Support for (Tree)SummarizedExperiment?

[antagomir]

(Tree)SummarizedExperiment (Huang et al. 2021) is becoming increasingly common in microbiome data science in R/Bioconductor. Would it be possible to add support for this, like treese2meco or se2meco function?

[ChiLiubio]

Thanks for the suggestion! We will have a try.

Best,
Chi

[antagomir]

Keep us posted, we would have use for it!

[ChiLiubio]

Hi. I have added tse2meco and meco2tse function in github. If you need them, you can reinstall the package from github and have a try. Please feel free to tell me if the function donot work well.

[antagomir]

Thanks, we will test!

[antagomir]

Ok seems good. I have opened an issue elsewhere and we will consider how to incorporate more tightly with TreeSE microbiome resources.

[ChiLiubio]

Great! I will pay attention to it.