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NEWS
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NEWS
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CHANGES IN VERSION 1.34
-----------------------
BUG FIXES
o (v 1.33.1) reduceRanges() supports `files` as character vectors.
CHANGES IN VERSION 1.18.0
------------------------
NEW FEATURES
o (v. 1.17.3) Add vcfFields,VcfStack-method.
CHANGES IN VERSION 1.6.0
------------------------
BUG FIXES
o dimnames<- correctly updates dim names
MODIFICATIONS
o Defunct *FileViews classes
CHANGES IN VERSION 1.4.0
------------------------
NEW FEATURES
o Add reduceFiles() and reduceRanges()
o Add 'algorithm' argument to summarizeOverlaps methods
o Add REDUCEsampler() from Martin
MODIFICATIONS
o Deprecate *FileViews classes
o Modify show() for GenomicFiles class
o Add 'Chunking' section to vignette
o Update vignette figures
o Change REDUCE default from `+` to `c` for reduceByYield()
BUG FIXES
o Bug fix for reduceByRange,GenomicFiles-method
CHANGES IN VERSION 1.2.0
------------------------
NEW FEATURES
o Add pack / unpack generics and methods.
o Add GenomicFiles class.
o Add reduceByFile / reduceByRange methods for GenomicFiles
class that expect 'file' to be character and 'ranges' a GRanges.
o Move "yieldReduce" from Rsamtools to GenomicFiles and
rename as "reduceByYield".
o Allow GRange or GRangesList as @rowData in GenomicFiles class.
MODIFICATIONS
o Remove unused .FileList, VCFFileViews and FaFileViews class.
o Add checks for 'summarize=FALSE' when REDUCER is used.
o Clean up vignette introduction.
o Change REDUCER() signature to single argument reguardless
of the value of 'iterate'.
o Rework reduceByYield() arguments for consistency with other
reduceBy* functions.
CHANGES IN VERSION 1.0.0
------------------------
NEW FEATURES
o First release of GenomicFiles package.