diff --git a/README.md b/README.md index 37762a9..342aa51 100755 --- a/README.md +++ b/README.md @@ -32,7 +32,7 @@ Documentation: https://imctools.readthedocs.io Preferable way to install `imctools` is via official PyPI registry. Please define package version explicitly in order to avoid incompatibilities between v1.x and v2.x versions: ``` -pip install imctools==1.0.7 +pip install imctools==1.0.8 ``` ## Usage diff --git a/poetry.lock b/poetry.lock index 7f51a1e..cb64872 100644 --- a/poetry.lock +++ b/poetry.lock @@ -12,7 +12,7 @@ description = "Atomic file writes." name = "atomicwrites" optional = false python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*" -version = "1.3.0" +version = "1.4.0" [[package]] category = "dev" @@ -22,6 +22,12 @@ optional = false python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*" version = "19.3.0" +[package.extras] +azure-pipelines = ["coverage", "hypothesis", "pympler", "pytest (>=4.3.0)", "six", "zope.interface", "pytest-azurepipelines"] +dev = ["coverage", "hypothesis", "pympler", "pytest (>=4.3.0)", "six", "zope.interface", "sphinx", "pre-commit"] +docs = ["sphinx", "zope.interface"] +tests = ["coverage", "hypothesis", "pympler", "pytest (>=4.3.0)", "six", "zope.interface"] + [[package]] category = "dev" description = "Removes unused imports and unused variables" @@ -39,7 +45,7 @@ description = "Internationalization utilities" name = "babel" optional = false python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*" -version = "2.7.0" +version = "2.8.0" [package.dependencies] pytz = ">=2015.7" @@ -53,13 +59,17 @@ optional = false python-versions = ">=2.6" version = "1.6.1" +[package.extras] +docs = ["sphinx", "jaraco.packaging (>=3.2)", "rst.linker (>=1.9)"] +testing = ["pytest (>=3.5,<3.7.3 || >3.7.3)", "pytest-checkdocs (>=1.2.3)", "pytest-flake8", "pytest-black-multipy", "pytest-cov"] + [[package]] category = "dev" description = "Python package for providing Mozilla's CA Bundle." name = "certifi" optional = false python-versions = "*" -version = "2019.9.11" +version = "2020.6.20" [[package]] category = "dev" @@ -75,17 +85,26 @@ description = "Extended pickling support for Python objects" name = "cloudpickle" optional = false python-versions = "*" -version = "1.2.2" +version = "1.3.0" [[package]] category = "dev" description = "Cross-platform colored terminal text." -marker = "sys_platform == \"win32\"" +marker = "sys_platform == \"win32\" and python_version == \"3.4\" or sys_platform == \"win32\"" name = "colorama" optional = false python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*" version = "0.4.1" +[[package]] +category = "dev" +description = "Cross-platform colored terminal text." +marker = "sys_platform == \"win32\" and python_version != \"3.4\" or sys_platform == \"win32\"" +name = "colorama" +optional = false +python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*" +version = "0.4.3" + [[package]] category = "dev" description = "Updated configparser from Python 3.7 for Python 2.6+." @@ -95,10 +114,14 @@ optional = false python-versions = ">=2.6" version = "4.0.2" +[package.extras] +docs = ["sphinx", "jaraco.packaging (>=3.2)", "rst.linker (>=1.9)"] +testing = ["pytest (>=3.5,<3.7.3 || >3.7.3)", "pytest-checkdocs (>=1.2)", "pytest-flake8", "pytest-black-multipy"] + [[package]] category = "dev" description = "Backports and enhancements for the contextlib module" -marker = "python_version < \"3\"" +marker = "python_version < \"3.4\"" name = "contextlib2" optional = false python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*" @@ -121,7 +144,7 @@ description = "Decorators for Humans" name = "decorator" optional = false python-versions = ">=2.6, !=3.0.*, !=3.1.*" -version = "4.4.1" +version = "4.4.2" [[package]] category = "dev" @@ -133,16 +156,11 @@ version = "0.15.2" [[package]] category = "dev" -description = "Discover and load entry points from installed packages." -name = "entrypoints" +description = "Docutils -- Python Documentation Utilities" +name = "docutils" optional = false -python-versions = ">=2.7" -version = "0.3" - -[package.dependencies] -[package.dependencies.configparser] -python = ">=2.7,<2.8" -version = ">=3.5" +python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*" +version = "0.16" [[package]] category = "main" @@ -151,21 +169,20 @@ marker = "python_version < \"3.4\"" name = "enum34" optional = false python-versions = "*" -version = "1.1.6" +version = "1.1.10" [[package]] category = "dev" -description = "the modular source code checker: pep8, pyflakes and co" +description = "the modular source code checker: pep8 pyflakes and co" name = "flake8" optional = false -python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*" -version = "3.7.9" +python-versions = "!=3.0.*,!=3.1.*,!=3.2.*,!=3.3.*,>=2.7" +version = "3.8.3" [package.dependencies] -entrypoints = ">=0.3.0,<0.4.0" mccabe = ">=0.6.0,<0.7.0" -pycodestyle = ">=2.5.0,<2.6.0" -pyflakes = ">=2.1.0,<2.2.0" +pycodestyle = ">=2.6.0a1,<2.7.0" +pyflakes = ">=2.2.0,<2.3.0" [package.dependencies.configparser] python = "<3.2" @@ -179,6 +196,10 @@ version = "*" python = "<3.2" version = "*" +[package.dependencies.importlib-metadata] +python = "<3.8" +version = "*" + [package.dependencies.typing] python = "<3.5" version = "*" @@ -218,6 +239,14 @@ optional = false python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*" version = "2.8" +[[package]] +category = "dev" +description = "Internationalized Domain Names in Applications (IDNA)" +name = "idna" +optional = false +python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*" +version = "2.10" + [[package]] category = "main" description = "Image transformation, compression, and decompression codecs" @@ -225,10 +254,36 @@ marker = "platform_system == \"Windows\"" name = "imagecodecs" optional = false python-versions = ">=2.7" -version = "2019.11.18" +version = "2019.12.31" + +[package.dependencies] +numpy = ">=1.14.5" + +[package.dependencies.pathlib] +python = ">=2.7,<2.8" +version = "*" + +[package.extras] +all = ["matplotlib (>=2.2)", "tifffile (>=2019.7.2)"] + +[[package]] +category = "main" +description = "Library for reading and writing a wide range of image, video, scientific, and volumetric data formats." +name = "imageio" +optional = false +python-versions = ">=3.5" +version = "2.9.0" [package.dependencies] -numpy = ">=1.14.6" +numpy = "*" +pillow = "*" + +[package.extras] +ffmpeg = ["imageio-ffmpeg"] +fits = ["astropy"] +full = ["astropy", "gdal", "imageio-ffmpeg", "itk"] +gdal = ["gdal"] +itk = ["itk"] [[package]] category = "dev" @@ -236,7 +291,23 @@ description = "Getting image size from png/jpeg/jpeg2000/gif file" name = "imagesize" optional = false python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*" -version = "1.1.0" +version = "1.2.0" + +[[package]] +category = "dev" +description = "Read metadata from Python packages" +marker = "python_version < \"3.8\"" +name = "importlib-metadata" +optional = false +python-versions = "!=3.0.*,!=3.1.*,!=3.2.*,!=3.3.*,>=2.7" +version = "1.1.3" + +[package.dependencies] +zipp = ">=0.5" + +[package.extras] +docs = ["sphinx", "rst.linker"] +testing = ["packaging", "importlib-resources"] [[package]] category = "dev" @@ -244,8 +315,8 @@ description = "Read metadata from Python packages" marker = "python_version < \"3.8\"" name = "importlib-metadata" optional = false -python-versions = ">=2.7,!=3.0,!=3.1,!=3.2,!=3.3" -version = "0.23" +python-versions = "!=3.0.*,!=3.1.*,!=3.2.*,!=3.3.*,!=3.4.*,>=2.7" +version = "1.7.0" [package.dependencies] zipp = ">=0.5" @@ -258,6 +329,14 @@ version = ">=3.5" python = "<3" version = "*" +[package.dependencies.pathlib2] +python = "<3" +version = "*" + +[package.extras] +docs = ["sphinx", "rst.linker"] +testing = ["packaging", "pep517", "importlib-resources (>=1.3)"] + [[package]] category = "dev" description = "A Python utility / library to sort Python imports." @@ -275,6 +354,12 @@ version = "*" python = "<3.2" version = "*" +[package.extras] +pipfile = ["pipreqs", "requirementslib"] +pyproject = ["toml"] +requirements = ["pipreqs", "pip-api"] +xdg_home = ["appdirs (>=1.4.0)"] + [[package]] category = "dev" description = "A very fast and expressive template engine." @@ -286,6 +371,23 @@ version = "2.10.3" [package.dependencies] MarkupSafe = ">=0.23" +[package.extras] +i18n = ["Babel (>=0.8)"] + +[[package]] +category = "dev" +description = "A very fast and expressive template engine." +name = "jinja2" +optional = false +python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*" +version = "2.11.2" + +[package.dependencies] +MarkupSafe = ">=0.23" + +[package.extras] +i18n = ["Babel (>=0.8)"] + [[package]] category = "main" description = "A fast implementation of the Cassowary constraint solver" @@ -311,7 +413,7 @@ description = "Python plotting package" name = "matplotlib" optional = false python-versions = "*" -version = "2.2.4" +version = "2.2.5" [package.dependencies] cycler = ">=0.10" @@ -322,6 +424,21 @@ python-dateutil = ">=2.1" pytz = "*" six = ">=1.10" +[[package]] +category = "main" +description = "Python plotting package" +name = "matplotlib" +optional = false +python-versions = ">=3.5" +version = "3.0.3" + +[package.dependencies] +cycler = ">=0.10" +kiwisolver = ">=1.0.1" +numpy = ">=1.10.0" +pyparsing = ">=2.0.1,<2.0.4 || >2.0.4,<2.1.2 || >2.1.2,<2.1.6 || >2.1.6" +python-dateutil = ">=2.1" + [[package]] category = "dev" description = "McCabe checker, plugin for flake8" @@ -333,7 +450,7 @@ version = "0.6.1" [[package]] category = "dev" description = "More routines for operating on iterables, beyond itertools" -marker = "python_version < \"3.8\"" +marker = "python_version <= \"2.7\"" name = "more-itertools" optional = false python-versions = "*" @@ -345,12 +462,20 @@ six = ">=1.0.0,<2.0.0" [[package]] category = "dev" description = "More routines for operating on iterables, beyond itertools" -marker = "python_version < \"3.8\" or python_version > \"2.7\"" +marker = "python_version > \"2.7\"" name = "more-itertools" optional = false python-versions = ">=3.4" version = "7.2.0" +[[package]] +category = "dev" +description = "More routines for operating on iterables, beyond itertools" +name = "more-itertools" +optional = false +python-versions = ">=3.5" +version = "8.4.0" + [[package]] category = "dev" description = "Optional static typing for Python" @@ -364,6 +489,25 @@ mypy-extensions = ">=0.4.0,<0.5.0" typed-ast = ">=1.4.0,<1.5.0" typing-extensions = ">=3.7.4" +[package.extras] +dmypy = ["psutil (>=4.0)"] + +[[package]] +category = "dev" +description = "Optional static typing for Python" +name = "mypy" +optional = false +python-versions = ">=3.5" +version = "0.782" + +[package.dependencies] +mypy-extensions = ">=0.4.3,<0.5.0" +typed-ast = ">=1.4.0,<1.5.0" +typing-extensions = ">=3.7.4" + +[package.extras] +dmypy = ["psutil (>=4.0)"] + [[package]] category = "dev" description = "Experimental type system extensions for programs checked with the mypy typechecker." @@ -388,13 +532,58 @@ version = "2.2" [package.dependencies] decorator = ">=4.3.0" +[package.extras] +all = ["numpy", "scipy", "pandas", "matplotlib", "pygraphviz", "pydot", "pyyaml", "gdal", "lxml", "nose"] +gdal = ["gdal"] +lxml = ["lxml"] +matplotlib = ["matplotlib"] +nose = ["nose"] +numpy = ["numpy"] +pandas = ["pandas"] +pydot = ["pydot"] +pygraphviz = ["pygraphviz"] +pyyaml = ["pyyaml"] +scipy = ["scipy"] + +[[package]] +category = "main" +description = "Python package for creating and manipulating graphs and networks" +name = "networkx" +optional = false +python-versions = ">=3.5" +version = "2.4" + +[package.dependencies] +decorator = ">=4.3.0" + +[package.extras] +all = ["numpy", "scipy", "pandas", "matplotlib", "pygraphviz", "pydot", "pyyaml", "gdal", "lxml", "pytest"] +gdal = ["gdal"] +lxml = ["lxml"] +matplotlib = ["matplotlib"] +numpy = ["numpy"] +pandas = ["pandas"] +pydot = ["pydot"] +pygraphviz = ["pygraphviz"] +pytest = ["pytest"] +pyyaml = ["pyyaml"] +scipy = ["scipy"] + [[package]] category = "main" description = "NumPy is the fundamental package for array computing with Python." name = "numpy" optional = false python-versions = ">=2.7,!=3.0.*,!=3.1.*,!=3.2.*,!=3.3.*" -version = "1.16.5" +version = "1.16.6" + +[[package]] +category = "main" +description = "NumPy is the fundamental package for array computing with Python." +name = "numpy" +optional = false +python-versions = ">=3.5" +version = "1.18.5" [[package]] category = "dev" @@ -402,7 +591,7 @@ description = "Core utilities for Python packages" name = "packaging" optional = false python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*" -version = "19.2" +version = "20.4" [package.dependencies] pyparsing = ">=2.0.2" @@ -437,7 +626,7 @@ pytz = ">=2011k" [[package]] category = "main" description = "Object-oriented filesystem paths" -marker = "python_version == \"2.7\"" +marker = "platform_system == \"Windows\" and python_version == \"2.7\" or python_version == \"2.7\"" name = "pathlib" optional = false python-versions = "*" @@ -459,6 +648,14 @@ six = "*" python = "<3.5" version = "*" +[[package]] +category = "main" +description = "Python Imaging Library (Fork)" +name = "pillow" +optional = false +python-versions = ">=3.5" +version = "7.2.0" + [[package]] category = "main" description = "Python Imaging Library (Fork)" @@ -473,7 +670,7 @@ description = "Python Imaging Library (Fork)" name = "pillow" optional = false python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*" -version = "6.2.1" +version = "6.2.2" [[package]] category = "dev" @@ -481,20 +678,23 @@ description = "plugin and hook calling mechanisms for python" name = "pluggy" optional = false python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*" -version = "0.13.0" +version = "0.13.1" [package.dependencies] [package.dependencies.importlib-metadata] python = "<3.8" version = ">=0.12" +[package.extras] +dev = ["pre-commit", "tox"] + [[package]] category = "dev" description = "library with cross-python path, ini-parsing, io, code, log facilities" name = "py" optional = false python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*" -version = "1.8.0" +version = "1.9.0" [[package]] category = "dev" @@ -502,7 +702,7 @@ description = "Python style guide checker" name = "pycodestyle" optional = false python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*" -version = "2.5.0" +version = "2.6.0" [[package]] category = "dev" @@ -510,7 +710,7 @@ description = "passive checker of Python programs" name = "pyflakes" optional = false python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*" -version = "2.1.1" +version = "2.2.0" [[package]] category = "dev" @@ -526,7 +726,15 @@ description = "Pygments is a syntax highlighting package written in Python." name = "pygments" optional = false python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*" -version = "2.4.2" +version = "2.5.2" + +[[package]] +category = "dev" +description = "Pygments is a syntax highlighting package written in Python." +name = "pygments" +optional = false +python-versions = ">=3.5" +version = "2.6.1" [[package]] category = "main" @@ -534,7 +742,7 @@ description = "Python parsing module" name = "pyparsing" optional = false python-versions = ">=2.6, !=3.0.*, !=3.1.*, !=3.2.*" -version = "2.4.5" +version = "2.4.7" [[package]] category = "dev" @@ -542,18 +750,25 @@ description = "pytest: simple powerful testing with Python" name = "pytest" optional = false python-versions = "!=3.0.*,!=3.1.*,!=3.2.*,!=3.3.*,>=2.7" -version = "4.6.6" +version = "4.6.11" [package.dependencies] atomicwrites = ">=1.0" attrs = ">=17.4.0" -colorama = "*" packaging = "*" pluggy = ">=0.12,<1.0" py = ">=1.5.0" six = ">=1.10.0" wcwidth = "*" +[[package.dependencies.colorama]] +python = "<3.4.0 || >=3.5.0" +version = "*" + +[[package.dependencies.colorama]] +python = ">=3.4,<3.5" +version = "<=0.4.1" + [[package.dependencies.more-itertools]] python = "<2.8" version = ">=4.0.0,<6.0.0" @@ -574,6 +789,39 @@ version = ">=0.12" python = "<3.6" version = ">=2.2.0" +[package.extras] +testing = ["argcomplete", "hypothesis (>=3.56)", "nose", "requests", "mock"] + +[[package]] +category = "dev" +description = "pytest: simple powerful testing with Python" +name = "pytest" +optional = false +python-versions = ">=3.5" +version = "5.4.3" + +[package.dependencies] +atomicwrites = ">=1.0" +attrs = ">=17.4.0" +colorama = "*" +more-itertools = ">=4.0.0" +packaging = "*" +pluggy = ">=0.12,<1.0" +py = ">=1.5.0" +wcwidth = "*" + +[package.dependencies.importlib-metadata] +python = "<3.8" +version = ">=0.12" + +[package.dependencies.pathlib2] +python = "<3.6" +version = ">=2.2.0" + +[package.extras] +checkqa-mypy = ["mypy (v0.761)"] +testing = ["argcomplete", "hypothesis (>=3.56)", "mock", "nose", "requests", "xmlschema"] + [[package]] category = "main" description = "Extensions to the standard Python datetime module" @@ -591,7 +839,7 @@ description = "World timezone definitions, modern and historical" name = "pytz" optional = false python-versions = "*" -version = "2019.3" +version = "2020.1" [[package]] category = "main" @@ -604,6 +852,17 @@ version = "1.1.0" [package.dependencies] numpy = ">=1.13.3" +[[package]] +category = "main" +description = "PyWavelets, wavelet transform module" +name = "pywavelets" +optional = false +python-versions = ">=3.5" +version = "1.1.1" + +[package.dependencies] +numpy = ">=1.13.3" + [[package]] category = "dev" description = "Python HTTP for Humans." @@ -618,20 +877,28 @@ chardet = ">=3.0.2,<3.1.0" idna = ">=2.5,<2.9" urllib3 = ">=1.21.1,<1.25" +[package.extras] +security = ["pyOpenSSL (>=0.14)", "cryptography (>=1.3.4)", "idna (>=2.0.0)"] +socks = ["PySocks (>=1.5.6,<1.5.7 || >1.5.7)", "win-inet-pton"] + [[package]] category = "dev" description = "Python HTTP for Humans." name = "requests" optional = false python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*" -version = "2.22.0" +version = "2.24.0" [package.dependencies] certifi = ">=2017.4.17" -chardet = ">=3.0.2,<3.1.0" -idna = ">=2.5,<2.9" +chardet = ">=3.0.2,<4" +idna = ">=2.5,<3" urllib3 = ">=1.21.1,<1.25.0 || >1.25.0,<1.25.1 || >1.25.1,<1.26" +[package.extras] +security = ["pyOpenSSL (>=0.14)", "cryptography (>=1.3.4)"] +socks = ["PySocks (>=1.5.6,<1.5.7 || >1.5.7)", "win-inet-pton"] + [[package]] category = "dev" description = "scandir, a better directory iterator and faster os.walk()" @@ -675,24 +942,56 @@ pillow = ">=4.3.0" scipy = ">=0.17.0" six = ">=1.10.0" +[[package]] +category = "main" +description = "Image processing routines for SciPy" +name = "scikit-image" +optional = false +python-versions = ">=3.5" +version = "0.15.0" + +[package.dependencies] +PyWavelets = ">=0.4.0" +imageio = ">=2.0.1" +matplotlib = ">=2.0.0,<3.0.0 || >3.0.0" +networkx = ">=2.0" +pillow = ">=4.3.0" +scipy = ">=0.17.0" + +[package.extras] +docs = ["sphinx (>=1.3,<1.7.8 || >1.7.8)", "numpydoc (>=0.6)", "sphinx-gallery", "sphinx-copybutton", "pytest-runner", "scikit-learn", "dask (>=0.9.0)", "cloudpickle (>=0.2.1)"] +optional = ["simpleitk", "astropy (>=1.2.0)", "tifffile", "qtpy", "pyamg", "dask (>=0.9.0)", "cloudpickle (>=0.2.1)"] +test = ["pytest (!=3.7.3)", "pytest-cov", "pytest-localserver", "flake8", "codecov", "pytest-faulthandler"] + [[package]] category = "main" description = "SciPy: Scientific Library for Python" name = "scipy" optional = false python-versions = ">=2.7,!=3.0.*,!=3.1.*,!=3.2.*,!=3.3.*" -version = "1.2.2" +version = "1.2.3" [package.dependencies] numpy = ">=1.8.2" +[[package]] +category = "main" +description = "SciPy: Scientific Library for Python" +name = "scipy" +optional = false +python-versions = ">=3.5" +version = "1.4.1" + +[package.dependencies] +numpy = ">=1.13.3" + [[package]] category = "main" description = "Python 2 and 3 compatibility utilities" name = "six" optional = false -python-versions = ">=2.6, !=3.0.*, !=3.1.*" -version = "1.13.0" +python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*" +version = "1.15.0" [[package]] category = "dev" @@ -729,6 +1028,113 @@ sphinxcontrib-websupport = "*" python = "<3.5" version = "*" +[package.extras] +test = ["mock", "pytest", "pytest-cov", "html5lib", "flake8 (>=3.5.0)", "flake8-import-order", "enum34", "mypy", "typed-ast"] +websupport = ["sqlalchemy (>=0.9)", "whoosh (>=2.0)"] + +[[package]] +category = "dev" +description = "Python documentation generator" +name = "sphinx" +optional = false +python-versions = ">=3.5" +version = "3.1.2" + +[package.dependencies] +Jinja2 = ">=2.3" +Pygments = ">=2.0" +alabaster = ">=0.7,<0.8" +babel = ">=1.3" +colorama = ">=0.3.5" +docutils = ">=0.12" +imagesize = "*" +packaging = "*" +requests = ">=2.5.0" +setuptools = "*" +snowballstemmer = ">=1.1" +sphinxcontrib-applehelp = "*" +sphinxcontrib-devhelp = "*" +sphinxcontrib-htmlhelp = "*" +sphinxcontrib-jsmath = "*" +sphinxcontrib-qthelp = "*" +sphinxcontrib-serializinghtml = "*" + +[package.extras] +docs = ["sphinxcontrib-websupport"] +lint = ["flake8 (>=3.5.0)", "flake8-import-order", "mypy (>=0.780)", "docutils-stubs"] +test = ["pytest", "pytest-cov", "html5lib", "typed-ast", "cython"] + +[[package]] +category = "dev" +description = "sphinxcontrib-applehelp is a sphinx extension which outputs Apple help books" +name = "sphinxcontrib-applehelp" +optional = false +python-versions = ">=3.5" +version = "1.0.2" + +[package.extras] +lint = ["flake8", "mypy", "docutils-stubs"] +test = ["pytest"] + +[[package]] +category = "dev" +description = "sphinxcontrib-devhelp is a sphinx extension which outputs Devhelp document." +name = "sphinxcontrib-devhelp" +optional = false +python-versions = ">=3.5" +version = "1.0.2" + +[package.extras] +lint = ["flake8", "mypy", "docutils-stubs"] +test = ["pytest"] + +[[package]] +category = "dev" +description = "sphinxcontrib-htmlhelp is a sphinx extension which renders HTML help files" +name = "sphinxcontrib-htmlhelp" +optional = false +python-versions = ">=3.5" +version = "1.0.3" + +[package.extras] +lint = ["flake8", "mypy", "docutils-stubs"] +test = ["pytest", "html5lib"] + +[[package]] +category = "dev" +description = "A sphinx extension which renders display math in HTML via JavaScript" +name = "sphinxcontrib-jsmath" +optional = false +python-versions = ">=3.5" +version = "1.0.1" + +[package.extras] +test = ["pytest", "flake8", "mypy"] + +[[package]] +category = "dev" +description = "sphinxcontrib-qthelp is a sphinx extension which outputs QtHelp document." +name = "sphinxcontrib-qthelp" +optional = false +python-versions = ">=3.5" +version = "1.0.3" + +[package.extras] +lint = ["flake8", "mypy", "docutils-stubs"] +test = ["pytest"] + +[[package]] +category = "dev" +description = "sphinxcontrib-serializinghtml is a sphinx extension which outputs \"serialized\" HTML files (json and pickle)." +name = "sphinxcontrib-serializinghtml" +optional = false +python-versions = ">=3.5" +version = "1.1.4" + +[package.extras] +lint = ["flake8", "mypy", "docutils-stubs"] +test = ["pytest"] + [[package]] category = "dev" description = "Sphinx API for Web Apps" @@ -737,6 +1143,9 @@ optional = false python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*" version = "1.1.2" +[package.extras] +test = ["pytest", "mock"] + [[package]] category = "main" description = "Read and write TIFF(r) files" @@ -761,13 +1170,16 @@ version = "*" python = ">=2.7,<2.8" version = "*" +[package.extras] +all = ["matplotlib (>=2.2)", "imagecodecs (>=2019.5.22)"] + [[package]] category = "dev" description = "a fork of Python 2 and 3 ast modules with type comment support" name = "typed-ast" optional = false python-versions = "*" -version = "1.4.0" +version = "1.4.1" [[package]] category = "dev" @@ -775,8 +1187,8 @@ description = "Type Hints for Python" marker = "python_version < \"3.5\"" name = "typing" optional = false -python-versions = "*" -version = "3.7.4.1" +python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*" +version = "3.7.4.3" [[package]] category = "dev" @@ -784,7 +1196,7 @@ description = "Backported and Experimental Type Hints for Python 3.5+" name = "typing-extensions" optional = false python-versions = "*" -version = "3.7.4.1" +version = "3.7.4.2" [package.dependencies] [package.dependencies.typing] @@ -799,13 +1211,34 @@ optional = false python-versions = "*" version = "1.22" +[package.extras] +secure = ["pyOpenSSL (>=0.14)", "cryptography (>=1.3.4)", "idna (>=2.0.0)", "certifi", "ipaddress"] +socks = ["PySocks (>=1.5.6,<1.5.7 || >1.5.7,<2.0)"] + [[package]] category = "dev" description = "HTTP library with thread-safe connection pooling, file post, and more." name = "urllib3" optional = false python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, <4" -version = "1.25.7" +version = "1.24.3" + +[package.extras] +secure = ["pyOpenSSL (>=0.14)", "cryptography (>=1.3.4)", "idna (>=2.0.0)", "certifi", "ipaddress"] +socks = ["PySocks (>=1.5.6,<1.5.7 || >1.5.7,<2.0)"] + +[[package]] +category = "dev" +description = "HTTP library with thread-safe connection pooling, file post, and more." +name = "urllib3" +optional = false +python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*, <4" +version = "1.25.9" + 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[tool.poetry.dev-dependencies] sphinx = "*" diff --git a/setup.py b/setup.py index a9e2915..9669a67 100644 --- a/setup.py +++ b/setup.py @@ -10,7 +10,7 @@ setup( name='imctools', - version='1.0.7', + version='1.0.8', description='Tools to handle IMC data', long_description=readme, author='Vito Zanotelli', @@ -19,7 +19,7 @@ license=license, packages=find_packages(exclude=('tests', 'docs')), install_requires=[ - 'tifffile>=2019.7.26', + 'tifffile==2019.7.26', 'scikit-image', 'pandas' ]