Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Jump to bottom

Finalize output structure/format #7

Open
dfornika opened this issue Aug 25, 2020 · 1 comment
Open

Finalize output structure/format #7

dfornika opened this issue Aug 25, 2020 · 1 comment
Assignees
@dfornika

Comments

@dfornika
Copy link
Member

What should the output directory structure be?

How should the qc.csv report be formatted?
@dfornika dfornika self-assigned this Aug 26, 2020
@dfornika
Copy link
Member Author

Mandatory outputs are:

  • A pair of de-hosted .fastq.gz files for each sample
  • A qc.csv file that summarizes tallies of host reads and pathogen reads for each sample

@dfornika dfornika mentioned this issue Sep 24, 2020
Merged
@dfornika dfornika mentioned this issue Oct 29, 2020
Closed
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Assignees

@dfornika dfornika

Labels
None yet
Projects
None yet
Milestone
No milestone
Development

No branches or pull requests
1 participant
@dfornika