From 086b1cb58a936efe745009b0431ff78e77b0a4be Mon Sep 17 00:00:00 2001
From: Benjamin Sanchez <bjsanchezb@gmail.com>
Date: Mon, 5 Oct 2020 11:50:41 +0200
Subject: [PATCH] test: bound SBO terms

---
 ModelFiles/dependencies.txt |  2 +-
 ModelFiles/xml/yeastGEM.xml | 10 +++++-----
 README.md                   |  2 +-
 3 files changed, 7 insertions(+), 7 deletions(-)

diff --git a/ModelFiles/dependencies.txt b/ModelFiles/dependencies.txt
index 88a13d64..8b7c5e2f 100644
--- a/ModelFiles/dependencies.txt
+++ b/ModelFiles/dependencies.txt
@@ -1,7 +1,7 @@
 MATLAB	9.7.0.1190202 (R2019b)
 libSBML	5.17.0
 RAVEN_toolbox	2.4.0
-COBRA_toolbox	commit 0303050
+COBRA_toolbox	commit 56f0e94
 SBML_level	3
 SBML_version	1
 fbc_version	2
diff --git a/ModelFiles/xml/yeastGEM.xml b/ModelFiles/xml/yeastGEM.xml
index 643e95f6..238bdbed 100644
--- a/ModelFiles/xml/yeastGEM.xml
+++ b/ModelFiles/xml/yeastGEM.xml
@@ -58840,11 +58840,11 @@
       </species>
     </listOfSpecies>
     <listOfParameters>
-      <parameter id="FB1N1000" value="-1000" constant="true"/>
-      <parameter id="FB2N1" value="-1" constant="true"/>
-      <parameter id="FB3N0" value="0" constant="true"/>
-      <parameter id="FB4N1" value="0.7" constant="true"/>
-      <parameter id="FB5N1000" value="1000" constant="true"/>
+      <parameter sboTerm="SBO:0000626" id="FB1N1000" value="-1000" constant="true"/>
+      <parameter sboTerm="SBO:0000625" id="FB2N1" value="-1" constant="true"/>
+      <parameter sboTerm="SBO:0000626" id="FB3N0" value="0" constant="true"/>
+      <parameter sboTerm="SBO:0000625" id="FB4N1" value="0.7" constant="true"/>
+      <parameter sboTerm="SBO:0000626" id="FB5N1000" value="1000" constant="true"/>
     </listOfParameters>
     <listOfReactions>
       <reaction metaid="r_0001" sboTerm="SBO:0000176" id="r_0001" name="(R)-lactate:ferricytochrome-c 2-oxidoreductase" reversible="false" fast="false" fbc:lowerFluxBound="FB3N0" fbc:upperFluxBound="FB5N1000">
diff --git a/README.md b/README.md
index 944feb33..328c37bf 100644
--- a/README.md
+++ b/README.md
@@ -10,7 +10,7 @@ This repository contains the current consensus genome-scale metabolic model of _
 
 **GEM Category:** species; **Utilisation:** experimental data reconstruction, multi-omics integrative analysis, _in silico_ strain design, model template; **Field:** metabolic-network reconstruction; **Type of Model:** reconstruction, curated; **Model Source:** YeastMetabolicNetwork; **Omic Source:** genomics, metabolomics; **Taxonomy:** _Saccharomyces cerevisiae_; **Metabolic System:** general metabolism; **Bioreactor**; **Strain:** S288C; **Condition:** aerobic, glucose-limited, defined media;
 
-* Last update: 2020-09-18
+* Last update: 2020-10-05
 
 * Main Model Descriptors: