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This package defines an instance of the AbstractFBCModel interface (from the
package AbstractFBCModels.jl)
for models saved as JSON files (typically produced by
cobrapy). This allows you to easily use
the JSON formatted models in constraint-based modeling packages, and convert
them to other constraint-based metabolic modeling data formats.
The primary purpose of this is to provide JSON loading functionality for COBREXA.jl and FBCModelTests.jl, but is otherwise completely generic and can be used independently of these packages.
You should be able to load JSON models (of type JSONFBCModel) via the
AbstractFBCModels interface:
import AbstractFBCModels as M
import JSONFBCModels
model = M.load("my_model.json")Documentation of AbstractFBCModels.jl provides details on the use of the loaded model.
JSONFBCModels.jl was developed at the Luxembourg Centre for Systems
Biomedicine of the University of Luxembourg
(uni.lu/lcsb)
and at Institute for Quantitative and Theoretical Biology at Heinrich Heine
University Düsseldorf (qtb.hhu.de).
The development was supported by European Union's Horizon 2020 Programme under
PerMedCoE project (permedcoe.eu),
agreement no. 951773.
