how_to_install_smrtlink_tools.txt

How to install smrtlink only tools:

1. Download smrt link v11.0 from PacBio website (https://www.pacb.com/support/software-downloads/) 
     Introduction documents can alo be download from : 
         1) SMRT Link software installation (https://www.pacb.com/wp-content/uploads/SMRT_Link_Installation_v11.0.pdf)  
         2) SMRT Tools reference guide (https://www.pacb.com/wp-content/uploads/SMRT_Tools_Reference_Guide_v11.0.pdf)

2. Unzip and Install the software to your location:
                  ./smrtlink_11.0.0.146107.run --rootdir ./smrtlink_11 --smrttools-only

3. make sure the command "bam2fastq" working in command line.