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Hi, #197

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HAJRA-sys opened this issue Nov 2, 2024 · 0 comments
Open

Hi, #197

HAJRA-sys opened this issue Nov 2, 2024 · 0 comments

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@HAJRA-sys
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HAJRA-sys commented Nov 2, 2024

Hi, I have downloaded CAMI-toy high data from CAMI GigaDB. It has 5 samples and for each one i see an abundance.tsv and a mapping.tsv file. The abundance file has the following structure 1284811.1 NZ_APVP01000009.1 1284811.1.fna 0.149746999094 223662 c
1284811.1 NZ_APVP01000113.1 1284811.1.fna 0.149746999094 185413 c
1284811.1 NZ_APVP01000208.1 1284811.1.fna 0.149746999094 174071 c. Please provide me with the header of the file? What exactly is in fourth and fifth column? is it taxon abundance and number of mapped reads? I am particularly concerned about fourth column, because its values goes to 0 and beyond 100 for some instances.

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