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ChangeLog
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ChangeLog
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Unreleased
* Switch to ONNX for model storage
Version 1.5.0 2024-09-20
* Add support for local searching
* Slightly change output format for AMPSphere matching
* Add --verbose and --quiet flags
Version 1.4.0 2024-06-27
* Query AMPSphere online
Version 1.3.0 2023-12-05
* Add compatibility with Pyrodigal ≥3
* Add density estimates to output
Version 1.2.0 2022-05-09
* Use pyrodigal instead of Prodigal_sm for gene prediction
* Correct bug in the generation of README files in the output folder
Version 1.1.0 2021-11-08
* Fix classifier list for PyPI
* Add support for .bz2 & .xz fasta files
* Eliminated R dependency
* Include more extensive testing
* New feature implementation made Macrel about 3.5 times faster than before
* Fix abundance/reads modes when single-ended reads were used
Version 1.0.1 2021-09-02
* No longer crash on very short peptides (1 or 2 amino acids)
Version 1.0.0 2020-12-20
* Add README.md files to the output directories documenting the output files
Version 0.6.1 2020-10-29
* Make atomicwrites an optional dependency
Version 0.6.0 2020-10-10
* Add --log-append flag
* Add --log-file argument
* Add usage example in command line help message
* Use atomic writing for output
Version 0.5.0 2020-05-11
* Fix bug with Prodigal by changing internal parameters
* Fix bug with using --force and existing directories
* Add version to header in output table
Version 0.4.0 2020-03-16
* Remove Methionine from N-terminus
* Fix for when no smORFs are present
* Add --keep-negatives flag
* Add warning for longer sequences
Version 0.3.1 2020-01-24
* Fix for Python 2.7
Version 0.3.0 2020-01-24
* Add get-examples command
* Add get-smorfs command
* Convert to scikit-learn
* Updated training sets
* Fix license (must be GPL because of Peptides)
Version 0.2.0 2020-01-14
* Complete release