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Data integration #3

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xy-chen16 opened this issue Mar 7, 2022 · 1 comment
Open

Data integration #3

xy-chen16 opened this issue Mar 7, 2022 · 1 comment

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@xy-chen16
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Hi, BAVARIA is a very interesting tool. But I have some confusions when I reproduce results of integrating cells from 10X Genomics and Cusanovich 2018 datasets. I tried to use and fix your code, but it didn't work well.
Could you please share your codes about this experiment?
Thanks!
@xy-chen16
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Apart from that, I find there is no cell type label in the 10X Genomics dataset (https://support.10xgenomics.com/single-cell-atac/datasets/1.2.0/atac_v1_adult_brain_fresh_5k). Could you please provide the label files of this dataset?

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