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Based on discussions last week, the group seems to prefer the notion of having fixed Nextclade dataset versions in favour of the nextclade dataset get that was implemented for clade calling.
Here are some ideas for changes:
remove the nextclade dataset get command and stick with a simple error message if the dataset path is not provided
change the metadata.json under the Nextclade dataset path to have a "version" field matching those listed by nextclade (i.e. 2024-07-03--08-29-55Z = latest flu_h1n1 version)
add provenance tracking (grep "version" ${dataset}/metadata.json | cut -d'"' -f4) to parse this version out of the metadata.json
The text was updated successfully, but these errors were encountered:
Based on discussions last week, the group seems to prefer the notion of having fixed Nextclade dataset versions in favour of the
nextclade dataset get
that was implemented for clade calling.Here are some ideas for changes:
nextclade dataset get
command and stick with a simple error message if the dataset path is not providedmetadata.json
under the Nextclade dataset path to have a "version" field matching those listed bynextclade
(i.e.2024-07-03--08-29-55Z
= latest flu_h1n1 version)grep "version" ${dataset}/metadata.json | cut -d'"' -f4
) to parse this version out of themetadata.json
The text was updated successfully, but these errors were encountered: