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Differences between function "get_velocity_files" and "kb ref" command #17

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skpalan opened this issue Oct 12, 2022 · 0 comments
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@skpalan
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skpalan commented Oct 12, 2022

Hi, thanks for developing such a fantistic tool! I am new to kallito|bustool and currently trying to perform RNA velocity analysis on some spatial transcriptomic data. I noticed that there are two ways to build the reference index, which are either through the get_velocity_files function from BUSpaRse, or using kb ref.

However, what confuses me is there is a unique parameter L for get_velocity_files and it does not exist in the kb ref command. So what is the differences between using vs not using this parameter?

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