = "4af54fe1-eca0-43a8-85a7-787d91b784e3" -version = "1.3.0" - -[[LeftChildRightSiblingTrees]] -deps = ["AbstractTrees"] -git-tree-sha1 = "71be1eb5ad19cb4f61fa8c73395c0338fd092ae0" -uuid = "1d6d02ad-be62-4b6b-8a6d-2f90e265016e" -version = "0.1.2" - [[LibGit2]] deps = ["Printf"] uuid = "76f85450-5226-5b5a-8eaa-529ad045b433" @@ -637,18 +611,6 @@ uuid = "37e2e46d-f89d-539d-b4ee-838fcccc9c8e" [[Logging]] uuid = "56ddb016-857b-54e1-b83d-db4d58db5568" -[[LoggingExtras]] -deps = ["Dates"] -git-tree-sha1 = "95e675246b58a7cb1199a90cd50a25850ff215c7" -uuid = "e6f89c97-d47a-5376-807f-9c37f3926c36" -version = "0.4.5" - -[[LoopVectorization]] -deps = ["DocStringExtensions", "LinearAlgebra", "OffsetArrays", "SIMDPirates", "SLEEFPirates", "UnPack", "VectorizationBase"] -git-tree-sha1 = "3242a8f411e19eda9adc49d0b877681975c11375" -uuid = "bdcacae8-1622-11e9-2a5c-532679323890" -version = "0.8.26" - [[METIS_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] git-tree-sha1 = "2dc1a9fc87e57e32b1fc186db78811157b30c118" @@ -656,15 +618,15 @@ uuid = "d00139f3-1899-568f-a2f0-47f597d42d70" version = "5.1.0+5" [[MKL_jll]] -deps = ["Artifacts", "IntelOpenMP_jll", "JLLWrappers", "LazyArtifacts", "Libdl", "Pkg"] -git-tree-sha1 = "c253236b0ed414624b083e6b72bfe891fbd2c7af" +deps = ["IntelOpenMP_jll", "Libdl", "Pkg"] +git-tree-sha1 = "eb540ede3aabb8284cb482aa41d00d6ca850b1f8" uuid = "856f044c-d86e-5d09-b602-aeab76dc8ba7" -version = "2021.1.1+1" +version = "2020.2.254+0" [[MLStyle]] -git-tree-sha1 = "937eda9ce36fcce082a42edd7181c8d23f4eb550" +git-tree-sha1 = "a667f58636b36ba10145d46a4afe70492850af8c" uuid = "d8e11817-5142-5d16-987a-aa16d5891078" -version = "0.4.6" +version = "0.4.9" [[MacroTools]] deps = ["Markdown", "Random"] @@ -703,10 +665,10 @@ version = "0.4.5" uuid = "a63ad114-7e13-5084-954f-fe012c677804" [[ModelingToolkit]] -deps = ["ArrayInterface", "DiffEqBase", "DiffRules", "Distributed", "DocStringExtensions", "GeneralizedGenerated", "Latexify", "LinearAlgebra", "MacroTools", "NaNMath", "SafeTestsets", "SparseArrays", "SpecialFunctions", "StaticArrays", "TreeViews", "UnPack", "Unitful"] -git-tree-sha1 = "b3a75a48ddb401d30b2548e72609c27675bde25f" +deps = ["DiffEqBase", "DiffRules", "Distributed", "DocStringExtensions", "GeneralizedGenerated", "Latexify", "LinearAlgebra", "MacroTools", "NaNMath", "SafeTestsets", "SparseArrays", "SpecialFunctions", "StaticArrays", "TreeViews", "Unitful"] +git-tree-sha1 = "2da0c371ce983b02afd6a957ba3c6b0aa977a3b3" uuid = "961ee093-0014-501f-94e3-6117800e7a78" -version = "3.1.1" +version = "2.0.0" [[MuladdMacro]] git-tree-sha1 = "c6190f9a7fc5d9d5915ab29f2134421b12d24a68" @@ -760,6 +722,12 @@ git-tree-sha1 = "9afd724797039125e8e2cc362098f01dab60bc3a" uuid = "b8a86587-4115-5ab1-83bc-aa920d37bbce" version = "0.4.8" +[[NonlinearSolve]] +deps = ["ArrayInterface", "FiniteDiff", "ForwardDiff", "IterativeSolvers", "LinearAlgebra", "RecursiveArrayTools", "RecursiveFactorization", "Reexport", "SciMLBase", "Setfield", "StaticArrays", "UnPack"] +git-tree-sha1 = "ef18e47df4f3917af35be5e5d7f5d97e8a83b0ec" +uuid = "8913a72c-1f9b-4ce2-8d82-65094dcecaec" +version = "0.3.8" + [[Observables]] git-tree-sha1 = "3469ef96607a6b9a1e89e54e6f23401073ed3126" uuid = "510215fc-4207-5dde-b226-833fc4488ee2" @@ -807,10 +775,10 @@ uuid = "bac558e1-5e72-5ebc-8fee-abe8a469f55d" version = "1.4.0" [[OrdinaryDiffEq]] -deps = ["Adapt", "ArrayInterface", "DataStructures", "DiffEqBase", "ExponentialUtilities", "FastClosures", "FiniteDiff", "ForwardDiff", "GenericSVD", "LinearAlgebra", "Logging", "MacroTools", "MuladdMacro", "NLsolve", "RecursiveArrayTools", "Reexport", "SparseArrays", "SparseDiffTools", "StaticArrays", "UnPack"] -git-tree-sha1 = "e6806009a3a5e74c5a6d44365c15b967daa7f798" +deps = ["Adapt", "ArrayInterface", "DataStructures", "DiffEqBase", "ExponentialUtilities", "FastClosures", "FiniteDiff", "ForwardDiff", "LinearAlgebra", "Logging", "MacroTools", "MuladdMacro", "NLsolve", "RecursiveArrayTools", "Reexport", "SparseArrays", "SparseDiffTools", "StaticArrays", "UnPack"] +git-tree-sha1 = "d22a75b8ae5b77543c4e1f8eae1ff01ce1f64453" uuid = "1dea7af3-3e70-54e6-95c3-0bf5283fa5ed" -version = "5.42.3" +version = "5.52.2" [[PDMats]] deps = ["LinearAlgebra", "SparseArrays", "SuiteSparse", "Test"] @@ -832,9 +800,9 @@ version = "0.12.2" [[Parsers]] deps = ["Dates"] -git-tree-sha1 = "223a825cccef2228f3fdbf2ecc7ca93363059073" +git-tree-sha1 = "c8abc88faa3f7a3950832ac5d6e690881590d6dc" uuid = "69de0a69-1ddd-5017-9359-2bf0b02dc9f0" -version = "1.0.16" +version = "1.1.0" [[Pkg]] deps = ["Dates", "LibGit2", "Libdl", "Logging", "Markdown", "Printf", "REPL", "Random", "SHA", "UUIDs"] @@ -879,12 +847,6 @@ version = "0.2.0" deps = ["Unicode"] uuid = "de0858da-6303-5e67-8744-51eddeeeb8d7" -[[ProgressLogging]] -deps = ["Logging", "SHA", "UUIDs"] -git-tree-sha1 = "80d919dee55b9c50e8d9e2da5eeafff3fe58b539" -uuid = "33c8b6b6-d38a-422a-b730-caa89a2f386c" -version = "0.1.4" - [[ProgressMeter]] deps = ["Distributed", "Printf"] git-tree-sha1 = "6e9c89cba09f6ef134b00e10625590746ba1e036" @@ -952,10 +914,10 @@ uuid = "731186ca-8d62-57ce-b412-fbd966d074cd" version = "2.11.0" [[RecursiveFactorization]] -deps = ["LinearAlgebra", "LoopVectorization", "VectorizationBase"] -git-tree-sha1 = "a135a7d12b7b1743b0d0564a16e5e8e0585d87e5" +deps = ["LinearAlgebra"] +git-tree-sha1 = "6761a5d1f9646affb2a369ff932841fff77934a3" uuid = "f2c3362d-daeb-58d1-803e-2bc74f2840b4" -version = "0.1.8" +version = "0.1.0" [[Reexport]] deps = ["Pkg"] @@ -982,32 +944,14 @@ uuid = "79098fc4-a85e-5d69-aa6a-4863f24498fa" version = "0.6.1" [[Rmath_jll]] -deps = ["Libdl", "Pkg"] -git-tree-sha1 = "d76185aa1f421306dec73c057aa384bad74188f0" +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] +git-tree-sha1 = "1b7bf41258f6c5c9c31df8c1ba34c1fc88674957" uuid = "f50d1b31-88e8-58de-be2c-1cc44531875f" -version = "0.2.2+1" - -[[Roots]] -deps = ["Printf"] -git-tree-sha1 = "369e25546984dff5df351bc056fccc30de615080" -uuid = "f2b01f46-fcfa-551c-844a-d8ac1e96c665" -version = "1.0.8" +version = "0.2.2+2" [[SHA]] uuid = "ea8e919c-243c-51af-8825-aaa63cd721ce" -[[SIMDPirates]] -deps = ["VectorizationBase"] -git-tree-sha1 = "a1b418634d6478bf2163920eae3b536dcc768626" -uuid = "21efa798-c60a-11e8-04d3-e1a92915a26a" -version = "0.8.26" - -[[SLEEFPirates]] -deps = ["Libdl", "SIMDPirates", "VectorizationBase"] -git-tree-sha1 = "67ae90a18aa8c22bf159318300e765fbd89ddf6e" -uuid = "476501e8-09a2-5ece-8869-fb82de89a1fa" -version = "0.5.5" - [[SafeTestsets]] deps = ["Test"] git-tree-sha1 = "36ebc5622c82eb9324005cc75e7e2cc51181d181" @@ -1016,9 +960,9 @@ version = "0.0.1" [[SciMLBase]] deps = ["ArrayInterface", "CommonSolve", "Distributed", "DocStringExtensions", "IteratorInterfaceExtensions", "LinearAlgebra", "Logging", "RecipesBase", "RecursiveArrayTools", "StaticArrays", "Statistics", "Tables", "TreeViews"] -git-tree-sha1 = "ad3dfcfb426011e894caa6dd38d2dc1ff6afc1ac" +git-tree-sha1 = "9dd06ee4a1238265ddf512851682cb3db326a8a8" uuid = "0bca4576-84f4-4d90-8ffe-ffa030f20462" -version = "1.8.2" +version = "1.8.5" [[ScikitLearnBase]] deps = ["LinearAlgebra", "Random", "Statistics"] @@ -1035,6 +979,12 @@ version = "1.2.16" [[Serialization]] uuid = "9e88b42a-f829-5b0c-bbe9-9e923198166b" +[[Setfield]] +deps = ["ConstructionBase", "Future", "MacroTools", "Requires"] +git-tree-sha1 = "d5640fc570fb1b6c54512f0bd3853866bd298b3e" +uuid = "efcf1570-3423-57d1-acb7-fd33fddbac46" +version = "0.7.0" + [[SharedArrays]] deps = ["Distributed", "Mmap", "Random", "Serialization"] uuid = "1a1011a3-84de-559e-8e89-a11a2f7dc383" @@ -1066,9 +1016,9 @@ uuid = "2f01184e-e22b-5df5-ae63-d93ebab69eaf" [[SparseDiffTools]] deps = ["Adapt", "ArrayInterface", "Compat", "DataStructures", "FiniteDiff", "ForwardDiff", "LightGraphs", "LinearAlgebra", "Requires", "SparseArrays", "VertexSafeGraphs"] -git-tree-sha1 = "93666e93899d995ec37abddde4811f533e49c074" +git-tree-sha1 = "d05bc362e3fa1b0e2361594a706fc63ffbd140f3" uuid = "47a9eef4-7e08-11e9-0b38-333d64bd3804" -version = "1.9.1" +version = "1.13.0" [[SpecialFunctions]] deps = ["BinDeps", "BinaryProvider", "Libdl"] @@ -1076,6 +1026,12 @@ git-tree-sha1 = "3bdd374b6fd78faf0119b8c5d538788dbf910c6e" uuid = "276daf66-3868-5448-9aa4-cd146d93841b" version = "0.8.0" +[[Static]] +deps = ["IfElse"] +git-tree-sha1 = "ddec5466a1d2d7e58adf9a427ba69763661aacf6" +uuid = "aedffcd0-7271-4cad-89d0-dc628f76c6d3" +version = "0.2.4" + [[StaticArrays]] deps = ["LinearAlgebra", "Random", "Statistics"] git-tree-sha1 = "da4cf579416c81994afd6322365d00916c79b8ae" @@ -1088,9 +1044,9 @@ uuid = "10745b16-79ce-11e8-11f9-7d13ad32a3b2" [[StatsBase]] deps = ["DataAPI", "DataStructures", "LinearAlgebra", "Missings", "Printf", "Random", "SortingAlgorithms", "SparseArrays", "Statistics"] -git-tree-sha1 = "400aa43f7de43aeccc5b2e39a76a79d262202b76" +git-tree-sha1 = "a83fa3021ac4c5a918582ec4721bc0cf70b495a9" uuid = "2913bbd2-ae8a-5f71-8c99-4fb6c76f3a91" -version = "0.33.3" +version = "0.33.4" [[StatsFuns]] deps = ["Rmath", "SpecialFunctions"] @@ -1112,9 +1068,9 @@ version = "1.6.1" [[StochasticDiffEq]] deps = ["ArrayInterface", "DataStructures", "DiffEqBase", "DiffEqJump", "DiffEqNoiseProcess", "FillArrays", "FiniteDiff", "ForwardDiff", "LinearAlgebra", "Logging", "MuladdMacro", "NLsolve", "OrdinaryDiffEq", "Random", "RandomNumbers", "RecursiveArrayTools", "Reexport", "SparseArrays", "SparseDiffTools", "StaticArrays", "UnPack"] -git-tree-sha1 = "ea25d14313775646f9aa4b2158156fb1b3815001" +git-tree-sha1 = "3109ce733c907b941eea4345b0644308e2c6da2d" uuid = "789caeaf-c7a9-5a7d-9973-96adeb23e2a0" -version = "6.25.0" +version = "6.33.1" [[StructArrays]] deps = ["Adapt", "DataAPI", "Tables"] @@ -1134,9 +1090,9 @@ version = "5.4.0+9" [[Sundials]] deps = ["CEnum", "DataStructures", "DiffEqBase", "Libdl", "LinearAlgebra", "Logging", "Reexport", "SparseArrays", "Sundials_jll"] -git-tree-sha1 = "0fc68b00d45b3882174d21a5841a1049769b9fd8" +git-tree-sha1 = "28db9e1a8fdd1b8e95cee064a6c2066897cf39c5" uuid = "c3572dad-4567-51f8-b174-8c6c989267f4" -version = "4.2.6" +version = "4.4.1" [[Sundials_jll]] deps = ["CompilerSupportLibraries_jll", "Libdl", "OpenBLAS_jll", "Pkg", "SuiteSparse_jll"] @@ -1158,21 +1114,15 @@ version = "1.0.0" [[Tables]] deps = ["DataAPI", "DataValueInterfaces", "IteratorInterfaceExtensions", "LinearAlgebra", "TableTraits", "Test"] -git-tree-sha1 = "a716dde43d57fa537a19058d044b495301ba6565" +git-tree-sha1 = "a9ff3dfec713c6677af435d6a6d65f9744feef67" uuid = "bd369af6-aec1-5ad0-b16a-f7cc5008161c" -version = "1.3.2" +version = "1.4.1" [[TaylorSeries]] deps = ["InteractiveUtils", "LinearAlgebra", "Markdown", "Requires", "SparseArrays"] -git-tree-sha1 = "80303b0c68665137fc75038445e4976ae8438754" +git-tree-sha1 = "39523982677336d055907fe734b30b9951b2cadc" uuid = "6aa5eb33-94cf-58f4-a9d0-e4b2c4fc25ea" -version = "0.10.10" - -[[TerminalLoggers]] -deps = ["LeftChildRightSiblingTrees", "Logging", "Markdown", "Printf", "ProgressLogging", "UUIDs"] -git-tree-sha1 = "e185a19bb9172f0cf5bc71233fab92a46f7ae154" -uuid = "5d786b92-1e48-4d6f-9151-6b4477ca9bed" -version = "0.1.3" +version = "0.10.11" [[Test]] deps = ["Distributed", "InteractiveUtils", "Logging", "Random"] @@ -1195,9 +1145,9 @@ deps = ["Random", "SHA"] uuid = "cf7118a7-6976-5b1a-9a39-7adc72f591a4" [[UnPack]] -git-tree-sha1 = "e0cb9715adda456f7657e45377fd3063bf87179a" +git-tree-sha1 = "387c1f73762231e86e0c9c5443ce3b4a0a9a0c2b" uuid = "3a884ed6-31ef-47d7-9d2a-63182c4928ed" -version = "0.1.0" +version = "1.0.2" [[Unicode]] uuid = "4ec0a83e-493e-50e2-b9ac-8f72acf5a8f5" @@ -1208,12 +1158,6 @@ git-tree-sha1 = "fdfbea79b5b9a305bf226eb4730321f603281290" uuid = "1986cc42-f94f-5a68-af5c-568840ba703d" version = "1.6.0" -[[VectorizationBase]] -deps = ["CpuId", "Libdl", "LinearAlgebra"] -git-tree-sha1 = "03e2fbb479a1ea350398195b6fbf439bae0f8260" -uuid = "3d5dd08c-fd9d-11e8-17fa-ed2836048c2f" -version = "0.12.33" - [[VersionParsing]] git-tree-sha1 = "80229be1f670524750d905f8fc8148e5a8c4537f" uuid = "81def892-9a0e-5fdd-b105-ffc91e053289" diff --git a/examples/Cloudy/Project.toml b/examples/Cloudy/Project.toml index 26d166615..3b44ceb65 100644 --- a/examples/Cloudy/Project.toml +++ b/examples/Cloudy/Project.toml @@ -4,6 +4,7 @@ Conda = "8f4d0f93-b110-5947-807f-2305c1781a2d" DifferentialEquations = "0c46a032-eb83-5123-abaf-570d42b7fbaa" Distributions = "31c24e10-a181-5473-b8eb-7969acd0382f" DocStringExtensions = "ffbed154-4ef7-542d-bbb7-c09d3a79fcae" +FFTW = "7a1cc6ca-52ef-59f5-83cd-3a7055c09341" GaussianProcesses = "891a1506-143c-57d2-908e-e1f8e92e6de9" LinearAlgebra = "37e2e46d-f89d-539d-b4ee-838fcccc9c8e" Pkg = "44cfe95a-1eb2-52ea-b672-e2afdf69b78f" @@ -12,3 +13,6 @@ Random = "9a3f8284-a2c9-5f02-9a11-845980a1fd5c" StatsBase = "2913bbd2-ae8a-5f71-8c99-4fb6c76f3a91" StatsPlots = "f3b207a7-027a-5e70-b257-86293d7955fd" Sundials = "c3572dad-4567-51f8-b174-8c6c989267f4" + +[compat] +FFTW = "= 1.3.0" diff --git a/examples/Lorenz/Manifest.toml b/examples/Lorenz/Manifest.toml index 97946c27c..575e711eb 100644 --- a/examples/Lorenz/Manifest.toml +++ b/examples/Lorenz/Manifest.toml @@ -2,15 +2,15 @@ [[AbstractAlgebra]] deps = ["InteractiveUtils", "LinearAlgebra", "Markdown", "Random", "RandomExtensions", "SparseArrays", "Test"] -git-tree-sha1 = "8a53c65dbc0423738c855abc42ea0c925ea1608b" +git-tree-sha1 = "b773e53c62456c2937fef7e1ddd81a6bb421d81a" uuid = "c3fe647b-3220-5bb0-a1ea-a7954cac585d" -version = "0.11.2" +version = "0.14.0" [[AbstractFFTs]] deps = ["LinearAlgebra"] -git-tree-sha1 = "485ee0867925449198280d4af84bdb46a2a404d0" +git-tree-sha1 = "051c95d6836228d120f5f4b984dd5aba1624f716" uuid = "621f4979-c628-5d54-868e-fcf4e3e8185c" -version = "1.0.1" +version = "0.5.0" [[AbstractTrees]] git-tree-sha1 = "03e0550477d86222521d254b741d470ba17ea0b5" @@ -19,9 +19,9 @@ version = "0.3.4" [[Adapt]] deps = ["LinearAlgebra"] -git-tree-sha1 = "345a14764e43fe927d6f5c250fe4c8e4664e6ee8" +git-tree-sha1 = "ffcfa2d345aaee0ef3d8346a073d5dd03c983ebe" uuid = "79e6a3ab-5dfb-504d-930d-738a2a938a0e" -version = "2.4.0" +version = "3.2.0" [[ArnoldiMethod]] deps = ["LinearAlgebra", "Random", "StaticArrays"] @@ -42,16 +42,16 @@ uuid = "68821587-b530-5797-8361-c406ea357684" version = "3.5.0+3" [[ArrayInterface]] -deps = ["LinearAlgebra", "Requires", "SparseArrays"] -git-tree-sha1 = "a2a1884863704e0414f6f164a1f6f4a2a62faf4e" +deps = ["IfElse", "LinearAlgebra", "Requires", "SparseArrays"] +git-tree-sha1 = "ee07ae00e3cc277dcfa5507ce25be522313ecc3e" uuid = "4fba245c-0d91-5ea0-9b3e-6abc04ee57a9" -version = "2.14.17" +version = "3.1.1" [[ArrayLayouts]] -deps = ["FillArrays", "LinearAlgebra"] -git-tree-sha1 = "951c3fc1ff93497c88fb1dfa893f4de55d0b38e3" +deps = ["Compat", "FillArrays", "LinearAlgebra", "SparseArrays"] +git-tree-sha1 = "a577e27915fdcb3f6b96118b56655b38e3b466f2" uuid = "4c555306-a7a7-4459-81d9-ec55ddd5c99a" -version = "0.3.8" +version = "0.4.12" [[Artifacts]] deps = ["Pkg"] @@ -66,20 +66,14 @@ uuid = "13072b0f-2c55-5437-9ae7-d433b7a33950" version = "1.0.0" [[BandedMatrices]] -deps = ["ArrayLayouts", "FillArrays", "LinearAlgebra", "Random", "SparseArrays"] -git-tree-sha1 = "eaf98fa821ab26c5825fa3a054db735755c335da" +deps = ["ArrayLayouts", "Compat", "FillArrays", "LinearAlgebra", "Random", "SparseArrays"] +git-tree-sha1 = "8c83ee44dc9835263760ad4e77ed4eed4b3490c1" uuid = "aae01518-5342-5314-be14-df237901396f" -version = "0.15.15" +version = "0.15.25" [[Base64]] uuid = "2a0f44e3-6c83-55bd-87e4-b1978d98bd5f" -[[BinaryProvider]] -deps = ["Libdl", "Logging", "SHA"] -git-tree-sha1 = "ecdec412a9abc8db54c0efc5548c64dfce072058" -uuid = "b99e7846-7c00-51b0-8f62-c81ae34c0232" -version = "0.5.10" - [[BoundaryValueDiffEq]] deps = ["BandedMatrices", "DiffEqBase", "FiniteDiff", "ForwardDiff", "LinearAlgebra", "NLsolve", "Reexport", "SparseArrays"] git-tree-sha1 = "fe34902ac0c3a35d016617ab7032742865756d7d" @@ -97,11 +91,11 @@ git-tree-sha1 = "215a9aa4a1f23fbd05b92769fdd62559488d70e9" uuid = "fa961155-64e5-5f13-b03f-caf6b980ea82" version = "0.4.1" -[[CanonicalTraits]] -deps = ["MLStyle"] -git-tree-sha1 = "f959d0e7164fb0262b02abecb93cf42b9a9f3188" -uuid = "a603d957-0e48-4f86-8fbd-0b7bc66df689" -version = "0.2.4" +[[Cairo_jll]] +deps = ["Artifacts", "Bzip2_jll", "Fontconfig_jll", "FreeType2_jll", "Glib_jll", "JLLWrappers", "LZO_jll", "Libdl", "Pixman_jll", "Pkg", "Xorg_libXext_jll", "Xorg_libXrender_jll", "Zlib_jll", "libpng_jll"] +git-tree-sha1 = "e2f47f6d8337369411569fd45ae5753ca10394c6" +uuid = "83423d85-b0ee-5818-9007-b63ccbeb887a" +version = "1.16.0+6" [[CategoricalArrays]] deps = ["DataAPI", "Future", "JSON", "Missings", "Printf", "Statistics", "StructTypes", "Unicode"] @@ -109,6 +103,12 @@ git-tree-sha1 = "dbfddfafb75fae5356e00529ce67454125935945" uuid = "324d7699-5711-5eae-9e2f-1d82baa6b597" version = "0.9.3" +[[ChainRules]] +deps = ["ChainRulesCore", "Compat", "LinearAlgebra", "Random", "Reexport", "Requires", "Statistics"] +git-tree-sha1 = "e01f521443e3700f40ad3c7c1c6aa3a6940aaea1" +uuid = "082447d4-558c-5d27-93f4-14fc19e9eca2" +version = "0.7.54" + [[ChainRulesCore]] deps = ["Compat", "LinearAlgebra", "SparseArrays"] git-tree-sha1 = "de4f08843c332d355852721adb1592bce7924da3" @@ -135,9 +135,9 @@ version = "3.10.2" [[ColorTypes]] deps = ["FixedPointNumbers", "Random"] -git-tree-sha1 = "5e9769a17f17b587c951d57ba4319782b40c3513" +git-tree-sha1 = "32a2b8af383f11cbb65803883837a149d10dfe8a" uuid = "3da002f7-5984-5a60-b8a6-cbb66c0b333f" -version = "0.10.10" +version = "0.10.12" [[Colors]] deps = ["ColorTypes", "FixedPointNumbers", "InteractiveUtils", "Reexport"] @@ -179,12 +179,6 @@ git-tree-sha1 = "6231e40619c15148bcb80aa19d731e629877d762" uuid = "8f4d0f93-b110-5947-807f-2305c1781a2d" version = "1.5.1" -[[ConsoleProgressMonitor]] -deps = ["Logging", "ProgressMeter"] -git-tree-sha1 = "3ab7b2136722890b9af903859afcf457fa3059e8" -uuid = "88cd18e8-d9cc-4ea6-8889-5259c0d15c8b" -version = "0.1.2" - [[ConstructionBase]] deps = ["LinearAlgebra"] git-tree-sha1 = "48920211c95a6da1914a06c44ec94be70e84ffff" @@ -220,10 +214,10 @@ uuid = "a93c6f00-e57d-5684-b7b6-d8193f3e46c0" version = "0.22.5" [[DataStructures]] -deps = ["InteractiveUtils", "OrderedCollections"] -git-tree-sha1 = "88d48e133e6d3dd68183309877eac74393daa7eb" +deps = ["Compat", "InteractiveUtils", "OrderedCollections"] +git-tree-sha1 = "4437b64df1e0adccc3e5d1adbc3ac741095e4677" uuid = "864edb3b-99cc-5e75-8d2d-829cb0a9cfe8" -version = "0.17.20" +version = "0.18.9" [[DataValueInterfaces]] git-tree-sha1 = "bfc1187b79289637fa0ef6d4436ebdfe6905cbd6" @@ -241,26 +235,26 @@ deps = ["Printf"] uuid = "ade2ca70-3891-5945-98fb-dc099432e06a" [[DelayDiffEq]] -deps = ["DataStructures", "DiffEqBase", "LinearAlgebra", "Logging", "OrdinaryDiffEq", "Printf", "RecursiveArrayTools", "Reexport", "Roots", "UnPack"] -git-tree-sha1 = "ede535e084589ca2ed626f4179337ac7fd610e7f" +deps = ["DataStructures", "DiffEqBase", "LinearAlgebra", "Logging", "NonlinearSolve", "OrdinaryDiffEq", "Printf", "RecursiveArrayTools", "Reexport", "UnPack"] +git-tree-sha1 = "0c7f367792397f754728a3db960d7ef1eb3d8f09" uuid = "bcd4f6db-9728-5f36-b5f7-82caef46ccdb" -version = "5.24.1" +version = "5.29.1" [[DelimitedFiles]] deps = ["Mmap"] uuid = "8bb1440f-4735-579b-a4ab-409b98df4dab" [[DiffEqBase]] -deps = ["ArrayInterface", "ChainRulesCore", "ConsoleProgressMonitor", "DataStructures", "Distributed", "DocStringExtensions", "FunctionWrappers", "IterativeSolvers", "IteratorInterfaceExtensions", "LabelledArrays", "LinearAlgebra", "Logging", "LoggingExtras", "MuladdMacro", "Parameters", "Printf", "ProgressLogging", "RecipesBase", "RecursiveArrayTools", "RecursiveFactorization", "Requires", "Roots", "SparseArrays", "StaticArrays", "Statistics", "SuiteSparse", "TableTraits", "TerminalLoggers", "TreeViews", "ZygoteRules"] -git-tree-sha1 = "4dde9a142bc3780f0216e564673f477ec6f6a6df" +deps = ["ArrayInterface", "ChainRulesCore", "DataStructures", "DocStringExtensions", "FunctionWrappers", "IterativeSolvers", "LabelledArrays", "LinearAlgebra", "Logging", "MuladdMacro", "NonlinearSolve", "Parameters", "Printf", "RecursiveArrayTools", "RecursiveFactorization", "Reexport", "Requires", "SciMLBase", "SparseArrays", "StaticArrays", "Statistics", "SuiteSparse", "ZygoteRules"] +git-tree-sha1 = "f5d290a67a2105b4cf531b0e3b5178106a661e39" uuid = "2b5f629d-d688-5b77-993f-72d75c75574e" -version = "6.44.3" +version = "6.57.9" [[DiffEqCallbacks]] deps = ["DataStructures", "DiffEqBase", "ForwardDiff", "LinearAlgebra", "NLsolve", "OrdinaryDiffEq", "RecipesBase", "RecursiveArrayTools", "StaticArrays"] -git-tree-sha1 = "63afe1bc146559c7329b6429713916c7f9e61d2f" +git-tree-sha1 = "d4c4a3f442ab749b6b895c514b0be984c75d6d67" uuid = "459566f4-90b8-5000-8ac3-15dfb0a30def" -version = "2.13.5" +version = "2.16.0" [[DiffEqFinancial]] deps = ["DiffEqBase", "DiffEqNoiseProcess", "LinearAlgebra", "Markdown", "RandomNumbers"] @@ -270,9 +264,9 @@ version = "2.4.0" [[DiffEqJump]] deps = ["ArrayInterface", "Compat", "DataStructures", "DiffEqBase", "FunctionWrappers", "LinearAlgebra", "PoissonRandom", "Random", "RandomNumbers", "RecursiveArrayTools", "StaticArrays", "TreeViews", "UnPack"] -git-tree-sha1 = "97c44c5f94827bb4605e4c72b652629a9d6d10d4" +git-tree-sha1 = "3ec8d5eeb792897b28ef79a851d834ce1415498f" uuid = "c894b116-72e5-5b58-be3c-e6d8d4ac2b12" -version = "6.10.0" +version = "6.13.0" [[DiffEqNoiseProcess]] deps = ["DiffEqBase", "Distributions", "LinearAlgebra", "Optim", "PoissonRandom", "QuadGK", "Random", "Random123", "RandomNumbers", "RecipesBase", "RecursiveArrayTools", "Requires", "ResettableStacks", "StaticArrays", "Statistics"] @@ -321,16 +315,16 @@ deps = ["Random", "Serialization", "Sockets"] uuid = "8ba89e20-285c-5b6f-9357-94700520ee1b" [[Distributions]] -deps = ["FillArrays", "LinearAlgebra", "PDMats", "Printf", "QuadGK", "Random", "SpecialFunctions", "Statistics", "StatsBase", "StatsFuns"] -git-tree-sha1 = "9c41285c57c6e0d73a21ed4b65f6eec34805f937" +deps = ["FillArrays", "LinearAlgebra", "PDMats", "Printf", "QuadGK", "Random", "SparseArrays", "SpecialFunctions", "Statistics", "StatsBase", "StatsFuns"] +git-tree-sha1 = "e64debe8cd174cc52d7dd617ebc5492c6f8b698c" uuid = "31c24e10-a181-5473-b8eb-7969acd0382f" -version = "0.23.8" +version = "0.24.15" [[DocStringExtensions]] deps = ["LibGit2", "Markdown", "Pkg", "Test"] -git-tree-sha1 = "50ddf44c53698f5e784bbebb3f4b21c5807401b1" +git-tree-sha1 = "9d4f64f79012636741cf01133158a54b24924c32" uuid = "ffbed154-4ef7-542d-bbb7-c09d3a79fcae" -version = "0.8.3" +version = "0.8.4" [[EarCut_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] @@ -350,11 +344,22 @@ git-tree-sha1 = "5157c93fe9431a041e4cd84265dfce3d53a52323" uuid = "2904ab23-551e-5aed-883f-487f97af5226" version = "0.2.2" +[[Expat_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] +git-tree-sha1 = "1402e52fcda25064f51c77a9655ce8680b76acf0" +uuid = "2e619515-83b5-522b-bb60-26c02a35a201" +version = "2.2.7+6" + [[ExponentialUtilities]] deps = ["LinearAlgebra", "Printf", "Requires", "SparseArrays"] -git-tree-sha1 = "4e7db935d55d4a11acb74856ee6cb113a7808c6f" +git-tree-sha1 = "712cb5af8db62836913970ee035a5fa742986f00" uuid = "d4d017d3-3776-5f7e-afef-a10c40355c18" -version = "1.8.0" +version = "1.8.1" + +[[ExprTools]] +git-tree-sha1 = "10407a39b87f29d47ebaca8edbc75d7c302ff93e" +uuid = "e2ba6199-217a-4e67-a87a-7c52f15ade04" +version = "0.1.3" [[FFMPEG]] deps = ["FFMPEG_jll", "x264_jll"] @@ -370,9 +375,9 @@ version = "4.3.1+4" [[FFTW]] deps = ["AbstractFFTs", "FFTW_jll", "IntelOpenMP_jll", "Libdl", "LinearAlgebra", "MKL_jll", "Reexport"] -git-tree-sha1 = "1b48dbde42f307e48685fa9213d8b9f8c0d87594" +git-tree-sha1 = "8fda0934cb99db617171f7296dc361f4d6fa5424" uuid = "7a1cc6ca-52ef-59f5-83cd-3a7055c09341" -version = "1.3.2" +version = "1.3.0" [[FFTW_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] @@ -386,16 +391,16 @@ uuid = "9aa1b823-49e4-5ca5-8b0f-3971ec8bab6a" version = "0.3.2" [[FastGaussQuadrature]] -deps = ["LinearAlgebra", "SpecialFunctions"] -git-tree-sha1 = "6ea5f7b4aecce0e3a14ca1da03f62f86148c8fa3" +deps = ["LinearAlgebra", "SpecialFunctions", "StaticArrays"] +git-tree-sha1 = "5829b25887e53fb6730a9df2ff89ed24baa6abf6" uuid = "442a2c76-b920-505d-bb47-c5924d526838" -version = "0.4.5" +version = "0.4.7" [[FillArrays]] deps = ["LinearAlgebra", "Random", "SparseArrays"] -git-tree-sha1 = "4863cbb7910079369e258dee4add9d06ead5063a" +git-tree-sha1 = "ff537e5a3cba92fb48f30fec46723510450f2c0e" uuid = "1a297f60-69ca-5386-bcde-b61e274b549b" -version = "0.8.14" +version = "0.10.2" [[FiniteDiff]] deps = ["ArrayInterface", "LinearAlgebra", "Requires", "SparseArrays", "StaticArrays"] @@ -409,6 +414,12 @@ git-tree-sha1 = "335bfdceacc84c5cdf16aadc768aa5ddfc5383cc" uuid = "53c48c17-4a7d-5ca2-90c5-79b7896eea93" version = "0.8.4" +[[Fontconfig_jll]] +deps = ["Artifacts", "Bzip2_jll", "Expat_jll", "FreeType2_jll", "JLLWrappers", "Libdl", "Libuuid_jll", "Pkg", "Zlib_jll"] +git-tree-sha1 = "35895cf184ceaab11fd778b4590144034a167a2f" +uuid = "a3f928ae-7b40-5064-980b-68af3947d34b" +version = "2.13.1+14" + [[Formatting]] deps = ["Printf"] git-tree-sha1 = "8339d61043228fdd3eb658d86c926cb282ae72a8" @@ -417,9 +428,9 @@ version = "0.4.2" [[ForwardDiff]] deps = ["CommonSubexpressions", "DiffResults", "DiffRules", "NaNMath", "Random", "SpecialFunctions", "StaticArrays"] -git-tree-sha1 = "d48a40c0f54f29a5c8748cfb3225719accc72b77" +git-tree-sha1 = "c68fb7481b71519d313114dca639b35262ff105f" uuid = "f6369f11-7733-5829-9624-2563aa707210" -version = "0.10.16" +version = "0.10.17" [[FreeType2_jll]] deps = ["Artifacts", "Bzip2_jll", "JLLWrappers", "Libdl", "Pkg", "Zlib_jll"] @@ -442,11 +453,23 @@ version = "1.1.2" deps = ["Random"] uuid = "9fa8497b-333b-5362-9e8d-4d0656e87820" +[[GLFW_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Libglvnd_jll", "Pkg", "Xorg_libXcursor_jll", "Xorg_libXi_jll", "Xorg_libXinerama_jll", "Xorg_libXrandr_jll"] +git-tree-sha1 = "bd1dbf065d7a4a0bdf7e74dd26cf932dda22b929" +uuid = "0656b61e-2033-5cc2-a64a-77c0f6c09b89" +version = "3.3.3+0" + [[GR]] -deps = ["Base64", "DelimitedFiles", "HTTP", "JSON", "LinearAlgebra", "Printf", "Random", "Serialization", "Sockets", "Test", "UUIDs"] -git-tree-sha1 = "cd0f34bd097d4d5eb6bbe01778cf8a7ed35f29d9" +deps = ["Base64", "DelimitedFiles", "GR_jll", "HTTP", "JSON", "LinearAlgebra", "Pkg", "Printf", "Random", "Serialization", "Sockets", "Test", "UUIDs"] +git-tree-sha1 = "12d971c928b7ecf19b748a2c7df6a365690dbf2c" uuid = "28b8d3ca-fb5f-59d9-8090-bfdbd6d07a71" -version = "0.52.0" +version = "0.55.0" + +[[GR_jll]] +deps = ["Artifacts", "Bzip2_jll", "Cairo_jll", "FFMPEG_jll", "Fontconfig_jll", "GLFW_jll", "JLLWrappers", "JpegTurbo_jll", "Libdl", "Libtiff_jll", "Pixman_jll", "Pkg", "Qt_jll", "Zlib_jll", "libpng_jll"] +git-tree-sha1 = "8aee6fa096b0cbdb05e71750c978b96a08c78951" +uuid = "d2c73de3-f751-5644-a686-071e5b155ba9" +version = "0.53.0+0" [[GaussianProcesses]] deps = ["Distances", "Distributions", "ElasticArrays", "ElasticPDMats", "FastGaussQuadrature", "ForwardDiff", "LinearAlgebra", "Optim", "PDMats", "Printf", "ProgressMeter", "Random", "RecipesBase", "ScikitLearnBase", "SpecialFunctions", "StaticArrays", "Statistics", "StatsFuns", "Zygote"] @@ -454,29 +477,23 @@ git-tree-sha1 = "06f890e71136832f1c577aa443d3777ffa9594fa" uuid = "891a1506-143c-57d2-908e-e1f8e92e6de9" version = "0.12.3" -[[GeneralizedGenerated]] -deps = ["CanonicalTraits", "DataStructures", "JuliaVariables", "MLStyle"] -git-tree-sha1 = "7dd404baf79b28f117917633f0cc1d2976c1fd9f" -uuid = "6b9d7cbe-bcb9-11e9-073f-15a7a543e2eb" -version = "0.2.8" - -[[GenericSVD]] -deps = ["LinearAlgebra"] -git-tree-sha1 = "62909c3eda8a25b5673a367d1ad2392ebb265211" -uuid = "01680d73-4ee2-5a08-a1aa-533608c188bb" -version = "0.3.0" - [[GeometryBasics]] deps = ["EarCut_jll", "IterTools", "LinearAlgebra", "StaticArrays", "StructArrays", "Tables"] git-tree-sha1 = "c7f81b22b6c255861be4007a16bfdeb60e1c7f9b" uuid = "5c1252a2-5f33-56bf-86c9-59e7332b4326" version = "0.3.11" -[[GeometryTypes]] -deps = ["ColorTypes", "FixedPointNumbers", "LinearAlgebra", "StaticArrays"] -git-tree-sha1 = "07194161fe4e181c6bf51ef2e329ec4e7d050fc4" -uuid = "4d00f742-c7ba-57c2-abde-4428a4b178cb" -version = "0.8.4" +[[Gettext_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Libiconv_jll", "Pkg", "XML2_jll"] +git-tree-sha1 = "8c14294a079216000a0bdca5ec5a447f073ddc9d" +uuid = "78b55507-aeef-58d4-861c-77aaff3498b1" +version = "0.20.1+7" + +[[Glib_jll]] +deps = ["Artifacts", "Gettext_jll", "JLLWrappers", "Libdl", "Libffi_jll", "Libiconv_jll", "Libmount_jll", "PCRE_jll", "Pkg", "Zlib_jll"] +git-tree-sha1 = "04690cc5008b38ecbdfede949220bc7d9ba26397" +uuid = "7746bdde-850d-59dc-9ae8-88ece973131d" +version = "2.59.0+4" [[Grisu]] git-tree-sha1 = "03d381f65183cb2d0af8b3425fde97263ce9a995" @@ -491,9 +508,9 @@ version = "0.8.19" [[IRTools]] deps = ["InteractiveUtils", "MacroTools", "Test"] -git-tree-sha1 = "90ee39f9beaaa186e4968417ea2b8ed5673c91c0" +git-tree-sha1 = "c67e7515a11f726f44083e74f218d134396d6510" uuid = "7869d1d1-7146-5819-86e3-90919afe41df" -version = "0.3.3" +version = "0.4.2" [[IfElse]] git-tree-sha1 = "28e837ff3e7a6c3cdb252ce49fb412c8eb3caeef" @@ -540,9 +557,9 @@ version = "1.3.0" [[IterativeSolvers]] deps = ["LinearAlgebra", "Printf", "Random", "RecipesBase", "SparseArrays"] -git-tree-sha1 = "704eee044a41b0e7e8417f7dd2a6b6b5361afd5f" +git-tree-sha1 = "6f5ef3206d9dc6510a8b8e2334b96454a2ade590" uuid = "42fd0dbc-a981-5370-80f2-aaf504508153" -version = "0.8.5" +version = "0.9.0" [[IteratorInterfaceExtensions]] git-tree-sha1 = "a3f24677c21f5bbe9d2a714f95dcd58337fb2856" @@ -551,9 +568,9 @@ version = "1.0.0" [[JLD2]] deps = ["CodecZlib", "DataStructures", "MacroTools", "Mmap", "Pkg", "Printf", "Requires", "UUIDs"] -git-tree-sha1 = "9378bd9d392569c94d1722d4926ef9857b8f76fd" +git-tree-sha1 = "9f2f2f24e60305feb6ae293a617ddf06f429efc3" uuid = "033835bb-8acc-5ee8-8aae-3f567f8a3819" -version = "0.3.3" +version = "0.4.3" [[JLLWrappers]] git-tree-sha1 = "a431f5f2ca3f4feef3bd7a5e94b8b8d4f2f647a0" @@ -566,11 +583,11 @@ git-tree-sha1 = "81690084b6198a2e1da36fcfda16eeca9f9f24e4" uuid = "682c06a0-de6a-54ab-a142-c8b1cf79cde6" version = "0.21.1" -[[JuliaVariables]] -deps = ["MLStyle", "NameResolution"] -git-tree-sha1 = "49fb3cb53362ddadb4415e9b73926d6b40709e70" -uuid = "b14d175d-62b4-44ba-8fb7-3064adc8c3ec" -version = "0.2.4" +[[JpegTurbo_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] +git-tree-sha1 = "9aff0587d9603ea0de2c6f6300d9f9492bbefbd3" +uuid = "aacddb02-875f-59d6-b918-886e6ef4fbf8" +version = "2.0.1+3" [[KernelDensity]] deps = ["Distributions", "DocStringExtensions", "FFTW", "Interpolations", "StatsBase"] @@ -584,6 +601,12 @@ git-tree-sha1 = "df381151e871f41ee86cee4f5f6fd598b8a68826" uuid = "c1c5ebd0-6772-5130-a774-d5fcae4a789d" version = "3.100.0+3" +[[LZO_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] +git-tree-sha1 = "f128cd6cd05ffd6d3df0523ed99b90ff6f9b349a" +uuid = "dd4b983a-f0e5-5f8d-a1b7-129d4a5fb1ac" +version = "2.10.0+3" + [[LaTeXStrings]] git-tree-sha1 = "c7f1c695e06c01b95a67f0cd1d34994f3e7db104" uuid = "b964fa9f-0449-5b57-a5c2-d3ea65f4040f" @@ -597,21 +620,9 @@ version = "1.5.0" [[Latexify]] deps = ["Formatting", "InteractiveUtils", "LaTeXStrings", "MacroTools", "Markdown", "Printf", "Requires"] -git-tree-sha1 = "537df0b32bc0a99620872cc6d06278e454da4533" +git-tree-sha1 = "fbc08b5a78e264ba3d19da90b36ce1789ca67a40" uuid = "23fbe1c1-3f47-55db-b15f-69d7ec21a316" -version = "0.14.10" - -[[LazyArtifacts]] -deps = ["Pkg"] -git-tree-sha1 = "4bb5499a1fc437342ea9ab7e319ede5a457c0968" -uuid = "4af54fe1-eca0-43a8-85a7-787d91b784e3" -version = "1.3.0" - -[[LeftChildRightSiblingTrees]] -deps = ["AbstractTrees"] -git-tree-sha1 = "71be1eb5ad19cb4f61fa8c73395c0338fd092ae0" -uuid = "1d6d02ad-be62-4b6b-8a6d-2f90e265016e" -version = "0.1.2" +version = "0.14.11" [[LibGit2]] deps = ["Printf"] @@ -626,6 +637,54 @@ version = "1.9.0+1" [[Libdl]] uuid = "8f399da3-3557-5675-b5ff-fb832c97cbdb" +[[Libffi_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] +git-tree-sha1 = "a2cd088a88c0d37eef7d209fd3d8712febce0d90" +uuid = "e9f186c6-92d2-5b65-8a66-fee21dc1b490" +version = "3.2.1+4" + +[[Libgcrypt_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Libgpg_error_jll", "Pkg"] +git-tree-sha1 = "b391a18ab1170a2e568f9fb8d83bc7c780cb9999" +uuid = "d4300ac3-e22c-5743-9152-c294e39db1e4" +version = "1.8.5+4" + +[[Libglvnd_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_libX11_jll", "Xorg_libXext_jll"] +git-tree-sha1 = "7739f837d6447403596a75d19ed01fd08d6f56bf" +uuid = "7e76a0d4-f3c7-5321-8279-8d96eeed0f29" +version = "1.3.0+3" + +[[Libgpg_error_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] +git-tree-sha1 = "ec7f2e8ad5c9fa99fc773376cdbc86d9a5a23cb7" +uuid = "7add5ba3-2f88-524e-9cd5-f83b8a55f7b8" +version = "1.36.0+3" + +[[Libiconv_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] +git-tree-sha1 = "8e924324b2e9275a51407a4e06deb3455b1e359f" +uuid = "94ce4f54-9a6c-5748-9c1c-f9c7231a4531" +version = "1.16.0+7" + +[[Libmount_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] +git-tree-sha1 = "51ad0c01c94c1ce48d5cad629425035ad030bfd5" +uuid = "4b2f31a3-9ecc-558c-b454-b3730dcb73e9" +version = "2.34.0+3" + +[[Libtiff_jll]] +deps = ["Artifacts", "JLLWrappers", "JpegTurbo_jll", "Libdl", "Pkg", "Zlib_jll", "Zstd_jll"] +git-tree-sha1 = "291dd857901f94d683973cdf679984cdf73b56d0" +uuid = "89763e89-9b03-5906-acba-b20f662cd828" +version = "4.1.0+2" + +[[Libuuid_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] +git-tree-sha1 = "f879ae9edbaa2c74c922e8b85bb83cc84ea1450b" +uuid = "38a345b3-de98-5d2b-a5d3-14cd9215e700" +version = "2.34.0+7" + [[LightGraphs]] deps = ["ArnoldiMethod", "DataStructures", "Distributed", "Inflate", "LinearAlgebra", "Random", "SharedArrays", "SimpleTraits", "SparseArrays", "Statistics"] git-tree-sha1 = "432428df5f360964040ed60418dd5601ecd240b6" @@ -645,12 +704,6 @@ uuid = "37e2e46d-f89d-539d-b4ee-838fcccc9c8e" [[Logging]] uuid = "56ddb016-857b-54e1-b83d-db4d58db5568" -[[LoggingExtras]] -deps = ["Dates"] -git-tree-sha1 = "95e675246b58a7cb1199a90cd50a25850ff215c7" -uuid = "e6f89c97-d47a-5376-807f-9c37f3926c36" -version = "0.4.5" - [[LoopVectorization]] deps = ["DocStringExtensions", "LinearAlgebra", "OffsetArrays", "SIMDPirates", "SLEEFPirates", "UnPack", "VectorizationBase"] git-tree-sha1 = "3242a8f411e19eda9adc49d0b877681975c11375" @@ -664,15 +717,10 @@ uuid = "d00139f3-1899-568f-a2f0-47f597d42d70" version = "5.1.0+5" [[MKL_jll]] -deps = ["Artifacts", "IntelOpenMP_jll", "JLLWrappers", "LazyArtifacts", "Libdl", "Pkg"] -git-tree-sha1 = "c253236b0ed414624b083e6b72bfe891fbd2c7af" +deps = ["IntelOpenMP_jll", "Libdl", "Pkg"] +git-tree-sha1 = "eb540ede3aabb8284cb482aa41d00d6ca850b1f8" uuid = "856f044c-d86e-5d09-b602-aeab76dc8ba7" -version = "2021.1.1+1" - -[[MLStyle]] -git-tree-sha1 = "937eda9ce36fcce082a42edd7181c8d23f4eb550" -uuid = "d8e11817-5142-5d16-987a-aa16d5891078" -version = "0.4.6" +version = "2020.2.254+0" [[MacroTools]] deps = ["Markdown", "Random"] @@ -711,10 +759,10 @@ version = "0.4.5" uuid = "a63ad114-7e13-5084-954f-fe012c677804" [[ModelingToolkit]] -deps = ["ArrayInterface", "DataStructures", "DiffEqBase", "DiffEqJump", "DiffRules", "Distributed", "DocStringExtensions", "GeneralizedGenerated", "IfElse", "LabelledArrays", "Latexify", "Libdl", "LightGraphs", "LinearAlgebra", "MacroTools", "NaNMath", "RecursiveArrayTools", "Requires", "SafeTestsets", "SparseArrays", "SpecialFunctions", "StaticArrays", "SymbolicUtils", "TreeViews", "UnPack", "Unitful"] -git-tree-sha1 = "a2777851fd21be36882ddafe5b5e2036cdc14636" +deps = ["ArrayInterface", "ConstructionBase", "DataStructures", "DiffEqBase", "DiffEqJump", "DiffRules", "Distributed", "Distributions", "DocStringExtensions", "IfElse", "LabelledArrays", "Latexify", "Libdl", "LightGraphs", "LinearAlgebra", "MacroTools", "NaNMath", "NonlinearSolve", "RecursiveArrayTools", "Reexport", "Requires", "RuntimeGeneratedFunctions", "SafeTestsets", "SciMLBase", "Serialization", "Setfield", "SparseArrays", "SpecialFunctions", "StaticArrays", "SymbolicUtils", "Symbolics", "TreeViews", "UnPack", "Unitful"] +git-tree-sha1 = "5354faf8d8799a5fdc5a72fba4817b64ade8b8c0" uuid = "961ee093-0014-501f-94e3-6117800e7a78" -version = "3.20.1" +version = "5.13.6" [[MuladdMacro]] git-tree-sha1 = "c6190f9a7fc5d9d5915ab29f2134421b12d24a68" @@ -735,9 +783,9 @@ version = "0.8.0" [[NLSolversBase]] deps = ["DiffResults", "Distributed", "FiniteDiff", "ForwardDiff"] -git-tree-sha1 = "39d6bc45e99c96e6995cbddac02877f9b61a1dd1" +git-tree-sha1 = "50608f411a1e178e0129eab4110bd56efd08816f" uuid = "d41bc354-129a-5804-8e4c-c37616107c6c" -version = "7.7.1" +version = "7.8.0" [[NLsolve]] deps = ["Distances", "LineSearches", "LinearAlgebra", "NLSolversBase", "Printf", "Reexport"] @@ -746,28 +794,28 @@ uuid = "2774e3e8-f4cf-5e23-947b-6d7e65073b56" version = "4.5.1" [[NNlib]] -deps = ["BinaryProvider", "Libdl", "LinearAlgebra", "Requires", "Statistics"] -git-tree-sha1 = "d9f196d911f55aeaff11b11f681b135980783824" +deps = ["ChainRulesCore", "Compat", "LinearAlgebra", "Pkg", "Requires", "Statistics"] +git-tree-sha1 = "ab1d43fead2ecb9aa5ae460d3d547c2cf8d89461" uuid = "872c559c-99b0-510c-b3b7-b6c96a88d5cd" -version = "0.6.6" +version = "0.7.17" [[NaNMath]] git-tree-sha1 = "bfe47e760d60b82b66b61d2d44128b62e3a369fb" uuid = "77ba4419-2d1f-58cd-9bb1-8ffee604a2e3" version = "0.3.5" -[[NameResolution]] -deps = ["PrettyPrint"] -git-tree-sha1 = "1a0fa0e9613f46c9b8c11eee38ebb4f590013c5e" -uuid = "71a1bf82-56d0-4bbc-8a3c-48b961074391" -version = "0.1.5" - [[NearestNeighbors]] deps = ["Distances", "StaticArrays"] git-tree-sha1 = "9afd724797039125e8e2cc362098f01dab60bc3a" uuid = "b8a86587-4115-5ab1-83bc-aa920d37bbce" version = "0.4.8" +[[NonlinearSolve]] +deps = ["ArrayInterface", "FiniteDiff", "ForwardDiff", "IterativeSolvers", "LinearAlgebra", "RecursiveArrayTools", "RecursiveFactorization", "Reexport", "SciMLBase", "Setfield", "StaticArrays", "UnPack"] +git-tree-sha1 = "ef18e47df4f3917af35be5e5d7f5d97e8a83b0ec" +uuid = "8913a72c-1f9b-4ce2-8d82-65094dcecaec" +version = "0.3.8" + [[Observables]] git-tree-sha1 = "3469ef96607a6b9a1e89e54e6f23401073ed3126" uuid = "510215fc-4207-5dde-b226-833fc4488ee2" @@ -805,9 +853,9 @@ version = "0.5.3+4" [[Optim]] deps = ["Compat", "FillArrays", "LineSearches", "LinearAlgebra", "NLSolversBase", "NaNMath", "Parameters", "PositiveFactorizations", "Printf", "SparseArrays", "StatsBase"] -git-tree-sha1 = "3286df38aba45acf7445f3acd87b7b57b7c7feb7" +git-tree-sha1 = "d34366a3abc25c41f88820762ef7dfdfe9306711" uuid = "429524aa-4258-5aef-a3af-852621145aeb" -version = "1.2.4" +version = "1.3.0" [[Opus_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] @@ -821,10 +869,16 @@ uuid = "bac558e1-5e72-5ebc-8fee-abe8a469f55d" version = "1.4.0" [[OrdinaryDiffEq]] -deps = ["Adapt", "ArrayInterface", "DataStructures", "DiffEqBase", "ExponentialUtilities", "FastClosures", "FiniteDiff", "ForwardDiff", "GenericSVD", "LinearAlgebra", "Logging", "MacroTools", "MuladdMacro", "NLsolve", "RecursiveArrayTools", "Reexport", "SparseArrays", "SparseDiffTools", "StaticArrays", "UnPack"] -git-tree-sha1 = "e6806009a3a5e74c5a6d44365c15b967daa7f798" +deps = ["Adapt", "ArrayInterface", "DataStructures", "DiffEqBase", "ExponentialUtilities", "FastClosures", "FiniteDiff", "ForwardDiff", "LinearAlgebra", "Logging", "MacroTools", "MuladdMacro", "NLsolve", "RecursiveArrayTools", "Reexport", "SparseArrays", "SparseDiffTools", "StaticArrays", "UnPack"] +git-tree-sha1 = "d22a75b8ae5b77543c4e1f8eae1ff01ce1f64453" uuid = "1dea7af3-3e70-54e6-95c3-0bf5283fa5ed" -version = "5.42.3" +version = "5.52.2" + +[[PCRE_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] +git-tree-sha1 = "1b556ad51dceefdbf30e86ffa8f528b73c7df2bb" +uuid = "2f80f16e-611a-54ab-bc61-aa92de5b98fc" +version = "8.42.0+4" [[PDMats]] deps = ["LinearAlgebra", "SparseArrays", "SuiteSparse", "Test"] @@ -833,10 +887,10 @@ uuid = "90014a1f-27ba-587c-ab20-58faa44d9150" version = "0.10.1" [[ParameterizedFunctions]] -deps = ["DataStructures", "DiffEqBase", "Latexify", "LinearAlgebra", "ModelingToolkit", "Reexport"] -git-tree-sha1 = "291279c720121d7f5c6a145726bb94da79e9b42c" +deps = ["DataStructures", "DiffEqBase", "Latexify", "LinearAlgebra", "ModelingToolkit", "Reexport", "SciMLBase"] +git-tree-sha1 = "3610913402be3856074668741326d82d02cbba5a" uuid = "65888b18-ceab-5e60-b2b9-181511a3b968" -version = "5.6.0" +version = "5.9.0" [[Parameters]] deps = ["OrderedCollections", "UnPack"] @@ -846,9 +900,15 @@ version = "0.12.2" [[Parsers]] deps = ["Dates"] -git-tree-sha1 = "223a825cccef2228f3fdbf2ecc7ca93363059073" +git-tree-sha1 = "c8abc88faa3f7a3950832ac5d6e690881590d6dc" uuid = "69de0a69-1ddd-5017-9359-2bf0b02dc9f0" -version = "1.0.16" +version = "1.1.0" + +[[Pixman_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] +git-tree-sha1 = "6a20a83c1ae86416f0a5de605eaea08a552844a3" +uuid = "30392449-352a-5448-841d-b1acce4e97dc" +version = "0.40.0+0" [[Pkg]] deps = ["Dates", "LibGit2", "Libdl", "Logging", "Markdown", "Printf", "REPL", "Random", "SHA", "UUIDs"] @@ -867,10 +927,10 @@ uuid = "995b91a9-d308-5afd-9ec6-746e21dbc043" version = "1.0.10" [[Plots]] -deps = ["Base64", "Contour", "Dates", "FFMPEG", "FixedPointNumbers", "GR", "GeometryBasics", "GeometryTypes", "JSON", "Latexify", "LinearAlgebra", "Measures", "NaNMath", "Pkg", "PlotThemes", "PlotUtils", "Printf", "REPL", "Random", "RecipesBase", "RecipesPipeline", "Reexport", "Requires", "Showoff", "SparseArrays", "Statistics", "StatsBase", "UUIDs"] -git-tree-sha1 = "f4425bbd5f313b074d6ce3b86d80c0ad16bf7326" +deps = ["Base64", "Contour", "Dates", "FFMPEG", "FixedPointNumbers", "GR", "GeometryBasics", "JSON", "Latexify", "LinearAlgebra", "Measures", "NaNMath", "PlotThemes", "PlotUtils", "Printf", "REPL", "Random", "RecipesBase", "RecipesPipeline", "Reexport", "Requires", "Scratch", "Showoff", "SparseArrays", "Statistics", "StatsBase", "UUIDs"] +git-tree-sha1 = "40031283dbb5ae602aa132f423daedfc18c82069" uuid = "91a5bcdd-55d7-5caf-9e0b-520d859cae80" -version = "1.6.12" +version = "1.11.0" [[PoissonRandom]] deps = ["Random", "Statistics", "Test"] @@ -890,11 +950,6 @@ git-tree-sha1 = "17275485f373e6673f7e7f97051f703ed5b15b20" uuid = "85a6dd25-e78a-55b7-8502-1745935b8125" version = "0.2.4" -[[PrettyPrint]] -git-tree-sha1 = "632eb4abab3449ab30c5e1afaa874f0b98b586e4" -uuid = "8162dcfd-2161-5ef2-ae6c-7681170c5f98" -version = "0.2.0" - [[PrettyTables]] deps = ["Crayons", "Formatting", "Markdown", "Reexport", "Tables"] git-tree-sha1 = "574a6b3ea95f04e8757c0280bb9c29f1a5e35138" @@ -905,12 +960,6 @@ version = "0.11.1" deps = ["Unicode"] uuid = "de0858da-6303-5e67-8744-51eddeeeb8d7" -[[ProgressLogging]] -deps = ["Logging", "SHA", "UUIDs"] -git-tree-sha1 = "80d919dee55b9c50e8d9e2da5eeafff3fe58b539" -uuid = "33c8b6b6-d38a-422a-b730-caa89a2f386c" -version = "0.1.4" - [[ProgressMeter]] deps = ["Distributed", "Printf"] git-tree-sha1 = "6e9c89cba09f6ef134b00e10625590746ba1e036" @@ -923,6 +972,12 @@ git-tree-sha1 = "dd1a970b543bd02efce2984582e996af28cab27f" uuid = "438e738f-606a-5dbb-bf0a-cddfbfd45ab0" version = "1.92.2" +[[Qt_jll]] +deps = ["Artifacts", "CompilerSupportLibraries_jll", "Fontconfig_jll", "Glib_jll", "JLLWrappers", "Libdl", "Libglvnd_jll", "OpenSSL_jll", "Pkg", "Xorg_libXext_jll", "Xorg_libxcb_jll", "Xorg_xcb_util_image_jll", "Xorg_xcb_util_keysyms_jll", "Xorg_xcb_util_renderutil_jll", "Xorg_xcb_util_wm_jll", "Zlib_jll", "xkbcommon_jll"] +git-tree-sha1 = "588b799506f0b956a7e6e18f767dfa03cf333f26" +uuid = "ede63266-ebff-546c-83e0-1c6fb6d0efc8" +version = "5.15.2+2" + [[QuadGK]] deps = ["DataStructures", "LinearAlgebra"] git-tree-sha1 = "12fbe86da16df6679be7521dfb39fbc861e1dc7b" @@ -967,9 +1022,9 @@ version = "1.1.1" [[RecipesPipeline]] deps = ["Dates", "NaNMath", "PlotUtils", "RecipesBase"] -git-tree-sha1 = "4a325c9bcc2d8e62a8f975b9666d0251d53b63b9" +git-tree-sha1 = "c4d54a78e287de7ec73bbc928ce5eb3c60f80b24" uuid = "01d81517-befc-4cb6-b9ec-a95719d0359c" -version = "0.1.13" +version = "0.3.1" [[RecursiveArrayTools]] deps = ["ArrayInterface", "LinearAlgebra", "RecipesBase", "Requires", "StaticArrays", "Statistics", "ZygoteRules"] @@ -984,10 +1039,9 @@ uuid = "f2c3362d-daeb-58d1-803e-2bc74f2840b4" version = "0.1.8" [[Reexport]] -deps = ["Pkg"] -git-tree-sha1 = "7b1d07f411bc8ddb7977ec7f377b97b158514fe0" +git-tree-sha1 = "57d8440b0c7d98fc4f889e478e80f268d534c9d5" uuid = "189a3867-3050-52da-a836-e630ba90ab69" -version = "0.2.0" +version = "1.0.0" [[Requires]] deps = ["UUIDs"] @@ -1008,16 +1062,16 @@ uuid = "79098fc4-a85e-5d69-aa6a-4863f24498fa" version = "0.6.1" [[Rmath_jll]] -deps = ["Libdl", "Pkg"] -git-tree-sha1 = "d76185aa1f421306dec73c057aa384bad74188f0" +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] +git-tree-sha1 = "1b7bf41258f6c5c9c31df8c1ba34c1fc88674957" uuid = "f50d1b31-88e8-58de-be2c-1cc44531875f" -version = "0.2.2+1" +version = "0.2.2+2" -[[Roots]] -deps = ["Printf"] -git-tree-sha1 = "369e25546984dff5df351bc056fccc30de615080" -uuid = "f2b01f46-fcfa-551c-844a-d8ac1e96c665" -version = "1.0.8" +[[RuntimeGeneratedFunctions]] +deps = ["ExprTools", "SHA", "Serialization"] +git-tree-sha1 = "e02f14dfe3a8d3b8fc92ca80c1882bfdbc015e07" +uuid = "7e49a35a-f44a-4d26-94aa-eba1b4ca6b47" +version = "0.5.1" [[SHA]] uuid = "ea8e919c-243c-51af-8825-aaa63cd721ce" @@ -1042,9 +1096,9 @@ version = "0.0.1" [[SciMLBase]] deps = ["ArrayInterface", "CommonSolve", "Distributed", "DocStringExtensions", "IteratorInterfaceExtensions", "LinearAlgebra", "Logging", "RecipesBase", "RecursiveArrayTools", "StaticArrays", "Statistics", "Tables", "TreeViews"] -git-tree-sha1 = "ad3dfcfb426011e894caa6dd38d2dc1ff6afc1ac" +git-tree-sha1 = "9dd06ee4a1238265ddf512851682cb3db326a8a8" uuid = "0bca4576-84f4-4d90-8ffe-ffa030f20462" -version = "1.8.2" +version = "1.8.5" [[ScikitLearn]] deps = ["Compat", "Conda", "DataFrames", "Distributed", "IterTools", "LinearAlgebra", "MacroTools", "Parameters", "Printf", "PyCall", "Random", "ScikitLearnBase", "SparseArrays", "StatsBase", "VersionParsing"] @@ -1058,6 +1112,12 @@ git-tree-sha1 = "7877e55c1523a4b336b433da39c8e8c08d2f221f" uuid = "6e75b9c4-186b-50bd-896f-2d2496a4843e" version = "0.5.0" +[[Scratch]] +deps = ["Dates"] +git-tree-sha1 = "ad4b278adb62d185bbcb6864dc24959ab0627bf6" +uuid = "6c6a2e73-6563-6170-7368-637461726353" +version = "1.0.3" + [[SentinelArrays]] deps = ["Dates", "Random"] git-tree-sha1 = "6ccde405cf0759eba835eb613130723cb8f10ff9" @@ -1067,6 +1127,12 @@ version = "1.2.16" [[Serialization]] uuid = "9e88b42a-f829-5b0c-bbe9-9e923198166b" +[[Setfield]] +deps = ["ConstructionBase", "Future", "MacroTools", "Requires"] +git-tree-sha1 = "d5640fc570fb1b6c54512f0bd3853866bd298b3e" +uuid = "efcf1570-3423-57d1-acb7-fd33fddbac46" +version = "0.7.0" + [[SharedArrays]] deps = ["Distributed", "Mmap", "Random", "Serialization"] uuid = "1a1011a3-84de-559e-8e89-a11a2f7dc383" @@ -1098,21 +1164,21 @@ uuid = "2f01184e-e22b-5df5-ae63-d93ebab69eaf" [[SparseDiffTools]] deps = ["Adapt", "ArrayInterface", "Compat", "DataStructures", "FiniteDiff", "ForwardDiff", "LightGraphs", "LinearAlgebra", "Requires", "SparseArrays", "VertexSafeGraphs"] -git-tree-sha1 = "93666e93899d995ec37abddde4811f533e49c074" +git-tree-sha1 = "d05bc362e3fa1b0e2361594a706fc63ffbd140f3" uuid = "47a9eef4-7e08-11e9-0b38-333d64bd3804" -version = "1.9.1" +version = "1.13.0" [[SpecialFunctions]] -deps = ["OpenSpecFun_jll"] -git-tree-sha1 = "d8d8b8a9f4119829410ecd706da4cc8594a1e020" +deps = ["ChainRulesCore", "OpenSpecFun_jll"] +git-tree-sha1 = "5919936c0e92cff40e57d0ddf0ceb667d42e5902" uuid = "276daf66-3868-5448-9aa4-cd146d93841b" -version = "0.10.3" +version = "1.3.0" [[StaticArrays]] deps = ["LinearAlgebra", "Random", "Statistics"] -git-tree-sha1 = "da4cf579416c81994afd6322365d00916c79b8ae" +git-tree-sha1 = "9da72ed50e94dbff92036da395275ed114e04d49" uuid = "90137ffa-7385-5640-81b9-e52037218182" -version = "0.12.5" +version = "1.0.1" [[Statistics]] deps = ["LinearAlgebra", "SparseArrays"] @@ -1120,9 +1186,9 @@ uuid = "10745b16-79ce-11e8-11f9-7d13ad32a3b2" [[StatsBase]] deps = ["DataAPI", "DataStructures", "LinearAlgebra", "Missings", "Printf", "Random", "SortingAlgorithms", "SparseArrays", "Statistics"] -git-tree-sha1 = "7bab7d4eb46b225b35179632852b595a3162cb61" +git-tree-sha1 = "a83fa3021ac4c5a918582ec4721bc0cf70b495a9" uuid = "2913bbd2-ae8a-5f71-8c99-4fb6c76f3a91" -version = "0.33.2" +version = "0.33.4" [[StatsFuns]] deps = ["Rmath", "SpecialFunctions"] @@ -1144,9 +1210,9 @@ version = "1.6.1" [[StochasticDiffEq]] deps = ["ArrayInterface", "DataStructures", "DiffEqBase", "DiffEqJump", "DiffEqNoiseProcess", "FillArrays", "FiniteDiff", "ForwardDiff", "LinearAlgebra", "Logging", "MuladdMacro", "NLsolve", "OrdinaryDiffEq", "Random", "RandomNumbers", "RecursiveArrayTools", "Reexport", "SparseArrays", "SparseDiffTools", "StaticArrays", "UnPack"] -git-tree-sha1 = "ea25d14313775646f9aa4b2158156fb1b3815001" +git-tree-sha1 = "3109ce733c907b941eea4345b0644308e2c6da2d" uuid = "789caeaf-c7a9-5a7d-9973-96adeb23e2a0" -version = "6.25.0" +version = "6.33.1" [[StructArrays]] deps = ["Adapt", "DataAPI", "Tables"] @@ -1156,9 +1222,9 @@ version = "0.5.0" [[StructTypes]] deps = ["Dates", "UUIDs"] -git-tree-sha1 = "d7f4287dbc1e590265f50ceda1b40ed2bb31bbbb" +git-tree-sha1 = "89b390141d2fb2ef3ac2dc32e336f7a5c4810751" uuid = "856f2bd8-1eba-4b0a-8007-ebc267875bd4" -version = "1.4.0" +version = "1.5.0" [[SuiteSparse]] deps = ["Libdl", "LinearAlgebra", "Serialization", "SparseArrays"] @@ -1172,9 +1238,9 @@ version = "5.4.0+9" [[Sundials]] deps = ["CEnum", "DataStructures", "DiffEqBase", "Libdl", "LinearAlgebra", "Logging", "Reexport", "SparseArrays", "Sundials_jll"] -git-tree-sha1 = "0fc68b00d45b3882174d21a5841a1049769b9fd8" +git-tree-sha1 = "28db9e1a8fdd1b8e95cee064a6c2066897cf39c5" uuid = "c3572dad-4567-51f8-b174-8c6c989267f4" -version = "4.2.6" +version = "4.4.1" [[Sundials_jll]] deps = ["CompilerSupportLibraries_jll", "Libdl", "OpenBLAS_jll", "Pkg", "SuiteSparse_jll"] @@ -1183,10 +1249,16 @@ uuid = "fb77eaff-e24c-56d4-86b1-d163f2edb164" version = "5.2.0+1" [[SymbolicUtils]] -deps = ["AbstractAlgebra", "Combinatorics", "DataStructures", "NaNMath", "SpecialFunctions", "TimerOutputs"] -git-tree-sha1 = "cd230ab5f02844155415aad28e8474fe459fe366" +deps = ["AbstractAlgebra", "AbstractTrees", "Combinatorics", "ConstructionBase", "DataStructures", "IfElse", "LabelledArrays", "NaNMath", "Setfield", "SparseArrays", "SpecialFunctions", "StaticArrays", "TimerOutputs"] +git-tree-sha1 = "5b4e14c896c9cab17807388fd2a280780ac5f258" uuid = "d1185830-fcd6-423d-90d6-eec64667417b" -version = "0.5.2" +version = "0.9.2" + +[[Symbolics]] +deps = ["AbstractAlgebra", "DiffRules", "Distributions", "DocStringExtensions", "IfElse", "Latexify", "Libdl", "LinearAlgebra", "MacroTools", "NaNMath", "RecipesBase", "Reexport", "RuntimeGeneratedFunctions", "SciMLBase", "Setfield", "SparseArrays", "SpecialFunctions", "SymbolicUtils", "TreeViews"] +git-tree-sha1 = "b21d35c61b10de6c07753792ee721e527cba4109" +uuid = "0c5d862f-8b57-4792-8d23-62f2024744c7" +version = "0.1.10" [[TableOperations]] deps = ["SentinelArrays", "Tables", "Test"] @@ -1202,15 +1274,9 @@ version = "1.0.0" [[Tables]] deps = ["DataAPI", "DataValueInterfaces", "IteratorInterfaceExtensions", "LinearAlgebra", "TableTraits", "Test"] -git-tree-sha1 = "f03fc113290ee7726b173fc7ea661260d204b3f2" +git-tree-sha1 = "a9ff3dfec713c6677af435d6a6d65f9744feef67" uuid = "bd369af6-aec1-5ad0-b16a-f7cc5008161c" -version = "1.4.0" - -[[TerminalLoggers]] -deps = ["LeftChildRightSiblingTrees", "Logging", "Markdown", "Printf", "ProgressLogging", "UUIDs"] -git-tree-sha1 = "e185a19bb9172f0cf5bc71233fab92a46f7ae154" -uuid = "5d786b92-1e48-4d6f-9151-6b4477ca9bed" -version = "0.1.3" +version = "1.4.1" [[Test]] deps = ["Distributed", "InteractiveUtils", "Logging", "Random"] @@ -1269,6 +1335,18 @@ git-tree-sha1 = "b9b450c99a3ca1cc1c6836f560d8d887bcbe356e" uuid = "19fa3120-7c27-5ec5-8db8-b0b0aa330d6f" version = "0.1.2" +[[Wayland_jll]] +deps = ["Artifacts", "Expat_jll", "JLLWrappers", "Libdl", "Libffi_jll", "Pkg", "XML2_jll"] +git-tree-sha1 = "dc643a9b774da1c2781413fd7b6dcd2c56bb8056" +uuid = "a2964d1f-97da-50d4-b82a-358c7fce9d89" +version = "1.17.0+4" + +[[Wayland_protocols_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Wayland_jll"] +git-tree-sha1 = "2839f1c1296940218e35df0bbb220f2a79686670" +uuid = "2381bf8a-dfd0-557d-9999-79630e7b1b91" +version = "1.18.0+4" + [[Widgets]] deps = ["Colors", "Dates", "Observables", "OrderedCollections"] git-tree-sha1 = "fc0feda91b3fef7fe6948ee09bb628f882b49ca4" @@ -1281,17 +1359,161 @@ git-tree-sha1 = "59e2ad8fd1591ea019a5259bd012d7aee15f995c" uuid = "efce3f68-66dc-5838-9240-27a6d6f5f9b6" version = "0.5.3" +[[XML2_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Libiconv_jll", "Pkg", "Zlib_jll"] +git-tree-sha1 = "be0db24f70aae7e2b89f2f3092e93b8606d659a6" +uuid = "02c8fc9c-b97f-50b9-bbe4-9be30ff0a78a" +version = "2.9.10+3" + +[[XSLT_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Libgcrypt_jll", "Pkg", "XML2_jll"] +git-tree-sha1 = "2b3eac39df218762d2d005702d601cd44c997497" +uuid = "aed1982a-8fda-507f-9586-7b0439959a61" +version = "1.1.33+4" + +[[Xorg_libX11_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_libxcb_jll", "Xorg_xtrans_jll"] +git-tree-sha1 = "5be649d550f3f4b95308bf0183b82e2582876527" +uuid = "4f6342f7-b3d2-589e-9d20-edeb45f2b2bc" +version = "1.6.9+4" + +[[Xorg_libXau_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] +git-tree-sha1 = "4e490d5c960c314f33885790ed410ff3a94ce67e" +uuid = "0c0b7dd1-d40b-584c-a123-a41640f87eec" +version = "1.0.9+4" + +[[Xorg_libXcursor_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_libXfixes_jll", "Xorg_libXrender_jll"] +git-tree-sha1 = "12e0eb3bc634fa2080c1c37fccf56f7c22989afd" +uuid = "935fb764-8cf2-53bf-bb30-45bb1f8bf724" +version = "1.2.0+4" + +[[Xorg_libXdmcp_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] +git-tree-sha1 = "4fe47bd2247248125c428978740e18a681372dd4" +uuid = "a3789734-cfe1-5b06-b2d0-1dd0d9d62d05" +version = "1.1.3+4" + +[[Xorg_libXext_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_libX11_jll"] +git-tree-sha1 = "b7c0aa8c376b31e4852b360222848637f481f8c3" +uuid = "1082639a-0dae-5f34-9b06-72781eeb8cb3" +version = "1.3.4+4" + +[[Xorg_libXfixes_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_libX11_jll"] +git-tree-sha1 = "0e0dc7431e7a0587559f9294aeec269471c991a4" +uuid = "d091e8ba-531a-589c-9de9-94069b037ed8" +version = "5.0.3+4" + +[[Xorg_libXi_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_libXext_jll", "Xorg_libXfixes_jll"] +git-tree-sha1 = "89b52bc2160aadc84d707093930ef0bffa641246" +uuid = "a51aa0fd-4e3c-5386-b890-e753decda492" +version = "1.7.10+4" + +[[Xorg_libXinerama_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_libXext_jll"] +git-tree-sha1 = "26be8b1c342929259317d8b9f7b53bf2bb73b123" +uuid = "d1454406-59df-5ea1-beac-c340f2130bc3" +version = "1.1.4+4" + +[[Xorg_libXrandr_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_libXext_jll", "Xorg_libXrender_jll"] +git-tree-sha1 = "34cea83cb726fb58f325887bf0612c6b3fb17631" +uuid = "ec84b674-ba8e-5d96-8ba1-2a689ba10484" +version = "1.5.2+4" + +[[Xorg_libXrender_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_libX11_jll"] +git-tree-sha1 = "19560f30fd49f4d4efbe7002a1037f8c43d43b96" +uuid = "ea2f1a96-1ddc-540d-b46f-429655e07cfa" +version = "0.9.10+4" + +[[Xorg_libpthread_stubs_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] +git-tree-sha1 = "6783737e45d3c59a4a4c4091f5f88cdcf0908cbb" +uuid = "14d82f49-176c-5ed1-bb49-ad3f5cbd8c74" +version = "0.1.0+3" + +[[Xorg_libxcb_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "XSLT_jll", "Xorg_libXau_jll", "Xorg_libXdmcp_jll", "Xorg_libpthread_stubs_jll"] +git-tree-sha1 = "daf17f441228e7a3833846cd048892861cff16d6" +uuid = "c7cfdc94-dc32-55de-ac96-5a1b8d977c5b" +version = "1.13.0+3" + +[[Xorg_libxkbfile_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_libX11_jll"] +git-tree-sha1 = "926af861744212db0eb001d9e40b5d16292080b2" +uuid = "cc61e674-0454-545c-8b26-ed2c68acab7a" +version = "1.1.0+4" + +[[Xorg_xcb_util_image_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_xcb_util_jll"] +git-tree-sha1 = "0fab0a40349ba1cba2c1da699243396ff8e94b97" +uuid = "12413925-8142-5f55-bb0e-6d7ca50bb09b" +version = "0.4.0+1" + +[[Xorg_xcb_util_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_libxcb_jll"] +git-tree-sha1 = "e7fd7b2881fa2eaa72717420894d3938177862d1" +uuid = "2def613f-5ad1-5310-b15b-b15d46f528f5" +version = "0.4.0+1" + +[[Xorg_xcb_util_keysyms_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_xcb_util_jll"] +git-tree-sha1 = "d1151e2c45a544f32441a567d1690e701ec89b00" +uuid = "975044d2-76e6-5fbe-bf08-97ce7c6574c7" +version = "0.4.0+1" + +[[Xorg_xcb_util_renderutil_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_xcb_util_jll"] +git-tree-sha1 = "dfd7a8f38d4613b6a575253b3174dd991ca6183e" +uuid = "0d47668e-0667-5a69-a72c-f761630bfb7e" +version = "0.3.9+1" + +[[Xorg_xcb_util_wm_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_xcb_util_jll"] +git-tree-sha1 = "e78d10aab01a4a154142c5006ed44fd9e8e31b67" +uuid = "c22f9ab0-d5fe-5066-847c-f4bb1cd4e361" +version = "0.4.1+1" + +[[Xorg_xkbcomp_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_libxkbfile_jll"] +git-tree-sha1 = "4bcbf660f6c2e714f87e960a171b119d06ee163b" +uuid = "35661453-b289-5fab-8a00-3d9160c6a3a4" +version = "1.4.2+4" + +[[Xorg_xkeyboard_config_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_xkbcomp_jll"] +git-tree-sha1 = "5c8424f8a67c3f2209646d4425f3d415fee5931d" +uuid = "33bec58e-1273-512f-9401-5d533626f822" +version = "2.27.0+4" + +[[Xorg_xtrans_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] +git-tree-sha1 = "79c31e7844f6ecf779705fbc12146eb190b7d845" +uuid = "c5fb5394-a638-5e4d-96e5-b29de1b5cf10" +version = "1.4.0+3" + [[Zlib_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] git-tree-sha1 = "320228915c8debb12cb434c59057290f0834dbf6" uuid = "83775a58-1f1d-513f-b197-d71354ab007a" version = "1.2.11+18" +[[Zstd_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] +git-tree-sha1 = "2c1332c54931e83f8f94d310fa447fd743e8d600" +uuid = "3161d3a3-bdf6-5164-811a-617609db77b4" +version = "1.4.8+0" + [[Zygote]] -deps = ["DiffRules", "FFTW", "FillArrays", "ForwardDiff", "IRTools", "InteractiveUtils", "LinearAlgebra", "MacroTools", "NNlib", "NaNMath", "Random", "Requires", "SpecialFunctions", "Statistics", "ZygoteRules"] -git-tree-sha1 = "f8329b595c465caf3ca87c4f744e6041a4983e43" +deps = ["AbstractFFTs", "ArrayLayouts", "ChainRules", "DiffRules", "Distributed", "FillArrays", "ForwardDiff", "IRTools", "InteractiveUtils", "LinearAlgebra", "LoopVectorization", "MacroTools", "NNlib", "NaNMath", "Random", "Requires", "SpecialFunctions", "Statistics", "ZygoteRules"] +git-tree-sha1 = "18f758f28ca2c236e449be64e366e201965129a7" uuid = "e88e6eb3-aa80-5325-afca-941959d7151f" -version = "0.4.8" +version = "0.5.17" [[ZygoteRules]] deps = ["MacroTools"] @@ -1311,6 +1533,12 @@ git-tree-sha1 = "7a5780a0d9c6864184b3a2eeeb833a0c871f00ab" uuid = "f638f0a6-7fb0-5443-88ba-1cc74229b280" version = "0.1.6+4" +[[libpng_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Zlib_jll"] +git-tree-sha1 = "6abbc424248097d69c0c87ba50fcb0753f93e0ee" +uuid = "b53b4c65-9356-5827-b1ea-8c7a1a84506f" +version = "1.6.37+6" + [[libvorbis_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Ogg_jll", "Pkg"] git-tree-sha1 = "fa14ac25af7a4b8a7f61b287a124df7aab601bcd" @@ -1328,3 +1556,9 @@ deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] git-tree-sha1 = "487da2f8f2f0c8ee0e83f39d13037d6bbf0a45ab" uuid = "dfaa095f-4041-5dcd-9319-2fabd8486b76" version = "3.0.0+3" + +[[xkbcommon_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Wayland_jll", "Wayland_protocols_jll", "Xorg_libxcb_jll", "Xorg_xkeyboard_config_jll"] +git-tree-sha1 = "ece2350174195bb31de1a63bea3a41ae1aa593b6" +uuid = "d8fb68d0-12a3-5cfd-a85a-d49703b185fd" +version = "0.9.1+5" diff --git a/examples/Lorenz/Project.toml b/examples/Lorenz/Project.toml index e4fad32d5..c3b779a9b 100644 --- a/examples/Lorenz/Project.toml +++ b/examples/Lorenz/Project.toml @@ -11,3 +11,6 @@ PyCall = "438e738f-606a-5dbb-bf0a-cddfbfd45ab0" ScikitLearn = "3646fa90-6ef7-5e7e-9f22-8aca16db6324" StatsBase = "2913bbd2-ae8a-5f71-8c99-4fb6c76f3a91" StatsPlots = "f3b207a7-027a-5e70-b257-86293d7955fd" + +[compat] +FFTW = "= 1.3.0"