diff --git a/_sources/stefan_hahmann/elephant_server_installation_windows/readme.md b/_sources/stefan_hahmann/elephant_server_installation_windows/readme.md index 336d7ed..597b1b7 100644 --- a/_sources/stefan_hahmann/elephant_server_installation_windows/readme.md +++ b/_sources/stefan_hahmann/elephant_server_installation_windows/readme.md @@ -104,6 +104,8 @@ Including `sudo` may not be required on every machine. ```console sudo make build ``` + +### Troubleshooting If you get an error message that docker is not found, you can try to install docker inside WSL. ```console diff --git a/searchindex.js b/searchindex.js index b18a3d5..6d8a3f0 100644 --- a/searchindex.js +++ b/searchindex.js @@ -1 +1 @@ -Search.setIndex({"docnames": ["imprint", "intro", "johannes_mueller/Readme", "johannes_mueller/anaconda_getting_started/Readme", "johannes_mueller/entry_sphinx/Readme", "johannes_mueller/entry_user_inter/Readme", "johannes_mueller/entry_user_interf2/Readme", 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26, 27, 29, 30, 31], "hi": [2, 10, 14, 16, 21, 28, 30, 36, 37, 38], "my": [2, 3, 5, 9, 10, 11, 14, 16, 24, 27, 28, 29, 30, 31, 36, 37, 38], "i": [2, 3, 4, 5, 6, 9, 10, 11, 12, 13, 14, 16, 20, 23, 24, 25, 27, 28, 29, 30, 31, 32, 33, 36, 37, 38], "origin": [2, 13, 15, 28, 29, 30, 31, 32, 36], "No": [2, 3, 11, 23, 32, 38], "code": [2, 3, 4, 5, 6, 7, 9, 10, 11, 12, 13, 18, 19, 20, 22, 27, 28, 29, 30, 31, 32, 34, 35, 38], "biologi": [2, 10, 26, 33, 38], "just": [2, 3, 7, 9, 11, 12, 13, 14, 15, 18, 19, 23, 25, 27, 28, 29, 30, 31, 32, 38], "classic": 2, "laser": 2, "calcul": [2, 7], "stuff": 2, "like": [2, 3, 4, 5, 6, 7, 9, 10, 11, 12, 13, 14, 15, 18, 19, 20, 21, 22, 23, 24, 25, 27, 28, 29, 30, 31, 32, 33, 35, 37, 38], "As": [2, 3, 6, 7, 11, 15, 22, 25, 26, 28, 29, 32], "start": [2, 6, 7, 10, 11, 12, 13, 14, 15, 16, 18, 19, 20, 21, 22, 23, 24, 25, 26, 28, 29], "progress": [2, 15], "through": [2, 3, 4, 5, 6, 7, 9, 12, 14, 15, 18, 19, 22, 27, 30, 31, 32], "academ": 2, "cycl": 2, "began": 2, "interest": [2, 5, 6, 11, 12, 13, 14, 19, 20, 27], "thermograph": 2, "imag": [2, 3, 4, 5, 6, 7, 9, 10, 11, 12, 13, 15, 16, 18, 24, 26, 30, 31, 34, 36], "breast": 2, "cancer": [2, 24], "lesion": 2, "master": [2, 4, 16, 32, 33], "thesi": [2, 32], "micro": 2, "environment": 2, "featur": [2, 3, 7, 28, 29, 30, 31, 33, 38], "head": [2, 18, 19, 24], "neck": 2, "tumor": [2, 24], "mice": [2, 14], "dure": [2, 3, 9, 10, 14, 16, 18, 19, 35, 36, 38], "phd": [2, 14, 16, 36], "got": [2, 14, 15, 27], "biolog": 2, "system": [2, 5, 9, 20, 22, 27, 34, 35, 38], "fascin": 2, "overwhelm": 2, "complex": [2, 6, 7, 11], "varianc": [2, 32], "approach": [2, 6, 11, 38], "address": [2, 6, 12, 15, 20, 38], "In": [2, 3, 4, 5, 6, 7, 9, 10, 11, 12, 13, 14, 15, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 37, 38], "particular": [2, 7, 13, 23], "recent": [2, 13, 16, 25], "finish": [2, 3, 4, 5, 9, 14, 15, 35], "includ": [2, 4, 9, 11, 12, 14, 27, 28, 29, 30, 31, 32, 34, 35, 37, 38], "analyz": [2, 15, 37, 38], "larg": [2, 4, 7, 12, 21, 22, 27, 30, 31, 38], "scale": [2, 7], "microscop": [2, 7, 16], "20000": 2, "x": [2, 5, 6, 18, 19, 28, 29, 32, 38], "pixel": [2, 28, 29, 30, 31], "sampl": [2, 13, 18, 19, 20, 25], "wai": [2, 3, 5, 6, 7, 11, 12, 14, 18, 19, 26, 27, 30, 31, 32, 38], "would": [2, 4, 6, 7, 9, 10, 12, 13, 20, 21, 22, 27, 28, 29, 32, 37, 38], "reproduc": [2, 38], "time": [2, 3, 4, 5, 7, 11, 12, 14, 18, 19, 20, 21, 22, 23, 28, 29, 32, 34, 36, 37, 38], "wise": [2, 6], "feasibl": [2, 37], "enter": [2, 3, 4, 6, 9, 12, 20, 25, 27, 34, 35, 38], "bio": [2, 3, 9, 10, 15, 16, 24, 25, 26, 36], "analysi": [2, 3, 9, 10, 14, 15, 16, 19, 24, 26, 30, 31, 36, 38], "2021": [2, 4, 5, 6, 11, 12, 13, 14, 16, 19, 20, 22, 23, 25, 26, 27, 29, 31, 32], "becam": [2, 10], "part": [2, 7, 10, 14, 18, 19, 25, 27, 28, 29, 30, 31, 32, 35, 37, 38], "pol": [2, 10, 16, 24, 36, 38], "task": [2, 5, 7, 37, 38], "tailor": 2, "workflow": [2, 3, 4, 14, 20, 28, 29, 36, 37, 38], "fellow": 2, "educ": [2, 30, 31], "empow": 2, "them": [2, 3, 6, 7, 9, 11, 12, 13, 15, 18, 19, 25, 28, 29, 30, 31, 32, 38], "new": [2, 4, 5, 6, 7, 11, 12, 13, 14, 15, 19, 21, 25, 26, 27, 28, 29, 35, 37, 38], "method": [2, 5, 6, 11, 12, 18, 19, 27, 28, 29, 30, 31, 32], "deploi": [2, 38], "mani": [2, 5, 6, 7, 11, 13, 21, 22, 30, 31, 32, 38], "possibl": [2, 6, 11, 13, 14, 21, 22, 35], "gui": [2, 7, 16], "python": [2, 4, 10, 13, 16, 21, 22, 23, 24, 30, 31, 32, 35, 36, 37, 38], "get": [2, 6, 7, 10, 11, 12, 13, 14, 18, 19, 20, 21, 22, 25, 26, 28, 29, 30, 31, 32, 34, 35, 37], "advanc": [2, 5, 16, 33, 37, 38], "qt": [2, 5, 11, 12], "design": [2, 11, 12, 16], "autom": [2, 12, 19, 32], "document": [2, 3, 11, 12, 13, 35, 37, 38], "sphinx": [2, 12], "anaconda": [2, 4, 5, 6, 7, 12, 27, 28, 29, 30, 31], "bia": [2, 10, 16, 24, 26, 36, 38], "websit": [2, 10, 11, 12, 13, 16, 18, 19, 23, 24, 25, 34], "twitter": [2, 10, 16, 24, 33, 36], "m\u00fcller": [3, 4, 5, 6, 12, 17], "2022": [3, 10, 12, 14, 15, 36, 37, 38], "note": [3, 4, 6, 7, 9, 11, 12, 18, 19, 22, 23, 25, 37, 38], "instruct": [3, 9, 12, 15, 20, 22, 25, 34, 35, 37, 38], "blog": [3, 4, 5, 6, 7, 9, 11, 12, 19, 20, 22, 23, 27, 29, 30, 31, 33, 34, 35], "post": [3, 4, 7, 9, 11, 12, 19, 20, 22, 23, 27, 28, 29, 30, 31, 34, 35], "outdat": 3, "updat": [3, 6, 9, 10, 11, 19, 33, 34], "cover": [3, 4, 5, 6, 7, 11, 12, 27, 33], "all": [3, 4, 5, 6, 7, 9, 10, 11, 12, 13, 18, 19, 22, 25, 26, 27, 28, 29, 30, 31, 32, 33, 37, 38], "necessari": [3, 6, 9, 12, 23, 25, 32, 38], "step": [3, 6, 9, 11, 12, 13, 15, 25, 27, 28, 29, 30, 31, 32, 34], "download": [3, 4, 5, 6, 7, 9, 11, 12, 13, 15, 18, 25, 27, 28, 29, 34, 35, 38], "setup": [3, 9, 12, 37, 38], "your": [3, 7, 9, 15, 19, 20, 23, 25, 28, 29, 32, 33, 34, 36], "machin": [3, 24, 36, 38], "guid": [3, 9, 13], "readi": [3, 4, 7, 9, 12, 13], "befor": [3, 4, 6, 7, 11, 12, 13, 15, 21, 22, 25, 27, 30, 31, 32, 34, 35, 36, 37, 38], "do": [3, 4, 5, 6, 7, 9, 11, 12, 13, 14, 21, 22, 23, 25, 26, 27, 28, 29, 30, 31, 32, 34, 37, 38], "need": [3, 4, 6, 7, 9, 11, 12, 15, 18, 19, 20, 21, 22, 23, 25, 26, 28, 29, 30, 31, 32, 34, 35, 38], "first": [3, 4, 5, 6, 9, 10, 12, 14, 18, 19, 20, 27, 28, 29, 30, 31, 32, 37], "place": [3, 6, 7, 11, 15], "explain": [3, 9, 11, 12, 15, 32, 37, 38], "bit": [3, 4, 6, 7, 11, 19, 23, 27, 28, 29, 30, 31], "detail": [3, 7, 25, 27, 28, 29, 37], "here": [3, 4, 5, 6, 7, 9, 11, 12, 13, 15, 19, 22, 24, 25, 26, 27, 28, 29, 30, 31, 32, 34, 38], "A": [3, 4, 7, 9, 12, 13, 14, 15, 18, 19, 20, 21, 22, 25, 28, 29, 32, 35, 38], "few": [3, 4, 5, 6, 7, 11, 12, 15, 27, 28, 29, 30, 31, 32, 38], "kei": [3, 7, 9, 15, 18, 19, 32], "program": [3, 5, 6, 9, 13, 18, 19, 24, 25, 27, 28, 29, 30, 31, 33, 35, 38], "languag": [3, 4, 9, 13, 14, 30, 31, 35, 38], "simplifi": [3, 11], "collabor": [3, 20, 24, 26, 35], "between": [3, 9, 10, 12, 14, 25, 26, 30, 31, 36, 38], "scientist": [3, 10, 14, 19, 24, 33], "from": [3, 4, 5, 6, 8, 9, 13, 14, 15, 16, 18, 19, 20, 21, 22, 24, 25, 27, 28, 29, 30, 31, 32, 34, 35, 37, 38], "disciplin": 3, "everyon": [3, 12, 14], "write": [3, 4, 6, 7, 9, 11, 12, 22, 27, 28, 29, 30, 31, 34, 38], "script": [3, 5, 6, 12, 37], "modul": [3, 4, 10, 11, 12, 13, 36], "everybodi": 3, "els": [3, 5, 7, 11, 12, 23, 28, 29, 30, 31], "while": [3, 6, 7, 9, 23, 25, 32, 35, 37], "enabl": [3, 11, 12, 13, 20], "project": [3, 4, 6, 9, 12, 14, 15, 18, 19, 27, 28, 29, 30, 31, 32, 34, 38], "entir": [3, 7], "level": [3, 4, 7, 11, 12, 15], "sometim": [3, 4, 5, 6, 11, 28, 29, 30, 31], "tricki": [3, 7, 23], "right": [3, 6, 7, 8, 11, 12, 13, 15, 19, 23, 25, 32, 37, 38], "version": [3, 9, 11, 20, 21, 25, 27, 34, 35, 38], "make": [3, 5, 6, 7, 9, 11, 12, 18, 19, 20, 21, 22, 25, 27, 28, 29, 30, 31, 34, 37, 38], "run": [3, 5, 6, 7, 9, 12, 13, 21, 22, 25, 27, 28, 29, 34, 36, 37], "each": [3, 7, 11, 12, 27, 28, 29, 30, 31, 32], "comput": [3, 4, 9, 10, 11, 20, 21, 22, 23, 24, 25, 28, 29, 35, 37, 38], "ensur": [3, 9, 38], "compat": [3, 9, 21, 22, 27, 34], "allow": [3, 4, 5, 6, 7, 9, 13, 15, 18, 19, 20, 27, 30, 31, 33, 34, 35], "call": [3, 4, 6, 7, 9, 12, 13, 15, 16, 18, 19, 27, 28, 29, 30, 31, 32, 33, 35], "It": [3, 4, 5, 6, 7, 9, 11, 12, 13, 15, 19, 20, 23, 27, 28, 29, 30, 31, 33, 34, 35, 37, 38], "recommend": [3, 4, 5, 6, 9, 14, 21, 22, 25, 32, 38], "one": [3, 4, 5, 6, 7, 9, 11, 12, 13, 15, 19, 20, 22, 27, 28, 29, 30, 31, 32, 37, 38], "everi": [3, 4, 5, 6, 7, 9, 10, 11, 13, 20, 27, 28, 29, 32, 33, 34], "text": [3, 4, 6, 15, 28, 30, 32, 35, 38], "public": [3, 4, 12, 18, 19, 26], "much": [3, 4, 7, 13, 27, 28, 29, 30, 31, 32, 33, 37, 38], "easier": [3, 6, 22, 23, 27, 30, 31, 33, 37], "maintain": [3, 9, 11], "relev": [3, 14], "given": [3, 5, 19, 30, 31], "tutori": [3, 4, 6, 7, 9, 11, 12, 13, 15, 20, 22, 27], "done": [3, 4, 5, 6, 7, 11, 12, 13, 15, 16, 28, 29, 32, 37], "window": [3, 5, 6, 7, 8, 11, 12, 15, 18, 19, 24, 27, 35, 38], "should": [3, 4, 5, 6, 7, 9, 11, 12, 13, 15, 25, 27, 28, 29, 30, 31, 32, 34, 35, 37, 38], "equal": [3, 30, 31, 32], "mac": [3, 34, 35], "os": [3, 4, 5, 6, 38], "order": [3, 4, 5, 6, 7, 11, 12, 18, 19, 20, 21, 22, 25, 28, 29, 34, 38], "go": [3, 4, 5, 6, 7, 9, 11, 12, 13, 18, 19, 20, 22, 23, 25, 27, 28, 29, 37, 38], "http": [3, 4, 9, 11, 12, 15, 18, 19, 20, 21, 22, 23, 26, 34, 38], "www": [3, 18, 19, 38], "com": [3, 4, 9, 12, 18, 19, 23, 35, 38], "product": [3, 26], "individu": [3, 28, 29], "click": [3, 4, 5, 6, 7, 9, 11, 12, 13, 15, 19, 20, 21, 23, 25, 35, 37, 38], "when": [3, 4, 7, 9, 11, 12, 15, 16, 19, 20, 23, 25, 27, 28, 29, 30, 31, 32, 33, 35], "ha": [3, 4, 5, 6, 7, 11, 12, 15, 16, 20, 23, 27, 28, 29, 30, 31, 32, 34, 35, 38], "follow": [3, 4, 5, 6, 7, 9, 11, 12, 13, 15, 18, 19, 20, 21, 22, 23, 25, 27, 32, 34, 35, 37, 38], "next": [3, 5, 6, 9, 11, 12, 13, 15, 18, 19, 25, 28, 29, 30, 31, 35], "agre": [3, 9], "now": [3, 4, 5, 6, 7, 9, 10, 11, 12, 13, 15, 16, 27, 28, 29, 30, 31, 32, 33, 34, 35, 37, 38], "choic": [3, 4, 5, 7, 27, 32], "whether": [3, 38], "me": [3, 9, 10, 12, 14, 16, 20, 23, 27, 30, 31, 32], "requir": [3, 7, 9, 12, 21, 23, 34, 38], "administr": [3, 9, 25], "privileg": [3, 25], "caus": 3, "troubl": 3, "same": [3, 5, 6, 7, 11, 12, 15, 27, 28, 29, 30, 31, 32, 35, 37, 38], "too": [3, 7, 9, 11, 13, 26, 27, 28, 29, 37], "default": [3, 4, 6, 7, 9, 12, 20, 21, 25, 28, 29, 34, 37, 38], "locat": [3, 4, 6, 7, 9, 12, 19, 20, 37], "ask": [3, 9, 12, 15, 20, 25, 30, 31, 37, 38], "add": [3, 4, 5, 6, 7, 9, 11, 12, 13, 28, 29, 30, 31, 38], "anaconda3": [3, 6, 30], "path": [3, 4, 6, 7, 9, 11, 12, 25, 35, 37], "variabl": [3, 7, 11, 12, 13, 18, 19, 25, 27, 28, 29, 32, 34], "below": [3, 5, 7, 10, 11, 12, 13, 15, 16, 18, 19, 27, 28, 29, 32, 33, 37, 38], "until": [3, 4, 5, 21, 30, 31, 32, 38], "arriv": [3, 9], "box": [3, 6, 7, 12, 13, 38], "what": [3, 4, 5, 7, 9, 11, 14, 20, 26, 27, 28, 29, 30, 31, 32, 33, 37], "anywai": 3, "exit": [3, 9], "although": [3, 4, 11, 12, 14], "provid": [3, 4, 6, 9, 11, 12, 13, 15, 18, 19, 20, 23, 25, 28, 29, 32, 34, 35, 37, 38], "rather": [3, 4, 11, 30, 31, 37], "command": [3, 4, 5, 6, 7, 9, 11, 12, 15, 21, 22, 23, 25, 27, 28, 29, 32, 34, 38], "line": [3, 4, 5, 6, 7, 9, 11, 12, 15, 21, 22, 25, 27, 28, 29, 30, 31, 32, 38], "henc": [3, 4, 7], "stick": [3, 5, 32], "rest": [3, 28, 29], "concept": [3, 5, 14, 30, 31, 32], "open": [3, 4, 5, 6, 7, 9, 11, 12, 13, 15, 18, 24, 25, 27, 34, 35], "prompt": [3, 5, 6, 9, 12], "simpli": [3, 6, 7, 12, 14], "hit": [3, 9, 11, 12, 20, 23, 25], "button": [3, 5, 6, 7, 9, 11, 12, 13, 15, 20, 25, 27, 34, 35, 37, 38], "type": [3, 5, 6, 7, 9, 11, 12, 13, 15, 18, 19, 20, 32, 34, 38], "cmd": [3, 9, 13, 27, 34], "spawn": [3, 37, 38], "launchpad": 3, "icon": [3, 9], "dock": [3, 12], "termin": [3, 7, 9, 12, 34, 35], "search": [3, 4, 6, 9, 19, 25, 27, 28, 29], "field": [3, 11, 12, 13, 14, 16, 18, 19, 20, 26, 38], "linux": [3, 22, 38], "typic": [3, 4, 7, 12, 18, 19, 23, 38], "applic": [3, 5, 6, 15, 18, 19, 34, 38], "list": [3, 4, 6, 12, 13, 21, 30, 31, 32, 37, 38], "hand": [3, 7, 25], "side": [3, 11, 12, 13, 15, 20, 28, 29, 35], "panel": [3, 9, 15], "activ": [3, 4, 5, 6, 9, 12, 13, 15, 18, 19, 23, 25, 27, 28, 29, 35, 37], "which": [3, 4, 5, 6, 7, 9, 10, 11, 12, 13, 15, 18, 19, 20, 21, 22, 23, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 37, 38], "prefix": [3, 9], "ani": [3, 6, 7, 9, 11, 12, 15, 26, 27, 28, 29, 30, 31, 32, 37, 38], "reason": [3, 5, 9, 11, 13, 37, 38], "did": [3, 7, 12, 13, 27, 36], "option": [3, 4, 5, 9, 11, 12, 13, 15, 25, 27, 28, 29, 37, 38], "abov": [3, 4, 5, 6, 7, 11, 15, 18, 19, 27, 28, 29, 30, 31, 32, 37, 38], "select": [3, 4, 6, 7, 11, 12, 13, 15, 19, 20, 32, 35, 37, 38], "similarli": [3, 6, 7, 11, 27, 32], "exist": [3, 4, 13, 25, 37, 38], "also": [3, 4, 5, 6, 7, 9, 11, 12, 13, 15, 16, 18, 19, 20, 21, 22, 23, 24, 25, 27, 28, 29, 30, 31, 32, 34, 35, 36], "directli": [3, 4, 5, 6, 7, 28, 29], "continu": [3, 11, 21, 22, 25, 36], "normal": [3, 13, 18, 19, 23, 27, 38], "strongli": [3, 38], "never": [3, 4, 9, 14, 28, 29], "happen": [3, 5, 9, 27, 28, 29, 37], "incompat": [3, 9, 27], "occur": [3, 9], "than": [3, 10, 11, 12, 13, 27, 28, 29, 30, 31, 32, 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b/stefan_hahmann/elephant_server_installation_windows/readme.html @@ -409,7 +409,10 @@

Contents

  • GPU Support for machines with Nvidia GPUs
    • -
  • Creating the Elephant Server
    • +
  • Creating the Elephant Server +
  • Starting the Elephant Server
  • Stopping the Elephant Server
  • Move Docker to another drive
    • @@ -510,6 +513,8 @@

    Creating the Elephant Server
    sudo make build
    +
    +

    Troubleshooting#

    If you get an error message that docker is not found, you can try to install docker inside WSL.

    sudo snap install docker
    @@ -526,6 +531,7 @@

    Creating the Elephant ServerDocker Hub for the Elephant server image.

    +

    Starting the Elephant Server#

    Make sure that Docker Desktop is running.

    @@ -645,7 +651,10 @@

    Move Docker to another driveGPU Support for machines with Nvidia GPUs -
  • Creating the Elephant Server
    • +
  • Creating the Elephant Server +
  • Starting the Elephant Server
  • Stopping the Elephant Server
  • Move Docker to another drive