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I have encountered rare cases where a run appears to fail due to running out of memory during the kraken process. It appears to be a consistent error code of 137.
For the FluViewer_nf pipeline, we temporarily implemented the following retry mechanism for a memory-heavy process. I was thinking something similar could be applicable here for kraken:
I have encountered rare cases where a run appears to fail due to running out of memory during the
kraken
process. It appears to be a consistent error code of 137.For the FluViewer_nf pipeline, we temporarily implemented the following retry mechanism for a memory-heavy process. I was thinking something similar could be applicable here for kraken:
This pattern is also referenced here: https://seqera.io/blog/error-recovery-and-automatic-resources-management/
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