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Core Scripts package

Contains submodule links to all smaller script packages within the Beatson Microbial Genomics group.

Current Modules

  • Dryad-SA
    Standalone version of Dryad, a phylogenetics pipeline.
  • binCrisp
    A CRISPR detection and visulisation tool
  • mapContigs
    Contig mapper and visualisation tool
  • merge-genbank
    Merges seperate GenBank records
  • seqhandler
    SeqHandler provides low level operations on sequence files (FASTA, GenBank or EMBL files).
  • wgsfetch
    Retrieves genomes from WGS database given a particular search term.