azure-pipelines.yml

# The file template originates from the instructions: https://github.com/InsightSoftwareConsortium/ITKModuleTemplate/README.md
variables:
  ITKGitTag: v5.1rc02       #Used for choosing branch of ITK to checkout
  ITKPythonGitTag: v5.1rc02 #Used to identify the release name for the cached python build environmeent ITKPythonBuilds-linux.tar.zst
  CMakeBuildType: Release

trigger:
  batch: true
  branches:
    include:
    - master
#    - release*

jobs:

- job: 'Test'
  displayName: "Build and test"
  timeoutInMinutes: 0
  cancelTimeoutInMinutes: 300

  strategy:
    matrix:
#     Linux1604:
#       imageName: 'ubuntu-16.04'
#       cCompiler: gcc
#       cxxCompiler: g++
#       compilerInitialization: ''
     Linux1804:
       imageName: 'ubuntu-18.04'
       cCompiler: gcc
       cxxCompiler: g++
       compilerInitialization: ''
       #     macOS1015:
       #       imageName: 'macos-10.15'
       #       cCompiler: clang
       #       cxxCompiler: clang++
       #       compilerInitialization: ''
#     macOS1014:
#       imageName: 'macos-10.14'
#       cCompiler: clang
#       cxxCompiler: clang++
#       compilerInitialization: ''
#     Windows2017:
#       imageName: 'vs2017-win2016'
#       cCompiler: cl.exe
#       cxxCompiler: cl.exe
#       compilerInitialization: 'call "C:\Program Files (x86)\Microsoft Visual Studio\2017\Enterprise\VC\Auxiliary\Build\vcvars64.bat"'
#     Windows2019:
#       imageName: 'windows-2019'
#       cCompiler: cl.exe
#       cxxCompiler: cl.exe
#       compilerInitialization: 'call "C:\Program Files (x86)\Microsoft Visual Studio\2019\Enterprise\VC\Auxiliary\Build\vcvars64.bat"'

  pool:
    vmImage: $(imageName)

  steps:
  - bash: |
      set -x
      if [ -n "$(System.PullRequest.SourceCommitId)" ]; then
        git checkout $(System.PullRequest.SourceCommitId)
      fi
    displayName: 'Checkout pull request HEAD'

  - task: UsePythonVersion@0
    inputs:
      versionSpec: '3.7'
      architecture: 'x64'

  - script: |
      python -m pip install --upgrade pip
      python -m pip install --upgrade setuptools
      python -m pip install scikit-ci-addons
      python -m pip install ninja
    displayName: 'Install build dependencies'

  - bash: |
      cat > dashboard.cmake << EOF
      set(CTEST_SITE "Azure.\$ENV{AGENT_MACHINENAME}")
      file(TO_CMAKE_PATH "\$ENV{AGENT_BUILDDIRECTORY}" CTEST_DASHBOARD_ROOT)
      file(TO_CMAKE_PATH "\$ENV{BUILD_SOURCESDIRECTORY}" CTEST_SOURCE_DIRECTORY)
      file(TO_CMAKE_PATH "\$ENV{AGENT_BUILDDIRECTORY}/build" CTEST_BINARY_DIRECTORY)
      set(dashboard_source_name "$(Build.Repository.Name)")
      if(DEFINED ENV{SYSTEM_PULLREQUEST_SOURCEBRANCH})
        set(branch "-\$ENV{SYSTEM_PULLREQUEST_SOURCEBRANCH}")
        set(dashboard_model "Experimental")
      elseif(ENV{BUILD_SOURCEBRANCHNAME} STREQUAL "master")
        set(branch "-master")
        set(dashboard_model "Continuous")
      else()
        set(branch "-\$ENV{BUILD_SOURCEBRANCHNAME}")
        set(dashboard_model "Experimental")
      endif()
      if(DEFINED ENV{SYSTEM_PULLREQUEST_PULLREQUESTNUMBER})
        set(pr "-PR\$ENV{SYSTEM_PULLREQUEST_PULLREQUESTNUMBER}")
      else()
        set(pr "")
      endif()
      set(CTEST_BUILD_NAME "$(Build.Repository.Name)-$(Agent.OS)-Build$(Build.BuildId)\${pr}\${branch}")
      set(CTEST_UPDATE_VERSION_ONLY 1)
      set(CTEST_TEST_ARGS \${CTEST_TEST_ARGS} PARALLEL_LEVEL \${PARALLEL_LEVEL})
      set(CTEST_BUILD_CONFIGURATION "Release")
      set(CTEST_CMAKE_GENERATOR "Ninja")
      set(CTEST_CUSTOM_WARNING_EXCEPTION
        \${CTEST_CUSTOM_WARNING_EXCEPTION}
        # macOS Azure Pipelines
        "ld: warning: text-based stub file"
        )

      set(PARALLEL_LEVEL 2)
      set(CTEST_TEST_ARGS ${CTEST_TEST_ARGS} PARALLEL_LEVEL ${PARALLEL_LEVEL})

      set(dashboard_no_clean 1)
      set(ENV{CC} $(cCompiler))
      set(ENV{CXX} $(cxxCompiler))
      set(dashboard_cache "
          BUILD_SHARED_LIBS:BOOL=OFF
          BUILD_EXAMPLES:BOOL=ON
          BRAINSTools_BUILD_DICOM_SUPPORT:BOOL=OFF
          USE_DWIConvert:BOOL=OFF
          USE_ANTS:BOOL=OFF
          BRAINSTools_USE_CTKAPPLAUNCHER:BOOL=OFF
          BRAINSTools_USE_QT:BOOL=OFF
          USE_BRAINSDWICleanup:BOOL=OFF
          USE_AutoWorkup:BOOL=OFF
          USE_BRAINSInitializedControlPoints:BOOL=OFF
          USE_BRAINSLabelStats:BOOL=OFF
          USE_BRAINSSnapShotWriter:BOOL=OFF
          USE_BRAINSSuperResolution:BOOL=OFF
          USE_ReferenceAtlas:BOOL=OFF
          BRAINSTools_REQUIRES_VTK:BOOL=OFF
      ")
      string(TIMESTAMP build_date "%Y-%m-%d")
      message("CDash Build Identifier: \${build_date} \${CTEST_BUILD_NAME}")
      message("CTEST_SITE = \${CTEST_SITE}")
      include(\${CTEST_SCRIPT_DIRECTORY}/.azure_BRAINSTools_common.cmake)
      EOF

      cat dashboard.cmake
    displayName: 'Configure CTest script'

  - script: |
      $(compilerInitialization)
      git clone -b dashboard --single-branch https://github.com/BRAINSia/BRAINSTools.git BRAINSTools-dashboard

      sudo pip3 install ninja

      c++ --version
      cmake --version

      export BUILD_EXAMPLES=OFF
      export CTEST_BUILD_CONFIGURATION=MinSizeRel
      ctest -j 2 -VV -S BRAINSTools-dashboard/azure_dashboard.cmake
      ctest -j 2 -VV -S dashboard.cmake
      displayName: Build and Test
      workingDirectory: $(Agent.BuildDirectory)
    displayName: 'Build and test'

  - script: |
      sudo pip3 install --upgrade pip
      sudo pip3 install --upgrade setuptools
      sudo pip3 install scikit-ci-addons
      ci_addons ctest_junit_formatter $(Agent.BuildDirectory)/build > $(Agent.BuildDirectory)/JUnitTestResults.xml
    condition: succeededOrFailed()
    displayName: 'Format CTest output in JUnit format'

  - task: PublishTestResults@2
    inputs:
      testResultsFiles: "$(Agent.BuildDirectory)/JUnitTestResults.xml"
      testRunTitle: 'CTest $(Agent.OS)'
    condition: succeededOrFailed()
    displayName: 'Publish test results'