We will use ImageJ, and in particular FIJI to illustrate the most basic concepts of bio-image Analysis
If you want to follow the training material please download and install FIJI following the instructions provided on their website.
Direct link to the presentation
Link to the folder containing also the data
Here the link for the recording of the live demo:
ImageJ/FIJI: https://imagej.net/Learn
NEUBIAS: http://eubias.org/NEUBIAS/
Image.sc Forum https://forum.image.sc/
Bio-Image analysis wiki http://wiki.cmci.info/start
Bioimage Data Analysis, Editor: Kota Miura
https://analyticalscience.wiley.com/do/10.1002/was.00050003
Bioimage Data Analysis Workflows, Editors: Kota Miura and Nataša Sladoje
https://www.springer.com/gp/book/9783030223854
- Images are numbers
- LUTs, and multidimensional data
- Pre-processing
- Image filters
- Segmentation
- Post processing: morphological operations
- Quantification
- Analyze particles, ROI manager