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update changelog
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a-r-j committed Aug 1, 2024
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# Release Notes ![](img/logos/3eiy_120.png)
- Supports `mol` files that have empty lines between blocks, (Via [Ruibin Liu](https://github.com/Ruibin-Liu) PR #[140](https://github.com/BioPandas/biopandas/pull/140#))

- Supports `mol` files that have empty lines between blocks, (Via [Ruibin Liu](https://github.com/Ruibin-Liu) PR #[140](https://github.com/BioPandas/biopandas/pull/140#))

The CHANGELOG for the current development version is available at
[https://github.com/rasbt/biopandas/blob/main/docs/sources/CHANGELOG.md](https://github.com/rasbt/biopandas/blob/main/docs/sources/CHANGELOG.md).

### 0.5.1dev1 (UNRELEASED)

- Feature: added method to `PandasMmcif` that allow to select by model ids. PR #[145](https://github.com/BioPandas/biopandas/pull/145))
- Dev: switched testing framework entirely to pytest. Drops nose dependency due to version conflicts with Python 3.12 (`nose`) and 3.8 (`nose`) PR #[146](https://github.com/BioPandas/biopandas/pull/146))
- Avoid inclusion of test scripts and test data in the PyPI release of the Biopandas library. PR #[148](https://github.com/BioPandas/biopandas/pull/148). Addresses issue [#147](https://github.com/BioPandas/biopandas/issues/147)
### 0.5.1 (01/08/2024)

- Fix: improves support for writing PDBs with `OTHERS` records to stream. PR [#149](https://github.com/BioPandas/biopandas/pull/149). Addresses issue [#141](https://github.com/BioPandas/biopandas/issues/141).
- Feature: added method to `PandasMmcif` that allow to select by model ids. PR #[145](https://github.com/BioPandas/biopandas/pull/145)
- Dev: switched testing framework entirely to pytest. Drops nose dependency due to version conflicts with Python 3.12 (`nose`) and 3.8 (`nose`) PR #[146](https://github.com/BioPandas/biopandas/pull/146)
- Dev: adds GitHub actions-based CI. PR [#149](https://github.com/BioPandas/biopandas/pull/149).
- Avoid inclusion of test scripts and test data in the PyPI release of the Biopandas library. PR #[148](https://github.com/BioPandas/biopandas/pull/148). Addresses issue [#147](https://github.com/BioPandas/biopandas/issues/147)

### 0.5.0dev1 (31/7/2023)

- Implement add_remark for PandasPdb, (Via [Anton Bushuiev](https://github.com/anton-bushuiev) PR #[129](https://github.com/BioPandas/biopandas/pull/129))
- B_factor shifting one white space issue fix. (Via [Zehra Sarica](https://github.com/zehraacarsarica), PR #[134](https://github.com/BioPandas/biopandas/pull/134))
- Adds support for pathlib. (Via [Anton Bushuiev](https://github.com/anton-bushuiev), PR #[128](https://github.com/BioPandas/biopandas/pull/128))
Expand All @@ -20,7 +23,6 @@ The CHANGELOG for the current development version is available at
- Improves reliability of parsing multicharacter chain IDs from MMTF files. (Via [Arian Jamasb](https://github.com/a-r-j), PR #[123](https://github.com/rasbt/biopandas/pull/123/files))
- Replaces null terminator chars in parsed MMTF dataframe with the empty string. (Via [Arian Jamasb](https://github.com/a-r-j), PR #[123](https://github.com/rasbt/biopandas/pull/123/files))


### 0.5.0dev0 (3/4/2023)

##### Downloads
Expand All @@ -37,14 +39,14 @@ The CHANGELOG for the current development version is available at
- Adds support for parsing [MMTF](https://mmtf.rcsb.org/) files. (via [Arian Jamasb](https://github.com/a-r-j), PR #[111](https://github.com/rasbt/biopandas/pull/111/files))
- Adds primitive functions for parsing PDB, mmCIF, and MMTF into dataframes. (via [Arian Jamasb](https://github.com/a-r-j), PR #[111](https://github.com/rasbt/biopandas/pull/111/files))
- Added support for [AlphaFolds 200M+ structures](https://www.deepmind.com/blog/alphafold-reveals-the-structure-of-the-protein-universe) via `PandasMmcif().fetch_mmcif(uniprot_id='Q5VSL9', source='alphafold2-v3')` and `PandasPdb().fetch_pdb(uniprot_id='Q5VSL9', source='alphafold2-v3')`. (Via [Arian Jamasb](https://github.com/a-r-j), PR #[102](https://github.com/rasbt/biopandas/pull/102/files))

##### Bug Fixes

- Fix the `return` statement in `PandasPdb.to_pdb_stream()` to return `output` instead of `output.seek(0)`. (via [goniochromatic](https://github.com/github.com/goniochromatic/), PR #[116](https://github.com/rasbt/biopandas/pull/116/files))
- Change the `records` default argument in `PandasPdb.to_pdb_stream()` to be immutable. (via [goniochromatic](https://github.com/github.com/goniochromatic/), PR #[116](https://github.com/rasbt/biopandas/pull/116/files))
- Fix some typos and general style issues. (via [goniochromatic](https://github.com/github.com/goniochromatic/), PR #[116](https://github.com/rasbt/biopandas/pull/116/files))
- Fix link for "How to contribute" in `README.md`. (via [goniochromatic](https://github.com/github.com/goniochromatic/), PR #[116](https://github.com/rasbt/biopandas/pull/116/files))


### 0.4.1 (05-13-2022)

##### Downloads
Expand All @@ -56,7 +58,6 @@ The CHANGELOG for the current development version is available at

- Remove walrus operator for Python 3.7 compatibility.


### 0.4.0 (05-11-2022)

##### Downloads
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##### New Features

- -
- -

##### Changes

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##### Bug Fixes

- -
- -

### 0.2.8 (03-30-2021)

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##### Bug Fixes

- -
- -

### 0.2.7 (08-04-2020)

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##### New Features

- -
- -

##### Changes

- -
- -

##### Bug Fixes

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##### New Features

- -
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##### Changes

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##### Bug Fixes

- -
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### 0.2.5 (07-09-2019)

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##### New Features

- -
- -

##### Changes

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- -

##### Bug Fixes

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##### New Features

- -
- -

##### Changes

- Minor adjustments to support to address deprecation warnings in pandas >= 23.0

##### Bug Fixes

- -
- -

### 0.2.3 (03-29-2018)

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##### New Features

- -
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##### Changes

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##### New Features

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##### Changes

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##### New Features

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##### Changes

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##### Bug Fixes

- -
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### 0.1.5 (2016-11-19)

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##### Bug Fixes

- -
- -

### 0.1.4 (2015-11-24)

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