diff --git a/custom-words.txt b/custom-words.txt index b7c7bd12e7a8..42aece42f289 100644 --- a/custom-words.txt +++ b/custom-words.txt @@ -3977,3 +3977,7 @@ protobuf proto msvideo SOQL +retroperitoneal +codeable +telehealth +loinc \ No newline at end of file diff --git a/specification/ai/HealthInsights/HealthInsights.Common/model.common.fhir.elements.tsp b/specification/ai/HealthInsights/HealthInsights.Common/model.common.fhir.elements.tsp new file mode 100644 index 000000000000..52b984dde70f --- /dev/null +++ b/specification/ai/HealthInsights/HealthInsights.Common/model.common.fhir.elements.tsp @@ -0,0 +1,388 @@ +using TypeSpec.Rest; +namespace Fhir.R4; + +alias markdown = string; + +@pattern("([0-9]([0-9]([0-9][1-9]|[1-9]0)|[1-9]00)|[1-9]000)(-(0[1-9]|1[0-2])(-(0[1-9]|[1-2][0-9]|3[0-1]))?)?") +scalar fhirDate extends string; + +@pattern("([0-9]([0-9]([0-9][1-9]|[1-9]0)|[1-9]00)|[1-9]000)(-(0[1-9]|1[0-2])(-(0[1-9]|[1-2][0-9]|3[0-1])(T([01][0-9]|2[0-3]):[0-5][0-9]:([0-5][0-9]|60)(\\.[0-9]{1,9})?)?)?(Z|(\\+|-)((0[0-9]|1[0-3]):[0-5][0-9]|14:00)?)?)?") +scalar fhirDateTime extends string; + +@pattern("([0-9]([0-9]([0-9][1-9]|[1-9]0)|[1-9]00)|[1-9]000)-(0[1-9]|1[0-2])-(0[1-9]|[1-2][0-9]|3[0-1])T([01][0-9]|2[0-3]):[0-5][0-9]:([0-5][0-9]|60)(\\.[0-9]{1,9})?(Z|(\\+|-)((0[0-9]|1[0-3]):[0-5][0-9]|14:00))") +scalar fhirInstant extends string; + +scalar fhirUri extends string; + +alias value_x = { + @doc("Value as Quantity") + valueQuantity?: Quantity; + + @doc("Value as CodeableConcept") + valueCodeableConcept?: CodeableConcept; + + @doc("Value as string") + valueString?: string; + + @doc("Value as boolean") + valueBoolean?: boolean; + + @doc("Value as integer") + valueInteger?: int32; + + @doc("Value as Range.") + valueRange?: Range; + + @doc("Value as Ratio.") + valueRatio?: Ratio; + + @doc("Value as SampledData.") + valueSampledData?: SampledData; + + @doc("Value as time (hh:mm:ss)") + valueTime?: plainTime; + + @doc("Value as dateTime.") + valueDateTime?: fhirDateTime; + + @doc("Value as Period.") + valuePeriod?: Period; + + @doc("Value as reference.") + valueReference?: Reference; +}; + +#suppress "@azure-tools/typespec-azure-core/composition-over-inheritance" "Keep is much as close to FHIR Spec" +@doc(""" +Base for all elements +Based on [FHIR Element](https://www.hl7.org/fhir/datatypes.html#Element) +""") +model Extension extends Element { + @doc("Source of the definition for the extension code - a logical name or a URL.") + url: fhirUri; + + ...value_x; +} + +@doc("FHIR extendible element") +model Extendible { + @doc("Additional Content defined by implementations") + extension?: Extension[]; +} + +@doc(""" +The base definition for all elements contained inside a resource. +Based on [FHIR Element](https://www.hl7.org/fhir/R4/element.html) +""") +model Element { + @doc("Unique id for inter-element referencing") + id?: string; + + #suppress "@azure-tools/typespec-azure-core/property-name-conflict" "must keep the name 'extension' for compatibility with FHIR" + @doc("Additional Content defined by implementations") + extension?: Extension[]; +} + +#suppress "@azure-tools/typespec-azure-core/composition-over-inheritance" "Keep is much as close to FHIR Spec" +@doc(""" +A Coding is a representation of a defined concept using a symbol from a defined "code system". +Based on [FHIR Coding](https://www.hl7.org/fhir/R4/datatypes.html#Coding) +""") +model Coding extends Element { + @doc("Identity of the terminology system") + system?: fhirUri; + + @doc("Version of the system - if relevant") + version?: string; + + @doc("Symbol in syntax defined by the system") + code?: string; + + @doc("Representation defined by the system") + display?: string; +} + +#suppress "@azure-tools/typespec-azure-core/composition-over-inheritance" "Keep is much as close to FHIR Spec" +@doc(""" +Concept - reference to a terminology or just text +Based on [FHIR CodeableConcept](https://www.hl7.org/fhir/R4/datatypes.html#CodeableConcept) +""") +model CodeableConcept extends Element { + @doc("Code defined by a terminology system") + coding?: Array; + + @doc("Plain text representation of the concept") + text?: string; +} + +alias canonical = fhirUri; + +@doc(""" +Metadata about a resource +Based on [FHIR Meta](https://www.hl7.org/fhir/R4/resource.html#Meta) +""") +model Meta { + @doc("The version specific identifier, as it appears in the version portion of the URL. This value changes when the resource is created, updated, or deleted.") + versionId?: string; + + @doc("When the resource last changed - e.g. when the version changed.") + lastUpdated?: fhirInstant; + + @doc("A uri that identifies the source system of the resource. This provides a minimal amount of Provenance information that can be used to track or differentiate the source of information in the resource. The source may identify another FHIR server, document, message, database, etc.") + source?: fhirUri; + + @doc("A list of profiles (references to [StructureDefinition](https://www.hl7.org/fhir/structuredefinition.html) resources) that this resource claims to conform to. The URL is a reference to [StructureDefinition.url](https://www.hl7.org/fhir/structuredefinition-definitions.html#StructureDefinition.url).") + profile?: Array; + + @doc("Security labels applied to this resource. These tags connect specific resources to the overall security policy and infrastructure.") + security?: Array; + + @doc("Tags applied to this resource. Tags are intended to be used to identify and relate resources to process and workflow, and applications are not required to consider the tags when interpreting the meaning of a resource.") + tag?: Array; +} + +alias xhtml = string; +#suppress "@azure-tools/typespec-azure-core/composition-over-inheritance" "Keep is much as close to FHIR Spec" +@doc(""" +Any resource that is a [DomainResource](https://www.hl7.org/fhir/domainresource.html) may include a human-readable narrative that contains a summary of the resource and may be used to represent the content of the resource to a human. +Based on [FHIR Narrative](https://www.hl7.org/fhir/R4/narrative.html#Narrative) +""") +model Narrative extends Element { + @doc("generated, extensions, additional, empty") + status: string; + + @doc("xhtml") + div: xhtml; +} + +#suppress "@azure-tools/typespec-azure-core/composition-over-inheritance" "Keep is much as close to FHIR Spec" +@doc(""" +A reference from one resource to another +Based on [FHIR Reference](https://www.hl7.org/fhir/R4/references.html) +""") +model Reference extends Element { + #suppress "@azure-tools/typespec-azure-core/property-name-conflict" "must keep the name 'reference' for compatibility with FHIR" + @doc("Literal reference, Relative, internal or absolute URL") + reference?: string; + + @doc("Type the reference refers to (e.g. \"Patient\")") + type?: fhirUri; + + @doc("Logical reference, when literal reference is not known") + identifier?: Identifier; + + @doc("Text alternative for the resource") + display?: string; +} + +#suppress "@azure-tools/typespec-azure-core/composition-over-inheritance" "Keep is much as close to FHIR Spec" +@doc(""" +An identifier intended for computation +Based on [FHIR Identifier](https://www.hl7.org/fhir/R4/identifier.html) +""") +model Identifier extends Element { + @doc("usual | official | temp | secondary | old (If known)") + use?: string; + + @doc("Description of identifier") + type?: CodeableConcept; + + @doc("The namespace for the identifier value") + system?: fhirUri; + + @doc("The value that is unique") + value?: string; + + @doc("Time period when id is/was valid for use") + period?: Period; + + @doc("Organization that issued id (may be just text)") + assigner?: Reference; +} + +#suppress "@azure-tools/typespec-azure-core/composition-over-inheritance" "Keep is much as close to FHIR Spec" +@doc(""" +A time period defined by a start and end date and optionally time +Based on [FHIR Period](https://www.hl7.org/fhir/R4/datatypes.html#Period) +""") +model Period extends Element { + @doc("Starting time with inclusive boundary") + start?: fhirDateTime; + + @doc("End time with inclusive boundary, if not ongoing") + end?: fhirDateTime; +} + +#suppress "@azure-tools/typespec-azure-core/composition-over-inheritance" "Keep is much as close to FHIR Spec" +@doc(""" +A measured or measurable amount +Based on [FHIR Quantity](https://www.hl7.org/fhir/R4/datatypes.html#Quantity) +""") +model Quantity extends Element { + @doc("Numerical value (with implicit precision)") + value?: float64; + + @doc("< | <= | >= | > - how to understand the value") + comparator?: string; + + @doc("Unit representation") + unit?: string; + + @doc("System that defines coded unit form") + system?: fhirUri; + + @doc("Coded form of the unit") + code?: string; +} + +#suppress "@azure-tools/typespec-azure-core/composition-over-inheritance" "Keep is much as close to FHIR Spec" +@doc(""" +A set of ordered Quantities defined by a low and high limit +Based on [FHIR Range](https://www.hl7.org/fhir/R4/datatypes.html#Range) +""") +model Range extends Element { + @doc("Low limit") + low?: Quantity; + + @doc("High limit") + high?: Quantity; +} + +#suppress "@azure-tools/typespec-azure-core/composition-over-inheritance" "Keep is much as close to FHIR Spec" +@doc(""" +A ratio of two Quantity values - a numerator and a denominator +Based on [FHIR Ratio](https://www.hl7.org/fhir/R4/datatypes.html#Ratio) +""") +model Ratio extends Element { + @doc("Numerator value") + numerator?: Quantity; + + @doc("Denominator value") + denominator?: Quantity; +} + +#suppress "@azure-tools/typespec-azure-core/composition-over-inheritance" "Keep is much as close to FHIR Spec" +@doc(""" +A text note which also contains information about who made the statement and when +Based on [FHIR Annotation](https://www.hl7.org/fhir/R4/datatypes.html#Annotation) +""") +model Annotation extends Element { + @doc("Individual responsible for the annotation") + authorString?: string; + + @doc("When the annotation was made") + time?: fhirDateTime; + + @doc("The annotation - text content (as markdown)") + text: string; +} + +#suppress "@azure-tools/typespec-azure-core/composition-over-inheritance" "Keep is much as close to FHIR Spec" +@doc(""" +A series of measurements taken by a device +Based on [FHIR SampledData](https://www.hl7.org/fhir/R4/datatypes.html#SampledData) +""") +model SampledData extends Element { + @doc("Zero value and units") + origin: Quantity; + + @doc("Number of milliseconds between samples") + period: float64; + + @doc("Multiply data by this before adding to origin") + factor?: float64; + + @doc("Lower limit of detection") + lowerLimit?: float64; + + @doc("Upper limit of detection") + upperLimit?: float64; + + @doc("Number of sample points at each time point") + @minValue(1) + dimensions: int32; + + @doc("Decimal values with spaces, or \"E\" | \"U\" | \"L\"") + data?: string; +} + +#suppress "@azure-tools/typespec-azure-core/composition-over-inheritance" "Keep is much as close to FHIR Spec" +@doc(""" +Contact details (See: https://www.hl7.org/fhir/R4/metadatatypes.html#ContactDetail) +""") +model ContactDetail extends Element { + @doc("Name of an individual to contact") + name?: string; + + @doc("Contact details for individual or organization") + telecom?: Array; +} + +@doc(""" +Details for all kinds of technology mediated contact points for a person or organization, including telephone, email, etc. +See https://www.hl7.org/fhir/R4/datatypes.html#ContactPoint +""") +model ContactPoint { + @doc("phone | fax | email | pager | url | sms | other") + system?: ContactPointSystem; + + @doc("The actual contact point details") + value?: string; + + @doc("home | work | temp | old | mobile - purpose of this contact point") + use?: ContactPointUse; + + @doc("Specify preferred order of use (1 = highest)") + rank?: int32; + + @doc("Time period when the contact point was/is in use") + period?: Period; +} + +@doc(""" +Contact Point System +see https://www.hl7.org/fhir/R4/valueset-contact-point-system.html +""") +enum ContactPointSystem { + @doc("Phone") + Phone: "phone", + + @doc("Fax") + Fax: "fax", + + @doc("Email") + Email: "email", + + @doc("Pager") + Pager: "pager", + + @doc("Url") + Url: "url", + + @doc("Sms") + Sms: "sms", + + @doc("Other") + Other: "other", +} + +@doc(""" +Contact Point Use +See: http://hl7.org/fhir/ValueSet/contact-point-use +""") +enum ContactPointUse { + @doc("Home") + Home: "home", + + @doc("Work") + Work: "work", + + @doc("Temp") + Temp: "temp", + + @doc("Old") + Old: "old", + + @doc("Mobile") + Mobile: "mobile", +} diff --git a/specification/ai/HealthInsights/HealthInsights.Common/model.common.fhir.resources.tsp b/specification/ai/HealthInsights/HealthInsights.Common/model.common.fhir.resources.tsp new file mode 100644 index 000000000000..feb8561e2102 --- /dev/null +++ b/specification/ai/HealthInsights/HealthInsights.Common/model.common.fhir.resources.tsp @@ -0,0 +1,444 @@ +import "./model.common.fhir.elements.tsp"; + +using TypeSpec.Rest; + +namespace Fhir.R4; + +#suppress "@azure-tools/typespec-azure-core/bad-record-type" "model should have additionalProperties" +@doc(""" +Resource is the ancestor of DomainResource from which most resources are derived. Bundle, Parameters, and Binary extend Resource directly. +Based on [FHIR Resource](https://www.hl7.org/fhir/r4/resource.html +""") +model Resource is Record { + @doc("The type of resource") + resourceType: string; + + @doc("Resource Id") + id?: string; + + @doc("Metadata about the resource") + meta?: Meta; + + @doc("A set of rules under which this content was created") + implicitRules?: fhirUri; + + @doc("Language of the resource content") + language?: string; +} + +#suppress "@azure-tools/typespec-azure-core/bad-record-type" "model should have additionalProperties" +#suppress "@azure-tools/typespec-azure-core/composition-over-inheritance" "must extends Resource to be able use clientName in both Resource and DomainResource" +@doc(""" +A resource with narrative, extensions, and contained resources +Based on [FHIR DomainResource](https://www.hl7.org/fhir/domainresource.html) +""") +@discriminator("resourceType") +model DomainResource extends Resource { + @doc("Text summary of the resource, for human interpretation") + text?: Narrative; + + @doc("Contained, inline Resources") + contained?: Array; + + @doc("Additional Content defined by implementations") + extension?: Array; + + @doc("Extensions that cannot be ignored") + modifierExtension?: Array; +} + +#suppress "@azure-tools/typespec-azure-core/bad-record-type" "model should have additionalProperties" +@doc(""" +Detailed information about conditions, problems or diagnoses +Based on [FHIR Condition](https://www.hl7.org/fhir/R4/condition.html) +""") +model Condition extends DomainResource { + @doc("resourceType") + resourceType: "Condition"; + + @doc("External Ids for this condition") + identifier?: Array; + + @doc("active | recurrence | relapse | inactive | remission | resolved") + clinicalStatus?: CodeableConcept; + + @doc("unconfirmed | provisional | differential | confirmed | refuted | entered-in-error") + verificationStatus?: CodeableConcept; + + @doc("problem-list-item | encounter-diagnosis") + category?: Array; + + @doc("Subjective severity of condition") + severity?: CodeableConcept; + + @doc("Identification of the condition, problem or diagnosis") + code?: CodeableConcept; + + @doc("Anatomical location, if relevant") + bodySite?: Array; + + @doc("Encounter created as part of") + encounter?: Reference; + + @doc("Estimated or actual date, date-time, or age") + onsetDateTime?: fhirDateTime; + + @doc("Estimated or actual date, date-time, or age") + onsetAge?: Quantity; + + @doc("Estimated or actual date, date-time, or age") + onsetPeriod?: Period; + + @doc("Estimated or actual date, date-time, or age") + onsetRange?: Range; + + @doc("Estimated or actual date, date-time, or age") + onsetString?: string; + + @doc("When in resolution/remission") + abatementDateTime?: fhirDateTime; + + @doc("When in resolution/remission") + abatementAge?: Quantity; + + @doc("When in resolution/remission") + abatementPeriod?: Period; + + @doc("When in resolution/remission") + abatementRange?: Range; + + @doc("When in resolution/remission") + abatementString?: string; + + @doc("Date record was first recorded") + recordedDate?: fhirDateTime; + + @doc("stge/grade, usually assessed formally") + stage?: Array; + + @doc("Additional information about the Condition") + note?: Array; +} + +@doc(""" +Stage/grade, usually assessed formally +Based on [FHIR Condition.Stage](https://www.hl7.org/fhir/R4/condition.html) +""") +model ConditionStage { + @doc("Simple summary (disease specific)") + summary?: CodeableConcept; + + @doc("Kind of staging") + type?: CodeableConcept; +} + +#suppress "@azure-tools/typespec-azure-core/bad-record-type" "model should have additionalProperties" +@doc(""" +Detailed information about observations +Based on [FHIR Observation](https://www.hl7.org/fhir/R4/observation.html) +""") +model Observation extends DomainResource { + @doc("resourceType") + resourceType: "Observation"; + + @doc("Business Identifier for observation") + identifier?: Array; + + @doc("registered | preliminary | final | amended +") + status: ObservationStatusCodeType; + + @doc("Classification of type of observation") + category?: Array; + + @doc("Type of observation (code / type)") + code: CodeableConcept; + + @doc("Who and/or what the observation is about") + subject?: Reference; + + @doc("Healthcare event during which this observation is made") + encounter?: Reference; + + @doc("Clinically relevant time/time-period for observation") + effectiveDateTime?: fhirDateTime; + + @doc("Clinically relevant time/time-period for observation") + effectivePeriod?: Period; + + @doc("Clinically relevant time/time-period for observation") + effectiveInstant?: fhirInstant; + + @doc("Date/Time this version was made available") + issued?: fhirInstant; + + @doc("Actual result") + valueQuantity?: Quantity; + + @doc("Actual result") + valueCodeableConcept?: CodeableConcept; + + @doc("Actual result") + valueString?: string; + + @doc("Actual result") + valueBoolean?: boolean; + + @doc("Actual result") + valueInteger?: int32; + + @doc("Actual result") + valueRange?: Range; + + @doc("Actual result") + valueRatio?: Ratio; + + @doc("Actual result") + valueSampledData?: SampledData; + + @doc("Actual result") + valueTime?: plainTime; + + @doc("Actual result") + valueDateTime?: fhirDateTime; + + @doc("Actual result") + valuePeriod?: Period; + + @doc("Why the result is missing") + dataAbsentReason?: CodeableConcept; + + @doc("High, low, normal, etc.") + interpretation?: Array; + + @doc("Comments about the observation") + note?: Array; + + @doc("Observed body part") + bodySite?: CodeableConcept; + + @doc("How it was done") + method?: CodeableConcept; + + @doc("Provides guide for interpretation") + referenceRange?: Array; + + @doc("Related resource that belongs to the Observation group") + hasMember?: Array; + + @doc("Related measurements the observation is made from") + derivedFrom?: Array; + + @doc("Component results") + component?: Array; +} + +@doc(""" +Provides guide for interpretation of component result +Based on [FHIR Observation.referenceRange](https://www.hl7.org/fhir/R4/observation.html) +""") +model ObservationReferenceRange { + @doc("Low Range, if relevant") + low?: Quantity; + + @doc("High Range, if relevant") + high?: Quantity; + + @doc("Reference range qualifier") + type?: CodeableConcept; + + @doc("Reference range population") + appliesTo?: Array; + + @doc("Applicable age range, if relevant") + age?: Range; + + @doc("Text based reference range in an observation") + text?: string; +} + +#suppress "@azure-tools/typespec-azure-core/composition-over-inheritance" "Keep is much as close to FHIR Spec" +@doc(""" +Component results +Based on [FHIR Observation.component](https://www.hl7.org/fhir/R4/observation.html) +""") +model ObservationComponent extends Element { + @doc("Type of component observation (code / type)") + code: CodeableConcept; + + ...value_x; + + @doc("Why the component result is missing") + dataAbsentReason?: CodeableConcept; + + @doc("High, low, normal, etc.") + interpretation?: Array; + + @doc("Provides guide for interpretation of component result") + referenceRange?: Array; +} + +@doc(""" +Observation Status +Based on [FHIR ObservationStatus](https://www.hl7.org/fhir/R4/valueset-observation-status.html) +""") +enum ObservationStatusCodeType { + @doc("The existence of the observation is registered, but there is no result yet available.") + Registered: "registered", + + @doc("This is an initial or interim observation: data may be incomplete or unverified.") + Preliminary: "preliminary", + + @doc("The observation is complete and verified by an authorized person.") + Final: "final", + + @doc("Subsequent to being Final, the observation has been modified subsequent. This includes updates/new information and corrections.") + Amended: "amended", + + @doc("Subsequent to being Final, the observation has been modified to correct an error in the test result.") + Corrected: "corrected", + + @doc("The observation is unavailable because the measurement was not started or not completed (also sometimes called \"aborted\").") + Cancelled: "cancelled", + + @doc("The observation has been withdrawn following previous final release.") + EnteredInError: "entered-in-error", + + @doc("The observation status is unknown. Note that \"unknown\" is a value of last resort and every attempt should be made to provide a meaningful value other than \"unknown\".") + Unknown: "unknown", +} + +#suppress "@azure-tools/typespec-azure-core/bad-record-type" "model should have additionalProperties" +@doc(""" +Detailed information about Research Study +Based on [FHIR ResearchStudy](https://www.hl7.org/fhir/R4/researchstudy.html) +""") +model ResearchStudy extends DomainResource { + @doc("resourceType") + resourceType: "ResearchStudy"; + + @doc("Business Identifier for study") + identifier?: Array; + + @doc("Name for this study") + title?: string; + + @doc("Steps followed in executing study") + protocol?: Array; + + @doc("Part of larger study") + partOf?: Array; + + @doc("active | administratively-completed | approved | closed-to-accrual | closed-to-accrual-and-intervention | completed | disapproved | in-review | temporarily-closed-to-accrual | temporarily-closed-to-accrual-and-intervention | withdrawn") + status: ResearchStudyStatusCodeType; + + @doc("treatment | prevention | diagnostic | supportive-care | screening | health-services-research | basic-science | device-feasibility") + primaryPurposeType?: CodeableConcept; + + @doc("n-a | early-phase-1 | phase-1 | phase-1-phase-2 | phase-2 | phase-2-phase-3 | phase-3 | phase-4") + phase?: CodeableConcept; + + @doc("Classifications for the study") + category?: Array; + + @doc("Drugs, devices, etc. under study") + focus?: Array; + + @doc("Condition being studied") + condition?: Array; + + @doc("Contact details for the study") + contact?: Array; + + @doc("Used to search for the study") + keyword?: Array; + + @doc("Geographic region(s) for study") + location?: Array; + + @doc("What this is study doing") + description?: markdown; + + @doc("Inclusion & exclusion criteria") + enrollment?: Array; + + @doc("When the study began and ended") + period?: Period; + + @doc("Organization that initiates and is legally responsible for the study") + sponsor?: Reference; + + @doc("Researcher who oversees multiple aspects of the study") + principalInvestigator?: Reference; + + @doc("Facility where study activities are conducted") + site?: Array; + + @doc("accrual-goal-met | closed-due-to-toxicity | closed-due-to-lack-of-study-progress | temporarily-closed-per-study-design") + reasonStopped?: CodeableConcept; + + @doc("Comments made about the study") + note?: Array; + + @doc("Defined path through the study for a subject") + arm?: Array; + + @doc("A goal for the study") + objective?: Array; +} + +alias ResearchStudyArm = { + @doc("Label for study arm") + name: string; + + @doc("Categorization of study arm") + type?: CodeableConcept; + + @doc("Short explanation of study path") + description?: string; +}; + +alias ResearchStudyObjective = { + @doc("Label for the objective") + name: string; + + @doc("primary | secondary | exploratory") + type?: CodeableConcept; +}; + +@doc(""" +https://www.hl7.org/fhir/R4/codesystem-research-study-status.html +""") +enum ResearchStudyStatusCodeType { + @doc("The study is open for accrual.") + Active: "active", + + @doc("Study is completed prematurely and will not resume; patients are no longer examined nor treated.") + AdministrativelyCompleted: "administratively-completed", + + @doc("Protocol is approved by the review board.") + Approved: "approved", + + @doc("Study is closed for accrual; patients can be examined and treated.") + ClosedToAccrual: "closed-to-accrual", + + @doc("The study is closed to accrual and intervention, i.e. the study is closed to enrollment, all study subjects have completed treatment or intervention but are still being followed according to the primary objective of the study.") + ClosedToAccrualAndIntervention: "closed-to-accrual-and-intervention", + + @doc("Study is closed to accrual and intervention, i.e. the study is closed to enrollment, all study subjects have completed treatment or intervention but are still being followed according to the primary objective of the study.") + Completed: "completed", + + @doc("Protocol was disapproved by the review board.") + Disapproved: "disapproved", + + @doc("Protocol is submitted to the review board for approval.") + InReview: "in-review", + + @doc("The study is temporarily closed to accrual; a pause in accrual while study is reviewed, but is expected to resume.") + TemporarilyClosedToAccrual: "temporarily-closed-to-accrual", + + @doc("Study is temporarily closed for accrual; can be potentially resumed in the future") + TemporarilyClosedToAccrualAndIntervention: "temporarily-closed-to-accrual-and-intervention", + + @doc("Protocol was withdrawn by the lead organization.") + Withdrawn: "withdrawn", +} diff --git a/specification/ai/HealthInsights/HealthInsights.Common/model.common.request.tsp b/specification/ai/HealthInsights/HealthInsights.Common/model.common.request.tsp index b9491b12d096..7272b4d8c57d 100644 --- a/specification/ai/HealthInsights/HealthInsights.Common/model.common.request.tsp +++ b/specification/ai/HealthInsights/HealthInsights.Common/model.common.request.tsp @@ -1,4 +1,6 @@ import "./model.common.shared.tsp"; +import "./model.common.fhir.elements.tsp"; +import "./model.common.fhir.resources.tsp"; using TypeSpec.Rest; @@ -30,8 +32,11 @@ Patient structured information, including demographics and known structured clin """) info?: PatientInfo; + @doc("Patient encounters/visits.") + encounters?: Array; + @doc("Patient unstructured clinical data, given as documents.") - data?: PatientDocument[]; + patientDocuments?: Array; } @doc("Patient structured information, including demographics and known structured clinical information.") @@ -43,7 +48,7 @@ model PatientInfo { birthDate?: plainDate; @doc("Known clinical information for the patient, structured.") - clinicalInfo?: ClinicalCodedElement[]; + clinicalInfo?: Array; } #suppress "@azure-tools/typespec-azure-core/documentation-required" "MUST fix in next update" @@ -69,11 +74,11 @@ enum ClinicalDocumentType { Consultation: "consultation", DischargeSummary: "dischargeSummary", HistoryAndPhysical: "historyAndPhysical", + RadiologyReport: "radiologyReport", Procedure: "procedure", Progress: "progress", - Imaging: "imaging", Laboratory: "laboratory", - Pathology: "pathology", + PathologyReport: "pathologyReport", } #suppress "@azure-tools/typespec-azure-core/documentation-required" "MUST fix in next update" @@ -83,7 +88,10 @@ In case the source type is 'inline', the content is given as a string (for insta In case the source type is 'reference', the content is given as a URI. """) enum DocumentContentSourceType { + @doc("The content is given as a string (for instance, text).") Inline: "inline", + + @doc("The content is given as a URI.") Reference: "reference", } @@ -105,10 +113,95 @@ model PatientDocument { @doc("The date and time when the document was created.") createdDateTime?: utcDateTime; + @doc("Document author(s)") + authors?: Array; + + @doc("specialty type the document") + specialtyType?: SpecialtyType; + + @doc("Administrative metadata for the document.") + administrativeMetadata?: DocumentAdministrativeMetadata; + @doc("The content of the patient document.") content: DocumentContent; } +@doc("Document administrative metadata") +model DocumentAdministrativeMetadata { + @doc("List of procedure information associated with the document.") + @minItems(1) + orderedProcedures?: Array; + + @doc("Reference to the encounter associated with the document.") + encounterId?: string; +} + +@doc("visit/encounter information") +model Encounter { + @doc("The id of the visit.") + id: string; + + @doc(""" + Time period of the visit. + In case of admission, use timePeriod.start to indicate the admission time and timePeriod.end to indicate the discharge time. + """) + period?: TimePeriod; + + @doc("The class of the encounter.") + class?: EncounterClass; +} + +@doc("Known values codes that can be used to indicate the class of encounter (TODO://Based on FHIR value set--http://....).") +enum EncounterClass { + @doc(""" + A patient encounter where a patient is admitted by a hospital or equivalent facility, assigned to a location where patients generally stay at least overnight and provided with room, board, and continuous nursing service. + """) + InPatient: "inpatient", + + @doc(""" + The term ambulatory usually implies that the patient has come to the location and is not assigned to a bed. Sometimes referred to as an outpatient encounter. + """) + Ambulatory: "ambulatory", + + @doc(""" + An encounter where the patient usually will start in different encounter, such as one in the emergency department but then transition to this type of encounter because they require a significant period of treatment and monitoring to determine whether or not their condition warrants an inpatient admission or discharge. + """) + Observation: "observation", + + @doc(""" + A patient encounter that takes place at a dedicated healthcare service delivery location where the patient receives immediate evaluation and treatment, provided until the patient can be discharged or responsibility for the patient's care is transferred elsewhere (for example, the patient could be admitted as an inpatient or transferred to another facility. + """) + Emergency: "emergency", + + @doc(""" + A patient encounter where the patient is not physically present for the encounter, such as in a telehealth encounter, phone call, or electronic communication. + """) + Virtual: "virtual", + + @doc(""" + Healthcare encounter that takes place in the residence of the patient or a designee + """) + HealthHome: "healthHome", +} + +@doc("Known values codes that can be used to indicate the type of the Specialty.") +enum SpecialtyType { + @doc("pathology") + Pathology: "pathology", + + @doc("radiology") + Radiology: "radiology", +} + +@doc("Document author") +model DocumentAuthor { + @doc("author id") + id?: string; + + @doc("Text representation of the full name") + fullName?: string; +} + @doc("The content of the patient document.") model DocumentContent { @doc(""" diff --git a/specification/ai/HealthInsights/HealthInsights.Common/model.common.response.tsp b/specification/ai/HealthInsights/HealthInsights.Common/model.common.response.tsp index a7d04f15ce02..6acc0d05d2b4 100644 --- a/specification/ai/HealthInsights/HealthInsights.Common/model.common.response.tsp +++ b/specification/ai/HealthInsights/HealthInsights.Common/model.common.response.tsp @@ -1,37 +1,50 @@ import "./model.common.shared.tsp"; +using Azure.Core; using TypeSpec.Rest; namespace AzureHealthInsights; -alias Response = { - #suppress "@azure-tools/typespec-azure-core/no-format" "This is an old spec" - @doc("A processing job identifier.") +/** + * Provides status details for long running operations. + * @template TStatusResult The type of the operation status result. + * @template TStatusError The type of the operation status error. If not provided, the default error is used. + */ +@doc("Provides status details for long running operations.") +model HealthInsightsOperationStatus< + TStatusResult = never, + TStatusError = Foundations.Error +> { + @key("operationId") + @doc("The unique ID of the operation.") @visibility("read") - @key - jobId: Azure.Core.uuid; + id: Azure.Core.uuid; + + @doc("The status of the operation") + @visibility("read") + @lroStatus + status: JobStatus; @doc("The date and time when the processing job was created.") @visibility("read") - createdDateTime: utcDateTime; + createdDateTime?: utcDateTime; @doc("The date and time when the processing job is set to expire.") @visibility("read") - expirationDateTime: utcDateTime; + expirationDateTime?: utcDateTime; @doc("The date and time when the processing job was last updated.") @visibility("read") - lastUpdateDateTime: utcDateTime; + lastUpdateDateTime?: utcDateTime; - @doc("The status of the processing job.") - @visibility("read") - status: JobStatus; - - @doc("An array of errors, if any errors occurred during the processing job.") - @visibility("read") - errors?: Azure.Core.Foundations.Error[]; -}; + @doc("Error object that describes the error when status is \"Failed\".") + error?: TStatusError; + @doc("The result of the operation.") + @lroResult + result?: TStatusResult; +} +////////////////// Inference ////////////////// @doc("An inference made by the model regarding a patient.") model Inference { @doc("The value of the inference, as relevant for the given inference type.") @@ -46,6 +59,20 @@ model Inference { confidenceScore?: float32; } +#suppress "@azure-tools/typespec-azure-core/documentation-required" "MUST fix in next version" +@doc("The status of the processing job.") +@lroStatus +enum JobStatus { + NotStarted: "notStarted", + Running: "running", + Succeeded: "succeeded", + Failed: "failed", + Canceled: "canceled", +} + +@doc("The version of the model used for inference, expressed as the model date.") +scalar ModelVersion extends string; + @doc("A piece of evidence from a clinical note (text document).") model ClinicalNoteEvidence { @doc("The identifier of the document containing the evidence.") @@ -79,24 +106,3 @@ system. @maxValue(1) importance?: float32; } - -@doc("A piece of evidence corresponding to a Trial Matcher inference.") -model TrialMatcherInferenceEvidence { - @doc("A piece of evidence from the eligibility criteria text of a clinical trial.") - eligibilityCriteriaEvidence?: string; - - ...InferenceEvidence; -} - -#suppress "@azure-tools/typespec-azure-core/documentation-required" "MUST fix in next version" -@doc("The status of the processing job.") -enum JobStatus { - NotStarted: "notStarted", - Running: "running", - Succeeded: "succeeded", - Failed: "failed", - PartiallyCompleted: "partiallyCompleted", -} - -@doc("The version of the model used for inference, expressed as the model date.") -scalar ModelVersion extends string; diff --git a/specification/ai/HealthInsights/HealthInsights.Common/model.common.shared.tsp b/specification/ai/HealthInsights/HealthInsights.Common/model.common.shared.tsp index fc0f9e6577ac..327af95dabdb 100644 --- a/specification/ai/HealthInsights/HealthInsights.Common/model.common.shared.tsp +++ b/specification/ai/HealthInsights/HealthInsights.Common/model.common.shared.tsp @@ -2,23 +2,161 @@ using TypeSpec.Rest; namespace AzureHealthInsights; +@doc("ConditionStage") +model ConditionStage { + @doc(""" + Simple summary (disease specific) + see: https://www.hl7.org/fhir/valueset-condition-stage.html +""") + summary: Fhir.R4.CodeableConcept; + + @doc(""" + Kind of staging + see: https://www.hl7.org/fhir/valueset-condition-stage-kind.html + """) + type?: Fhir.R4.CodeableConcept; +} + +@doc("InterpretationType ") +enum InterpretationType { + @doc("Normal") + Normal: "normal", + + @doc("Abnormal") + Abnormal: "abnormal", + + @doc("Below normal") + Low: "low", + + @doc("Above normal") + High: "high", + + @doc("Better") + Better: "better", + + @doc("Worse") + Worse: "worse", + + @doc("Resistant") + Resistant: "resistant", + + @doc("Susceptible") + Susceptible: "susceptible", + + @doc("As Expected") + Expected: "expected", + + @doc("Not as Expected") + NotExpected: "notExpected", +} + @doc(""" -A piece of clinical information, expressed as a code in a clinical coding system. +ObservationStatusType based on FHIR valueset observation-status +see: https://www.hl7.org/fhir/codesystem-observation-status.html """) -model ClinicalCodedElement { - @doc("The clinical coding system, e.g. ICD-10, SNOMED-CT, UMLS.") - system: string; +enum ObservationStatusType { + @doc("The existence of the observation is registered, but there is no result yet available.") + Registered: "registered", - @doc("The code within the given clinical coding system.") - code: string; + @doc("This is an initial or interim observation: data may be incomplete or unverified.") + Preliminary: "preliminary", - @doc("The name of this coded concept in the coding system.") - name?: string; + @doc(""" + The observation is complete and there are no further actions needed. Additional information such as 'released', 'signed', etc would be represented using [Provenance](provenance.html) which provides not only the act but also the actors and dates and other related data. + These act states would be associated with an observation status of `preliminary` until they are all completed and then a status of `final` would be applied. + """) + Final: "final", - @doc("A value associated with the code within the given clinical coding system.") - value?: string; + @doc("Subsequent to being Final, the observation has been modified subsequent. This includes updates/new information and corrections.") + Amended: "amended", + + @doc("Subsequent to being Final, the observation has been modified to correct an error in the test result.") + Corrected: "corrected", + + @doc("The observation is unavailable because the measurement was not started or not completed (also sometimes called \"aborted\").") + Cancelled: "cancelled", + + @doc("The observation has been withdrawn following previous final release. This electronic record should never have existed, though it is possible that real-world decisions were based on it. (If real-world activity has occurred, the status should be \"cancelled\" rather than \"entered-in-error\".)") + EnteredInError: "enteredInError", + + @doc("The authoring/source system does not know which of the status values currently applies for this observation. Note: This concept is not to be used for \"other\" - one of the listed statuses is presumed to apply, but the authoring/source system does not know which.") + Unknown: "unknown", } +@doc(""" +ConditionDiagnosisSeverityType based on SNOMED CT International edition 31-July 2022 +see: http://snomed.info/sct +""") +enum ConditionDiagnosisSeverityType { + @doc("Severe ( http://snomed.info/sct#24484000 ))") + Severe: "severe", + + @doc("Moderate ( http://snomed.info/sct#6736007 ))") + Moderate: "moderate", + + @doc("Mild ( http://snomed.info/sct#255604002 ))") + Mild: "mild", +} + +@doc(""" +ConditionCategoryType based on FHIR valueset condition-category +""") +enum ConditionCategoryType { + @doc("An item on a problem list that can be managed over time and can be expressed by a practitioner (e.g. physician, nurse), patient or related person.") + ProblemListItem: "problemListItem", + + @doc("A point in time diagnosis (e.g. from a physician or nurse) in context of an encounter.") + EncounterDiagnosis: "encounterDiagnosis", +} + +@doc(""" +VerificationStatusType based of FHIR valueset condition-ver-status. +see: https://terminology.hl7.org/5.1.0/CodeSystem-condition-ver-status.html +""") +enum VerificationStatusType { + @doc("There is not sufficient diagnostic and/or clinical evidence to treat this as a confirmed condition.") + Unconfirmed: "unconfirmed", + + @doc("This is a tentative diagnosis - still a candidate that is under consideration.") + Provisional: "provisional", + + @doc("One of a set of potential (and typically mutually exclusive) diagnoses asserted to further guide the diagnostic process and preliminary treatment.") + Differential: "differential", + + @doc("There is sufficient diagnostic and/or clinical evidence to treat this as a confirmed condition.") + Confirmed: "confirmed", + + @doc("This condition has been ruled out by diagnostic and clinical evidence.") + Refuted: "refuted", + + @doc("The statement was entered in error and is not valid.") + EnteredInError: "enteredInError", +} + +// @doc(""" +// ClinicalStatusType based on FHIR ValueSet condition-clinical. +// See: https://terminology.hl7.org/5.1.0/CodeSystem-condition-clinical.html +// """) +// enum ClinicalStatusType { +// @doc("The subject is currently experiencing the condition or situation, there is evidence of the condition or situation, or considered to be a significant risk.") +// Active: "active"; +// @doc("The subject is experiencing a reoccurrence or repeating of a previously resolved condition or situation, e.g. urinary tract infection, food insecurity.") +// Recurrence: "recurrence"; +// @doc("The subject is experiencing a return of a condition or situation after a period of improvement or remission, e.g. relapse of cancer, alcoholism.") +// Relapse: "relapse"; +// @doc("The subject is no longer experiencing the condition or situation and there is no longer evidence or appreciable risk of the condition or situation.") +// Inactive: "inactive"; +// @doc("The subject is not presently experiencing the condition or situation, but there is a risk of the condition or situation returning.") +// Remission: "remission"; +// @doc("The subject is not presently experiencing the condition or situation and there is a negligible perceived risk of the condition or situation returning.") +// Resolved: "resolved"; +// @doc(""" +// The authoring/source system does not know which of the status values currently applies for this condition. +// Note: This concept is not to be used for 'other' - one of the listed statuses is presumed to apply, but the authoring/source system does not know which. +// """) +// Unknown: "unknown"; +// } + @doc(""" A location given as a combination of city, state and country/region. It could specify a city, a state or a country/region. In case a city is specified, either state +country/region or country/region (for countries/regions where there are no states) should be added. @@ -34,3 +172,38 @@ model GeographicLocation { @doc("Country/region name.") countryOrRegion: string; } + +@doc("A duration of time during which an event is happening") +model TimePeriod { + @doc("Starting time with inclusive boundary") + start?: utcDateTime; + + @doc("End time with inclusive boundary, if not ongoing") + end?: utcDateTime; +} + +@doc("Procedure information") +model OrderedProcedure is Fhir.R4.Extendible { + @doc("Procedure code") + code?: Fhir.R4.CodeableConcept; + + @doc("Procedure description") + description?: string; +} + +@doc(""" +A piece of clinical information, expressed as a code in a clinical coding system. +""") +model ClinicalCodedElement { + @doc("The clinical coding system, e.g. ICD-10, SNOMED-CT, UMLS.") + system: string; + + @doc("The code within the given clinical coding system.") + code: string; + + @doc("The name of this coded concept in the coding system.") + name?: string; + + @doc("A value associated with the code within the given clinical coding system.") + value?: string; +} diff --git a/specification/ai/HealthInsights/HealthInsights.Common/primitives.tsp b/specification/ai/HealthInsights/HealthInsights.Common/primitives.tsp index c1fabf7a1040..e8a887b5d93e 100644 --- a/specification/ai/HealthInsights/HealthInsights.Common/primitives.tsp +++ b/specification/ai/HealthInsights/HealthInsights.Common/primitives.tsp @@ -1,17 +1,62 @@ using Azure.Core; using TypeSpec.Http; +using Azure.Core.Traits; + namespace AzureHealthInsights; #suppress "@azure-tools/typespec-azure-core/long-running-polling-operation-required" "This is a template" @doc("Long running RPC operation template") -op LongRunningRpcOperation< - TParams, - TResponse -> is Azure.Core.Foundations.Operation< +op HealthInsightsLongRunningRpcOperation< + TParams extends TypeSpec.Reflection.Model, + TResponse extends TypeSpec.Reflection.Model, + TModelResult extends TypeSpec.Reflection.Model, + Traits extends TypeSpec.Reflection.Model = {} +> is Azure.Core.RpcOperation< TParams & RepeatabilityRequestHeaders, - (Foundations.AcceptedResponse & Foundations.RetryAfterHeader> & - RepeatabilityResponseHeaders) | TResponse, - RepeatabilityRequestHeaders & RepeatabilityResponseHeaders, - Azure.Core.Foundations.ErrorResponse + RepeatabilityResponseHeaders & + HealthInsightsOperationStatus, + Traits +>; + +#suppress "@azure-tools/typespec-azure-core/long-running-polling-operation-required" "This is a template" +@doc("Long running Pool operation template") +op HealthInsightsLongRunningPollOperation is Azure.Core.RpcOperation< + { + @doc("A processing job identifier.") + @path("id") + id: Azure.Core.uuid; + }, + TResult, + HealthInsightsRetryAfterTrait >; + +/** + * Metadata for long running operation status monitor locations. + * @template TStatusResult The type of the operation status result. + */ +@doc("Metadata for long running operation status monitor locations") +model HealthInsightsLongRunningStatusLocation { + @pollingLocation + @doc("The location for monitoring the operation state.") + @TypeSpec.Http.header("Operation-Location") + operationLocation: HealthInsightsResourceLocation>; +} + +/** + * A URL that points to a resource. + * @template TResource The type of resource that the URL points to. + */ +@doc("The location of an instance of {name}", TResource) +scalar HealthInsightsResourceLocation extends url; + +@trait("HealthInsightsRetryAfterTrait") +@doc("Health Insights retry after trait") +model HealthInsightsRetryAfterTrait { + @doc("The retry-after header.") + retryAfter: { + @traitLocation(TraitLocation.Response) + response: Foundations.RetryAfterHeader; + }; +} diff --git a/specification/ai/HealthInsights/HealthInsights.OncoPhenotype/client.tsp b/specification/ai/HealthInsights/HealthInsights.OncoPhenotype/client.tsp index 8f8460ce9d82..741be34c76ff 100644 --- a/specification/ai/HealthInsights/HealthInsights.OncoPhenotype/client.tsp +++ b/specification/ai/HealthInsights/HealthInsights.OncoPhenotype/client.tsp @@ -3,14 +3,12 @@ import "./route.oncophenotype.tsp"; import "@typespec/rest"; import "@typespec/http"; -import "@typespec/versioning"; import "../HealthInsights.OpenAPI/service.tsp"; using Azure.ClientGenerator.Core; -@TypeSpec.Versioning.useDependency(Azure.Core.Versions.v1_0_Preview_1) @TypeSpec.Versioning.useDependency( - AzureHealthInsights.ApiVersion.v2023_03_01_preview + AzureHealthInsights.ApiVersion.v2023_09_01_Preview ) namespace ClientForAzureHealthInsights; @@ -19,6 +17,72 @@ namespace ClientForAzureHealthInsights; service: AzureHealthInsights, }) interface CancerProfilingClient { + #suppress "@azure-tools/typespec-azure-core/long-running-polling-operation-required" "Polling through operation-location" #suppress "@azure-tools/typespec-azure-core/use-standard-operations" "https://github.com/microsoft/typespec/issues/2037" inferCancerProfile is AzureHealthInsights.OncoPhenotype.createJob; } + +@@projectedName(Fhir.R4.Extension, "java", "Fhir_R4_Extension"); +@@projectedName(Fhir.R4.Extension, "csharp", "Fhir_R4_Extension"); +@@projectedName(Fhir.R4.Extendible, "java", "Fhir_R4_Extendible"); +@@projectedName(Fhir.R4.Extendible, "csharp", "Fhir_R4_Extendible"); +@@projectedName(Fhir.R4.Element, "java", "Fhir_R4_Element"); +@@projectedName(Fhir.R4.Element, "csharp", "Fhir_R4_Element"); +@@projectedName(Fhir.R4.Coding, "java", "Fhir_R4_Coding"); +@@projectedName(Fhir.R4.Coding, "csharp", "Fhir_R4_Coding"); +@@projectedName(Fhir.R4.CodeableConcept, "java", "Fhir_R4_CodeableConcept"); +@@projectedName(Fhir.R4.CodeableConcept, "csharp", "Fhir_R4_CodeableConcept"); +@@projectedName(Fhir.R4.Meta, "java", "Fhir_R4_Meta"); +@@projectedName(Fhir.R4.Meta, "csharp", "Fhir_R4_Meta"); +@@projectedName(Fhir.R4.Narrative, "java", "Fhir_R4_Narrative"); +@@projectedName(Fhir.R4.Narrative, "csharp", "Fhir_R4_Narrative"); +@@projectedName(Fhir.R4.Reference, "java", "Fhir_R4_Reference"); +@@projectedName(Fhir.R4.Reference, "csharp", "Fhir_R4_Reference"); +@@projectedName(Fhir.R4.Identifier, "java", "Fhir_R4_Identifier"); +@@projectedName(Fhir.R4.Identifier, "csharp", "Fhir_R4_Identifier"); +@@projectedName(Fhir.R4.Period, "java", "Fhir_R4_Period"); +@@projectedName(Fhir.R4.Period, "csharp", "Fhir_R4_Period"); +@@projectedName(Fhir.R4.Quantity, "java", "Fhir_R4_Quantity"); +@@projectedName(Fhir.R4.Quantity, "csharp", "Fhir_R4_Quantity"); +@@projectedName(Fhir.R4.Range, "java", "Fhir_R4_Range"); +@@projectedName(Fhir.R4.Range, "csharp", "Fhir_R4_Range"); +@@projectedName(Fhir.R4.Ratio, "java", "Fhir_R4_Ratio"); +@@projectedName(Fhir.R4.Ratio, "csharp", "Fhir_R4_Ratio"); +@@projectedName(Fhir.R4.Annotation, "java", "Fhir_R4_Annotation"); +@@projectedName(Fhir.R4.Annotation, "csharp", "Fhir_R4_Annotation"); +@@projectedName(Fhir.R4.SampledData, "java", "Fhir_R4_SampledData"); +@@projectedName(Fhir.R4.SampledData, "csharp", "Fhir_R4_SampledData"); +@@projectedName(Fhir.R4.ContactDetail, "java", "Fhir_R4_ContactDetail"); +@@projectedName(Fhir.R4.ContactDetail, "csharp", "Fhir_R4_ContactDetail"); +@@projectedName(Fhir.R4.ContactPoint, "java", "Fhir_R4_ContactPoint"); +@@projectedName(Fhir.R4.ContactPoint, "csharp", "Fhir_R4_ContactPoint"); +@@projectedName(Fhir.R4.Resource, "java", "Fhir_R4_Resource"); +@@projectedName(Fhir.R4.Resource, "csharp", "Fhir_R4_Resource"); +@@projectedName(Fhir.R4.DomainResource, "java", "Fhir_R4_DomainResource"); +@@projectedName(Fhir.R4.DomainResource, "csharp", "Fhir_R4_DomainResource"); +@@projectedName(Fhir.R4.Condition, "java", "Fhir_R4_Condition"); +@@projectedName(Fhir.R4.Condition, "csharp", "Fhir_R4_Condition"); +@@projectedName(Fhir.R4.ConditionStage, "java", "Fhir_R4_ConditionStage"); +@@projectedName(Fhir.R4.ConditionStage, "csharp", "Fhir_R4_ConditionStage"); +@@projectedName(Fhir.R4.Observation, "java", "Fhir_R4_Observation"); +@@projectedName(Fhir.R4.Observation, "csharp", "Fhir_R4_Observation"); +@@projectedName(Fhir.R4.ObservationReferenceRange, + "java", + "Fhir_R4_ObservationReferenceRange" +); +@@projectedName(Fhir.R4.ObservationReferenceRange, + "csharp", + "Fhir_R4_ObservationReferenceRange" +); +@@projectedName(Fhir.R4.ObservationComponent, + "java", + "Fhir_R4_ObservationComponent" +); +@@projectedName(Fhir.R4.ObservationComponent, + "csharp", + "Fhir_R4_ObservationComponent" +); +@@projectedName(Fhir.R4.ResearchStudy, "java", "Fhir_R4_ResearchStudy"); +@@projectedName(Fhir.R4.ResearchStudy, "csharp", "Fhir_R4_ResearchStudy"); +@@projectedName(AzureHealthInsights.PatientInfoSex, "client", "PatientSex"); +@@projectedName(AzureHealthInsights.PatientInfo, "client", "PatientDetails"); diff --git a/specification/ai/HealthInsights/HealthInsights.OncoPhenotype/model.oncophenotype.tsp b/specification/ai/HealthInsights/HealthInsights.OncoPhenotype/model.oncophenotype.tsp index d8d119be6f73..b1671219ef20 100644 --- a/specification/ai/HealthInsights/HealthInsights.OncoPhenotype/model.oncophenotype.tsp +++ b/specification/ai/HealthInsights/HealthInsights.OncoPhenotype/model.oncophenotype.tsp @@ -1,10 +1,9 @@ import "../HealthInsights.Common/model.common.request.tsp"; import "../HealthInsights.Common/model.common.response.tsp"; import "../HealthInsights.Common/model.common.shared.tsp"; -import "@azure-tools/typespec-azure-core"; +import "../HealthInsights.Common/model.common.fhir.elements.tsp"; using TypeSpec.Rest; -using Azure.Core; namespace AzureHealthInsights; @@ -16,21 +15,15 @@ model OncoPhenotypeData { configuration?: OncoPhenotypeModelConfiguration; } -@resource("oncophenotype/jobs") @doc("The response for the Onco Phenotype request.") -model OncoPhenotypeResult { - ...Response; - - @doc("The inference results for the Onco Phenotype request.") - @visibility("read") - @lroResult - results?: OncoPhenotypeResults; -} +@resource("onco-phenotype/jobs") +model OncoPhenotypeResult + is HealthInsightsOperationStatus; @doc("The inference results for the Onco Phenotype request.") -model OncoPhenotypeResults { +model OncoPhenotypeInferenceResult { @doc("Results for the patients given in the request.") - patients: OncoPhenotypePatientResult[]; + patientResults: OncoPhenotypePatientResult[]; @doc("The version of the model used for inference, expressed as the model date.") modelVersion: ModelVersion; @@ -39,10 +32,10 @@ model OncoPhenotypeResults { @doc("The results of the model's work for a single patient.") model OncoPhenotypePatientResult { @doc("The identifier given for the patient in the request.") - id: string; + patientId: string; @doc("The model's inferences for the given patient.") - inferences: OncoPhenotypeInference[]; + inferences: Array; } @doc("An inference made by the Onco Phenotype model regarding a patient.") @@ -89,4 +82,5 @@ enum OncoPhenotypeInferenceType { PathologicStageT: "pathologicStageT", PathologicStageN: "pathologicStageN", PathologicStageM: "pathologicStageM", + DiagnosisDate: "diagnosisDate", } diff --git a/specification/ai/HealthInsights/HealthInsights.OncoPhenotype/route.oncophenotype.tsp b/specification/ai/HealthInsights/HealthInsights.OncoPhenotype/route.oncophenotype.tsp index 9d9ffa6e90ce..6f9f5f8e2ce1 100644 --- a/specification/ai/HealthInsights/HealthInsights.OncoPhenotype/route.oncophenotype.tsp +++ b/specification/ai/HealthInsights/HealthInsights.OncoPhenotype/route.oncophenotype.tsp @@ -12,16 +12,24 @@ using TypeSpec.Http; namespace AzureHealthInsights; interface OncoPhenotype { + #suppress "@azure-tools/typespec-azure-core/no-rpc-path-params" "Service uses a jobId in the path" @summary("Get Onco Phenotype job details") @tag("OncoPhenotype") @doc("Gets the status and details of the Onco Phenotype job.") - getJob is Azure.Core.ResourceRead; + @get + @route("/onco-phenotype/jobs/{id}") + getJob is HealthInsightsLongRunningPollOperation; + #suppress "@azure-tools/typespec-azure-core/long-running-polling-operation-required" "Polling through operation-location" #suppress "@azure-tools/typespec-azure-core/use-standard-operations" "There is no long-running RPC template in Azure.Core" @summary("Create Onco Phenotype job") @tag("OncoPhenotype") @doc("Creates an Onco Phenotype job with the given request body.") @pollingOperation(OncoPhenotype.getJob) - @route("/oncophenotype/jobs") - createJob is LongRunningRpcOperation; + @route("/onco-phenotype/jobs") + createJob is HealthInsightsLongRunningRpcOperation< + OncoPhenotypeData, + OncoPhenotypeResult, + OncoPhenotypeInferenceResult + >; } diff --git a/specification/ai/HealthInsights/HealthInsights.OncoPhenotype/tspconfig.yaml b/specification/ai/HealthInsights/HealthInsights.OncoPhenotype/tspconfig.yaml index e1df4402a136..144ffa11cce0 100644 --- a/specification/ai/HealthInsights/HealthInsights.OncoPhenotype/tspconfig.yaml +++ b/specification/ai/HealthInsights/HealthInsights.OncoPhenotype/tspconfig.yaml @@ -1,19 +1,51 @@ -emit: [] +parameters: + "service-dir": + default: "sdk/healthinsights" + "service-name": + default: "HealthInsights" + "dependencies": + "additionalDirectories": + - "specification/ai/HealthInsights/HealthInsights.Common/" + - "specification/ai/HealthInsights/HealthInsights.OpenAPI/" + default: "" + "python-sdk-folder": + default: "{project-root}/azure-sdk-for-python/" + "java-sdk-folder": + default: "{project-root}/azure-sdk-for-java/" + "js-sdk-folder": + default: "{project-root}/azure-sdk-for-js/" + "csharp-sdk-folder": + default: "{project-root}/azure-sdk-for-net/" + "service-directory-name": + default: "healthinsights" +emit: + - "@azure-tools/typespec-autorest" linter: extends: - "@azure-tools/typespec-azure-core/all" options: - "@azure-tools/typespec-csharp": - namespace : "Azure.Health.Insights.CancerProfiling" - clear-output-folder : true - new-project : false - model-namespace : false + "@azure-tools/typespec-python": + package-pprint-name: '"Azure Health Insights - Cancer Profiling"' + package-mode: "dataplane" + package-version: 1.0.0b2 + package-dir: "azure-healthinsights-cancerprofiling" + package-name: "{package-dir}" + emitter-output-dir: "{python-sdk-folder}/sdk/{service-directory-name}/{package-name}" "@azure-tools/typespec-java": - namespace: "Com.Azure.Health.Insights.CancerProfiling" + package-dir: "azure-healthinsights-cancerprofiling" + namespace: com.azure.health.insights.cancerprofiling + partial-update: true + emitter-output-dir: "{java-sdk-folder}/sdk/{service-directory-name}/azure-health-insights-cancerprofiling" + "@azure-tools/typespec-csharp": + save-inputs: false clear-output-folder: true - new-project: false + package-dir: "Azure.Health.Insights.CancerProfiling" + namespace: "{package-dir}" model-namespace: false - "@azure-tools/cadl-typescript": + "@azure-tools/typespec-ts": + package-dir: "azurehealthinsightscancerprofiling-rest" + emitter-output-dir: "{js-sdk-folder}/sdk/{service-directory-name}/health-insights-cancerprofiling-rest" + generateMetadata: true + generateTest: true packageDetails: - name: "@azure-rest/health-insights-cancerprofiling" - description: "Azure Health Insights CancerProfiling" + name: "@azure-rest/health-insights-cancerprofiling" \ No newline at end of file diff --git a/specification/ai/HealthInsights/HealthInsights.OpenAPI/examples/2023-09-01-preview/SuccessfulOncoPhenotypeRequest.json b/specification/ai/HealthInsights/HealthInsights.OpenAPI/examples/2023-09-01-preview/SuccessfulOncoPhenotypeRequest.json new file mode 100644 index 000000000000..08280a8b2e72 --- /dev/null +++ b/specification/ai/HealthInsights/HealthInsights.OpenAPI/examples/2023-09-01-preview/SuccessfulOncoPhenotypeRequest.json @@ -0,0 +1,64 @@ +{ + "operationId": "OncoPhenotype_CreateJob", + "title": "Creates an Onco Phenotype job with the given request body.", + "parameters": { + "endpoint": "{endpoint}", + "api-version": "2023-09-01-preview", + "body": { + "patients": [ + { + "id": "Patient ID Example 1", + "info": { + "sex": "female", + "birthDate": "1975-09-27" + }, + "patientDocuments": [ + { + "type": "note", + "clinicalType": "historyAndPhysical", + "id": "1", + "language": "en", + "createdDateTime": "2021-10-26T16:54:44.739Z", + "content": { + "sourceType": "inline", + "value": "Sample note 1" + } + }, + { + "type": "note", + "clinicalType": "imaging", + "id": "2", + "language": "en", + "createdDateTime": "2020-11-26T16:39:44.739Z", + "content": { + "sourceType": "inline", + "value": "Sample note 2" + } + } + ] + } + ], + "configuration": { + "verbose": true, + "includeEvidence": true, + "inferenceTypes": [ + "histology", + "clinicalStageT" + ], + "checkForCancerCase": false + } + } + }, + "responses": { + "202": { + "headers": { + "Operation-Location": "{endpoint}/health-insights/onco-phenotype/jobs/{id}?api-version=2023-09-01-preview", + "Retry-After": "1" + }, + "body": { + "status": "notStarted", + "id": "3fa85f64-5717-4562-b3fc-2c963f66afa6" + } + } + } +} diff --git a/specification/ai/HealthInsights/HealthInsights.OpenAPI/examples/2023-09-01-preview/SuccessfulOncoPhenotypeResponse.json b/specification/ai/HealthInsights/HealthInsights.OpenAPI/examples/2023-09-01-preview/SuccessfulOncoPhenotypeResponse.json new file mode 100644 index 000000000000..5695c10cdfc4 --- /dev/null +++ b/specification/ai/HealthInsights/HealthInsights.OpenAPI/examples/2023-09-01-preview/SuccessfulOncoPhenotypeResponse.json @@ -0,0 +1,65 @@ +{ + "operationId": "OncoPhenotype_GetJob", + "title": "Gets the status and details of the Onco Phenotype job.", + "parameters": { + "endpoint": "{endpoint}", + "api-version": "2023-09-01-preview", + "id": "3fa85f64-5717-4562-b3fc-2c963f66afa6" + }, + "responses": { + "200": { + "body": { + "id": "3fa85f64-5717-4562-b3fc-2c963f66afa6", + "createdDateTime": "2021-11-26T17:22:27.386Z", + "expirationDateTime": "2021-11-26T17:22:27.386Z", + "lastUpdateDateTime": "2021-11-26T17:22:27.386Z", + "status": "succeeded", + "result": { + "patientResults": [ + { + "patientId": "Patient ID Example 1", + "inferences": [ + { + "type": "histology", + "value": "8561", + "description": "Adenolymphoma", + "confidenceScore": 0.85, + "evidence": [ + { + "patientDataEvidence": { + "id": "1", + "text": "string", + "offset": 70, + "length": 135 + }, + "importance": 1 + } + ] + }, + { + "type": "clinicalStageT", + "value": "T3", + "description": "Locally advanced disease at risk for micrometastases", + "confidenceScore": 0.88, + "evidence": [ + { + "patientDataEvidence": { + "id": "2", + "text": "string", + "offset": 12, + "length": 9 + }, + "importance": 1 + } + ], + "caseId": "1" + } + ] + } + ], + "modelVersion": "2021-11-26" + } + } + } + } +} diff --git a/specification/ai/HealthInsights/HealthInsights.OpenAPI/examples/2023-09-01-preview/SuccessfulPatientTimelineRequest.json b/specification/ai/HealthInsights/HealthInsights.OpenAPI/examples/2023-09-01-preview/SuccessfulPatientTimelineRequest.json new file mode 100644 index 000000000000..50500c8cea6e --- /dev/null +++ b/specification/ai/HealthInsights/HealthInsights.OpenAPI/examples/2023-09-01-preview/SuccessfulPatientTimelineRequest.json @@ -0,0 +1,23 @@ +{ + "operationId": "PatientTimeline_CreateJob", + "title": "Creates a Patient Timeline job with the given request body.", + "parameters": { + "endpoint": "{endpoint}", + "api-version": "2023-09-01-preview", + "body": { + "patients": [] + } + }, + "responses": { + "202": { + "headers": { + "Operation-Location": "{endpoint}/health-insights/patient-timeline/jobs/{id}?api-version=2023-09-01-preview", + "Retry-After": "1" + }, + "body": { + "status": "notStarted", + "id": "3fa85f64-5717-4562-b3fc-2c963f66afa6" + } + } + } +} diff --git a/specification/ai/HealthInsights/HealthInsights.OpenAPI/examples/2023-09-01-preview/SuccessfulPatientTimelineResponse.json b/specification/ai/HealthInsights/HealthInsights.OpenAPI/examples/2023-09-01-preview/SuccessfulPatientTimelineResponse.json new file mode 100644 index 000000000000..a73eff7a3e34 --- /dev/null +++ b/specification/ai/HealthInsights/HealthInsights.OpenAPI/examples/2023-09-01-preview/SuccessfulPatientTimelineResponse.json @@ -0,0 +1,24 @@ +{ + "operationId": "PatientTimeline_GetJob", + "title": "Gets the status and details of the Patient Timeline job.", + "parameters": { + "endpoint": "{endpoint}", + "api-version": "2023-09-01-preview", + "id": "a4d3d73e-2be3-4ca1-bd4f-66a5bdd19754" + }, + "responses": { + "200": { + "body": { + "id": "a4d3d73e-2be3-4ca1-bd4f-66a5bdd19754", + "createdDateTime": "2021-11-28T09:13:11.046Z", + "expirationDateTime": "2021-11-28T09:13:11.046Z", + "lastUpdateDateTime": "2021-11-28T09:13:11.046Z", + "status": "succeeded", + "result": { + "patientResults": [], + "modelVersion": "2021-10-28" + } + } + } + } +} diff --git a/specification/ai/HealthInsights/HealthInsights.OpenAPI/examples/2023-09-01-preview/SuccessfulRadiologyInsightsRequest.json b/specification/ai/HealthInsights/HealthInsights.OpenAPI/examples/2023-09-01-preview/SuccessfulRadiologyInsightsRequest.json new file mode 100644 index 000000000000..6041b94cdfcb --- /dev/null +++ b/specification/ai/HealthInsights/HealthInsights.OpenAPI/examples/2023-09-01-preview/SuccessfulRadiologyInsightsRequest.json @@ -0,0 +1,121 @@ +{ + "operationId": "RadiologyInsights_CreateJob", + "title": "Creates a Radiology Insights job with the given request body.", + "parameters": { + "endpoint": "{endpoint}", + "api-version": "2023-09-01-preview", + "body": { + "configuration": { + "inferenceOptions": { + "followupRecommendationOptions": { + "includeRecommendationsWithNoSpecifiedModality": false, + "includeRecommendationsInReferences": false, + "provideFocusedSentenceEvidence": false + }, + "findingOptions": { + "provideFocusedSentenceEvidence": false + } + }, + "inferenceTypes": [ + "finding", + "ageMismatch", + "lateralityDiscrepancy", + "sexMismatch", + "completeOrderDiscrepancy", + "limitedOrderDiscrepancy", + "criticalResult", + "criticalRecommendation", + "followupRecommendation", + "followupCommunication", + "radiologyProcedure" + ], + "locale": "en-US", + "verbose": false, + "includeEvidence": true + }, + "patients": [ + { + "id": "sample id 1", + "info": { + "sex": "male", + "clinicalInfo": [ + { + "resourceType": "Observation", + "status": "unknown", + "code": { + "coding": [ + { + "system": "http://www.nlm.nih.gov/research/umls", + "code": "C0018802", + "display": "MalignantNeoplasms" + } + ] + }, + "valueBoolean": "true" + } + ] + }, + "encounters": [ + { + "id": "encounterid1", + "period": { + "start": "2023-12-21T00:00:00", + "end": "2023-12-21T00:00:00" + }, + "class": "inpatient" + } + ], + "patientDocuments": [ + { + "type": "note", + "clinicalType": "radiologyReport", + "id": "docid1", + "language": "en", + "authors": [ + { + "id": "authorid1", + "fullName": "authorname1" + } + ], + "specialtyType": "radiology", + "createdDateTime": "2023-12-21T00:00:00", + "administrativeMetadata": { + "orderedProcedures": [ + { + "code": { + "coding": [ + { + "system": "Http://hl7.org/fhir/ValueSet/cpt-all", + "code": "111111", + "display": "CT ABD/PELVIS" + } + ] + }, + "description": "CT ABD/PELVIS" + } + ], + "encounterId": "encounterid1" + }, + "content": { + "sourceType": "inline", + "value": "[**2143-4-13**] 5:04 PM\r\nCT ABD W&W/O C; CT CHEST W&W/O C Clip # [**Clip Number (Radiology) 38350**]\r\nCT PELVIS W&W/O C\r\nReason: ? PE, evidence of pneumonia\r\nAdmitting Diagnosis: SEPSIS\r\nField of view: 38 Contrast: OPTIRAY Amt: 130\r\n______________________________________________________________________________\r\n[**Hospital 4**] MEDICAL CONDITION:\r\n52 year old man with urosepsis, s/p nephrostogram on [**4-12**], today with acute\r\nSOB, fever, rigors.\r\nREASON FOR THIS EXAMINATION:\r\n? PE, evidence of pneumonia\r\nNo contraindications for IV contrast\r\n______________________________________________________________________________\r\nFINAL REPORT\r\nINDICATION: History of urosepsis status post nephrostogram on [**4-12**], today\r\nwith acute shortness of breath, fevers, and rigors. Also reported hematocrit\r\ndrop. Evaluate for pulmonary embolism or hematoma.\r\nCOMPARISON: Non-contrast CT of the abdomen and pelvis dated [**2143-4-11**].\r\nTECHNIQUE: MDCT acquired images of the chest, abdomen, and pelvis were\r\nobtained before and after the administration of IV contrast. A true CT\r\nangiogram could not be performed due to lack of appropriate intravenous\r\naccess.\r\nCT OF THE CHEST WITHOUT AND WITH IV CONTRAST: Evaluation of the pulmonary\r\narteries is limited with no large central pulmonary embolism seen. Evaluation\r\nof the segmental and subsegmental branches is limited. There is a central\r\nvenous catheter that terminates in the right atrium. There are numerous small\r\nmesenteric and axillary lymph nodes that do not meet CT criteria for\r\npathologic enlargement. There are coronary artery calcifications. There are\r\nbilateral small layering pleural effusions with associated compressive\r\natelectasis. The images of the lungs are limited due to motion. There\r\nappears to be a patchy, predominantly ground-glass opacity in both lower\r\nlobes, left worse than right. The aorta appears intact. There is debris in\r\nthe trachea.\r\nCT OF THE ABDOMEN WITHOUT AND WITH IV CONTRAST: There is high-density\r\nmaterial tracking along the course of a dilated left ureter consistent with\r\nhemorrhage that is new compared to the previous study. New stranding in the\r\nleft retroperitoneum is also present consistent with retroperitoneal\r\nhemorrhage. Perinephric stranding is present, as was seen on the previous\r\nstudy. The degree of dilatation of the left ureter is unchanged. Several\r\nfoci of air outside of the collecting system are present, presumably\r\npostprocedural in nature. Contrast-enhanced images show abnormal perfusion of\r\nthe left kidney with a striated appearance, most severe at the upper pole with\r\nperipheral wedge-shaped hypoenhancing areas also present on top of the areas\r\nof reduced perfusion. No active extravasation of contrast is seen. The right\r\nkidney is normal. The liver, spleen, and adrenal glands are unremarkable.\r\nPancreas is unremarkable with slightly prominent distal common bile duct\r\nmeasuring up to 8-9 mm. There is a small cystic lesion measuring 5 mm at the\r\nhead of the pancreas (series 10, image 143). Small and large bowel are\r\n(Over)\r\n[**2143-4-13**] 5:04 PM\r\nCT ABD W&W/O C; CT CHEST W&W/O C Clip # [**Clip Number (Radiology) 38350**]\r\nCT PELVIS W&W/O C\r\nReason: ? PE, evidence of pneumonia\r\nAdmitting Diagnosis: SEPSIS\r\nField of view: 38 Contrast: OPTIRAY Amt: 130\r\n______________________________________________________________________________\r\nFINAL REPORT\r\n(Cont)\r\ngrossly unremarkable. The aorta, celiac artery, superior mesenteric artery,\r\ninferior mesenteric artery, and renal arteries appear patent.\r\nCT OF THE PELVIS WITHOUT AND WITH IV CONTRAST: The prostate gland is\r\nenlarged. Thickening of the bladder wall is again demonstrated. Several foci\r\nof air within the bladder are presumably secondary to the Foley catheter. The\r\nrectum and sigmoid colon are unremarkable.\r\nBONE WINDOWS: There are degenerative changes with no suspicious lytic or\r\nsclerotic lesions.\r\nIMPRESSION:\r\n1. New high-density material surrounding the left ureter and tracking within\r\nthe retroperitoneum consistent with hemorrhage.\r\n2. Abnormal perfusion of the left kidney, most severe at the upper pole.\r\nFindings are consistent with pyelonephritis. Edema and abnormal perfusion at\r\nthe upper pole and interpolar region medially with multiple peripheral\r\nhypoenhancing wedge- shaped regions likely represent ischemia and a component\r\nof infarction.\r\n3. Limited examination for pulmonary embolism due to suboptimal contrast\r\nbolus with no large central embolus seen. Evaluation of distal segmental and\r\nsubsegmental branches is limited.\r\n4. Small bilateral layering pleural effusions with associated compressive\r\natelectasis. Patchy predominantly ground-glass opacities in both lower lobes,\r\nleft worse than right could represent pneumonia or pneumonitis.\r\n5. 5mm cystic lesion in the head of the pancreas. Recommend 1 year follow up.\r\nThe above was discussed with Dr. [**First Name8 (NamePattern2) 951**] [**Last Name (NamePattern1) 1238**] at approximately 6:30 p.m. on\r\n[**2143-4-13**].\r\n" + } + } + ] + } + ] + } + }, + "responses": { + "202": { + "headers": { + "Operation-Location": "{endpoint}/health-insights/radiology-insights/jobs/{id}?api-version=2023-09-01-preview", + "Retry-After": "1" + }, + "body": { + "status": "notStarted", + "id": "ad28aef5-87f3-4d2d-97eb-5cdeb4519d12" + } + } + } +} diff --git a/specification/ai/HealthInsights/HealthInsights.OpenAPI/examples/2023-09-01-preview/SuccessfulRadiologyInsightsResponse.json b/specification/ai/HealthInsights/HealthInsights.OpenAPI/examples/2023-09-01-preview/SuccessfulRadiologyInsightsResponse.json new file mode 100644 index 000000000000..6167030c095f --- /dev/null +++ b/specification/ai/HealthInsights/HealthInsights.OpenAPI/examples/2023-09-01-preview/SuccessfulRadiologyInsightsResponse.json @@ -0,0 +1,33451 @@ +{ + "operationId": "RadiologyInsights_GetJob", + "title": "Gets the status and details of the Radiology Insights job.", + "parameters": { + "endpoint": "{endpoint}", + "api-version": "2023-09-01-preview", + "id": "ad28aef5-87f3-4d2d-97eb-5cdeb4519d12" + }, + "responses": { + "200": { + "body": { + "result": { + "patientResults": [ + { + "patientId": "sample id 1", + "inferences": [ + { + "kind": "finding", + "finding": { + "resourceType": "Observation", + "id": "6839", + "status": "unknown", + "category": [ + { + "coding": [ + { + "system": "http://snomed.info/sct", + "code": "246501002", + "display": "TECHNIQUE (ATTRIBUTE)" + } + ] + } + ], + "code": { + "coding": [ + { + "system": "http://snomed.info/sct", + "code": "404684003", + "display": "CLINICAL FINDING (FINDING)" + } + ] + }, + "component": [ + { + "code": { + "coding": [ + { + "system": "http://snomed.info/sct", + "code": "46150521", + "display": "MULTIPLE (QUALIFIER VALUE)" + } + ] + }, + "valueBoolean": false + } + ] + }, + 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"http://www.nlm.nih.gov/research/umls/who", + "code": "1233", + "display": "AIDS" + }, + { + "system": "http://hl7.org/fhir/sid/icpc-2", + "code": "MTHU080583", + "display": "AIDS" + }, + { + "system": "http://www.nlm.nih.gov/research/umls/nci_nci-gloss", + "code": "CDR0000044365", + "display": "AIDS" + }, + { + "system": "http://www.nlm.nih.gov/research/umls/csp", + "code": "1560-6271", + "display": "AIDS" + }, + { + "system": "http://hl7.org/fhir/sid/icd-9-cm", + "code": "042", + "display": "AIDS" + }, + { + "system": "http://www.nlm.nih.gov/research/umls/costar", + "code": "023", + "display": "AIDS" + }, + { + "system": "http://loinc.org", + "code": "LA10430-9", + "display": "AIDS" + }, + { + "system": "http://www.nlm.nih.gov/research/umls/ccpss", + "code": "1014998", + "display": "AIDS" + } + ], + "text": "AIDS" + }, + { + "coding": [ + { + "system": "http://www.nlm.nih.gov/research/umls", + "code": "C0008059", + "display": "Children" + }, + { + "system": "http://snomed.info/sct", + "code": "S-10170", + "display": "Children" + }, + { + "system": "http://snomed.info/sctv", + "code": "67822003", + "display": "Children" + }, + { + "system": "http://ncimeta.nci.nih.gov", + "code": "C16423", + "display": "Children" + }, + { + "system": "http://www.nlm.nih.gov/research/umls/lch_nw", + "code": "sh85023418", + "display": "Children" + }, + { + "system": "http://www.nlm.nih.gov/research/umls/aod", + "code": "0000007008", + "display": "Children" + }, + { + "system": "http://www.nlm.nih.gov/research/umls/msh", + "code": "D002648", + "display": "Children" + }, + { + "system": "http://www.nlm.nih.gov/research/umls/chv", + "code": "0000002765", + "display": "Children" + }, + { + "system": "http://www.nlm.nih.gov/research/umls/ccpss", + "code": "0060058", + "display": "Children" + }, + { + "system": "http://www.nlm.nih.gov/research/umls/csp", + "code": "0635-1343", + "display": "Children" + }, + { + "system": "http://www.nlm.nih.gov/research/umls/lch", + "code": "U005340", + "display": "Children" + }, + { + "system": "http://www.nlm.nih.gov/research/umls/hl7v3.0", + "code": "CHD", + "display": "Children" + }, + { + "system": "http://loinc.org", + "code": "LA9949-4", + "display": "Children" + }, + { + "system": "http://www.nlm.nih.gov/research/umls/nci_nichd", + "code": "C16423", + "display": "Children" + }, + { + "system": "http://www.nlm.nih.gov/research/umls/dxp", + "code": "U000730", + "display": "Children" + }, + { + "system": "http://www.nlm.nih.gov/research/umls/nci_fda", + "code": "C16423", + "display": "Children" + } + ], + "text": "Children" + }, + { + "coding": [ + { + "system": "http://www.nlm.nih.gov/research/umls", + "code": "C1566826", + "display": "Rilpivirine" + }, + { + "system": "http://www.nlm.nih.gov/research/umls/medcin", + "code": "309423", + "display": "Rilpivirine" + }, + { + "system": "http://www.whocc.no/atc", + "code": "J05AG05", + "display": "Rilpivirine" + }, + { + "system": "http://ncimeta.nci.nih.gov", + "code": "C76929", + "display": "Rilpivirine" + }, + { + "system": "http://snomed.info/sctv", + "code": "703777002", + "display": "Rilpivirine" + }, + { + "system": "http://loinc.org", + "code": "MTHU042155", + "display": "Rilpivirine" + }, + { + "system": "http://www.nlm.nih.gov/research/umls/drugbank", + "code": "DB08864", + "display": "Rilpivirine" + }, + { + "system": "http://www.nlm.nih.gov/research/umls/mmsl", + "code": "d07776", + "display": "Rilpivirine" + }, + { + "system": "http://www.nlm.nih.gov/research/umls/mthspl", + "code": "FI96A8X663", + "display": "Rilpivirine" + }, + { + "system": "http://www.nlm.nih.gov/research/umls/nci_fda", + "code": "FI96A8X663", + "display": "Rilpivirine" + }, + { + "system": "http://hl7.org/fhir/ndfrt", + "code": "4030730", + "display": "Rilpivirine" + }, + { + "system": "http://www.nlm.nih.gov/research/umls/rxnorm", + "code": "1102270", + "display": "Rilpivirine" + }, + { + "system": "http://www.nlm.nih.gov/research/umls/gs", + "code": "4688", + "display": "Rilpivirine" + }, + { + "system": "http://www.nlm.nih.gov/research/umls/usp", + "code": "m7163", + "display": "Rilpivirine" + }, + { + "system": "http://www.nlm.nih.gov/research/umls/msh", + "code": "D000068696", + "display": "Rilpivirine" + }, + { + "system": "http://www.nlm.nih.gov/research/umls/uspmg", + "code": "MTHU002683", + "display": "Rilpivirine" + }, + { + "system": "http://www.nlm.nih.gov/research/umls/nddf", + "code": "013795", + "display": "Rilpivirine" + } + ], + "text": "Rilpivirine (TMC278)" + }, + { + "coding": [ + { + "system": "http://www.nlm.nih.gov/research/umls", + "code": "C1521725", + "display": "Pediatric" + }, + { + "system": "http://loinc.org", + "code": "LP100615-6", + "display": "Pediatric" + }, + { + "system": "http://ncimeta.nci.nih.gov", + "code": "C39299", + "display": "Pediatric" + }, + { + "system": "http://www.nlm.nih.gov/research/umls/nci_nci-gloss", + "code": "CDR0000046245", + "display": "Pediatric" + } + ], + "text": "Pediatric" + }, + { + "text": "Human Immuno Deficiency (HIV) Infection" + }, + { + "coding": [ + { + "system": "http://www.nlm.nih.gov/research/umls", + "code": "C0021051", + "display": "Immunologic Deficiency Syndromes" + }, + { + "system": "http://snomed.info/sctv", + "code": "234532001", + "display": "Immunologic Deficiency Syndromes" + }, + { + "system": "http://www.nlm.nih.gov/research/umls/medcin", + "code": "39922", + "display": "Immunologic Deficiency Syndromes" + }, + { + "system": "http://hl7.org/fhir/sid/icd-10", + "code": "D84.9", + "display": "Immunologic Deficiency Syndromes" + }, + { + "system": "http://www.nlm.nih.gov/research/umls/nci_nci-gloss", + "code": "CDR0000045724", + "display": "Immunologic Deficiency Syndromes" + }, + { + "system": "http://hl7.org/fhir/sid/icd-10-cm", + "code": "D84.9", + "display": "Immunologic Deficiency Syndromes" + }, + { + "system": "http://hl7.org/fhir/sid/icd-10", + "code": "D84.9", + "display": "Immunologic Deficiency Syndromes" + }, + { + "system": "http://snomed.info/sct", + "code": "D-4600", + "display": "Immunologic Deficiency Syndromes" + }, + { + "system": "http://www.nlm.nih.gov/research/umls/csp", + "code": "1560-5885", + "display": "Immunologic Deficiency Syndromes" + }, + { + "system": "http://www.nlm.nih.gov/research/umls/mdr", + "code": "10021460", + "display": "Immunologic Deficiency Syndromes" + }, + { + "system": "http://www.nlm.nih.gov/research/umls/chv", + "code": "0000006602", + "display": "Immunologic Deficiency Syndromes" + }, + { + "system": "http://ncimeta.nci.nih.gov", + "code": "C3131", + "display": "Immunologic Deficiency Syndromes" + }, + { + "system": "http://www.nlm.nih.gov/research/umls/hpo", + "code": "HP:0002721", + "display": "Immunologic Deficiency Syndromes" + }, + { + "system": "http://www.nlm.nih.gov/research/umls/omim", + "code": "MTHU032911", + "display": "Immunologic Deficiency Syndromes" + }, + { + "system": "http://snomed.info/sct", + "code": "234532001", + "display": "Immunologic Deficiency Syndromes" + }, + { + "system": "http://hl7.org/fhir/sid/icpc-2", + "code": "B99011", + "display": "Immunologic Deficiency Syndromes" + }, + { + "system": "http://www.nlm.nih.gov/research/umls/nci_fda", + "code": "2156", + "display": "Immunologic Deficiency Syndromes" + }, + { + "system": "http://www.nlm.nih.gov/research/umls/msh", + "code": "D007153", + "display": "Immunologic Deficiency Syndromes" + }, + { + "system": "http://www.nlm.nih.gov/research/umls/nci_nichd", + "code": "C39725", + "display": "Immunologic Deficiency Syndromes" + }, + { + "system": "http://hl7.org/fhir/sid/icd-9-cm", + "code": "279.3", + "display": "Immunologic Deficiency Syndromes" + }, + { + "system": "http://www.nlm.nih.gov/research/umls/rcd", + "code": "X20GZ", + "display": "Immunologic Deficiency Syndromes" + }, + { + "system": "http://snomed.info/sct", + "code": "F-C0450", + "display": "Immunologic Deficiency Syndromes" + }, + { + "system": "http://www.nlm.nih.gov/research/umls/costar", + "code": "U000355", + "display": "Immunologic Deficiency Syndromes" + }, + { + "system": "http://loinc.org", + "code": "MTHU054768", + "display": "Immunologic Deficiency Syndromes" + }, + { + "system": "http://www.nlm.nih.gov/research/umls/nanda-i", + "code": "02515", + "display": "Immunologic Deficiency Syndromes" + }, + { + "system": "http://www.nlm.nih.gov/research/umls/lch_nw", + "code": "sh85064574", + "display": "Immunologic Deficiency Syndromes" + }, + { + "system": "http://www.nlm.nih.gov/research/umls/ccpss", + "code": "1007151", + "display": "Immunologic Deficiency Syndromes" + }, + { + "system": "http://hl7.org/fhir/sid/icpc-2", + "code": "MTHU037620", + "display": "Immunologic Deficiency Syndromes" + }, + { + "system": "http://www.nlm.nih.gov/research/umls/aod", + "code": "0000004832", + "display": "Immunologic Deficiency Syndromes" + } + ], + "text": "Immunologic Deficiency Syndromes" + }, + { + "coding": [ + { + "system": "http://hl7.org/fhir/administrative-gender", + "code": "Unknown", + "display": "Unknown" + } + ], + "text": "Unknown" + }, + { + "coding": [ + { + "system": "http://decades-value-set.ctm.microsoft.org", + "code": "0", + "display": "Age keyword for indexing - 0" + } + ], + "text": "Age keyword for indexing - 0" + }, + { + "coding": [ + { + "system": "http://decades-value-set.ctm.microsoft.org", + "code": "10", + "display": "Age keyword for indexing - 10" + } + ], + "text": "Age keyword for indexing - 10" + } + ], + "description": "This is a Phase II, open-label (all people involved know the identity of the assigned drug)\r\n and single arm study. The study will consist of a screening period of maximum 8 weeks, an\r\n initial treatment period of 48 weeks, a post week 48 treatment extension period of 4 years,\r\n and a 4 week follow-up period. A follow-up period will take place regardless of the presence\r\n of serious adverse events (SAEs) if patients withdraw early (ie, before Week 48) or if\r\n patients do not participate in the extension after Week 48; after Week 48, a 4-week follow-up\r\n visit is only required in case of ongoing (S)AEs at the final on treatment visit. The initial\r\n 48-week treatment period will be structured into 2 age Cohorts; Cohort 1 (Aged greater than\r\n or equal to [>=] 12 to less than [<] 18 years) and Cohort 2 (Children Aged >= 6 to < 12\r\n years) and each Cohort will have 2 parts. The first part of the trial (Part 1) is designed to\r\n evaluate the steady-state pharmacokinetic (PK) profile and the short-term safety and\r\n antiviral activity of rilpivirine 25 mg or adjusted dose once daily when administered in\r\n combination with 2 NRTIs. At Week 2/4, intensive PK will be done and an analysis together\r\n with short-term safety and antiviral activity will be reviewed by a data monitoring committee\r\n (DMC). For adolescents (Cohort 1) if the mean steady-state exposure in this first group of\r\n patients is comparable to that of the adult population (ie, is within 80-125 percentage of\r\n the mean exposure of the 25 mg once daily dose group in study, TMC278-C204), and the Week 2/4\r\n safety and antiviral activity results have been reviewed and deemed satisfactory by the DMC,\r\n the second part of the trial will start. The second part of the trial will evaluate long-term\r\n (48 weeks and 240 weeks) safety, efficacy, and pharmacokinetics of rilpivirine in combination\r\n with the background regimen of 2 NRTIs with a primary analysis time point at 24 weeks. For\r\n patients aged greater than or equal to (>=) 6 to less than (<) 12 years (Cohort 2), after\r\n being treated for at least 4 weeks and the Week 2 intensive PK and Week 4 safety and\r\n antiviral activity have been reviewed and results are satisfactory, recruitment in Part 1\r\n will resume and additional subjects will be enrolled to have at least 10 subjects in Part 1.\r\n Once an appropriate RPV dose has been selected, Part 1 of Cohort 2 will be considered\r\n complete and Part 2 will start. All patients from Part 1 will roll over in Part 2 and\r\n additional patients will be recruited in Part 2 to have at least 25 subjects (including those\r\n from Part 1) overall. In both cohorts of the trial, the ART will consist of rilpivirine 25 mg\r\n or adjusted dose once daily and an investigator-selected background regimen containing 2\r\n NRTIs. Patients safety will be monitored throughout the study and during the follow up\r\n visits.", + "enrollment": [ + { + "reference": "#2a43edc4-0000-0000-0000-000000000000", + "type": "Group" + } + ], + "period": { + "start": "2011-01", + "end": "2027-08" + }, + "arm": [ + { + "name": "Rilpivirine (TMC278)", + "type": { + "text": "Experimental" + }, + "description": "The patients will receive rilpivirine with 2 nucleoside/nucleotide reverse transcriptase inhibitors (NRTIs) as a background regimen in Cohort 1 [Aged greater than or equal to (> =) 12 to less than (<) 18 years] and Cohort 2 (children aged > = 6 to < 12 years). The NRTIs includes zidovudine, abacavir, or tenofovir disoproxil fumarate in combination with lamivudine or emtricitabine." + } + ] + } + ], + "registryFilters": [ + { + "studyTypes": [ + "interventional", + "observational" + ], + "recruitmentStatuses": [ + "recruiting", + "enrollingByInvitation" + ], + "phases": [ + "phase2", + "phase3" + ], + "purposes": [ + "diagnostic", + "prevention", + "basicScience" + ], + "sources": [ + "clinicaltrials.gov" + ], + "facilityLocations": [ + { + "city": "Basel", + "countryOrRegion": "Switzerland" + }, + { + "city": "Allschwil", + "countryOrRegion": "Switzerland" + } + ] + }, + { + "sponsors": [ + "Janssen" + ], + "sources": [ + "clinicaltrials.gov" + ], + "facilityAreas": [ + { + "type": "Feature", + "geometry": { + "type": "Point", + "coordinates": [ + 7.588576, + 47.559601 + ] + }, + "properties": { + "subType": "Circle", + "radius": 80000 + } + } + ] + }, + { + "ids": [ + "NCT04006015", + "NCT04545788", + "NCT04773711" + ], + "sources": [ + "clinicaltrials.gov" + ] + } + ] + } + } + } + }, + "responses": { + "202": { + "headers": { + "Operation-Location": "{endpoint}/health-insights/trial-matcher/jobs/{id}?api-version=2023-09-01-preview", + "Retry-After": "1" + }, + "body": { + "status": "notStarted", + "id": "a4d3d73e-2be3-4ca1-bd4f-66a5bdd19754" + } + } + } +} diff --git a/specification/ai/HealthInsights/HealthInsights.OpenAPI/examples/2023-09-01-preview/SuccessfulTrialMatcherResponse.json b/specification/ai/HealthInsights/HealthInsights.OpenAPI/examples/2023-09-01-preview/SuccessfulTrialMatcherResponse.json new file mode 100644 index 000000000000..eda21af93fa1 --- /dev/null +++ b/specification/ai/HealthInsights/HealthInsights.OpenAPI/examples/2023-09-01-preview/SuccessfulTrialMatcherResponse.json @@ -0,0 +1,113 @@ +{ + "operationId": "TrialMatcher_GetJob", + "title": "Gets the status and details of the Trial Matcher job.", + "parameters": { + "endpoint": "{endpoint}", + "api-version": "2023-09-01-preview", + "id": "a4d3d73e-2be3-4ca1-bd4f-66a5bdd19754" + }, + "responses": { + "200": { + "body": { + "id": "a4d3d73e-2be3-4ca1-bd4f-66a5bdd19754", + "createdDateTime": "2021-11-28T09:13:11.046Z", + "expirationDateTime": "2021-11-28T09:13:11.046Z", + "lastUpdateDateTime": "2021-11-28T09:13:11.046Z", + "status": "succeeded", + "result": { + "patientResults": [ + { + "patientId": "Patient ID Example 2", + "inferences": [ + { + "type": "trialEligibility", + "value": "Eligible", + "description": "SwEaTB - Diagnosing of Acute Tuberculosis", + "confidenceScore": 1, + "evidence": [ + { + "eligibilityCriteriaEvidence": "In-patients with acute tuberculosis", + "patientInfoEvidence": { + "system": "UMLS", + "code": "C0019046", + "name": "tuberculosis" + }, + "importance": 1 + } + ], + "clinicalTrialId": "NCT03667742", + "source": "clinicaltrials.gov", + "metadata": { + "phases": [ + "phase3" + ], + "studyType": "observational", + "recruitmentStatus": "recruiting", + "conditions": [ + "Tuberculosis" + ], + "sponsors": [ + "University Hospital, Basel, Switzerland" + ], + "contacts": [ + { + "name": "John Doe, PD Dr. Med", + "email": "John@contoso.com", + "phone": "+55-555-5555-55" + } + ], + "facilities": [ + { + "name": "University Hospital, Basel", + "city": "Basel", + "countryOrRegion": "Switzerland" + } + ] + } + }, + { + "type": "trialEligibility", + "value": "Ineligible", + "description": "Design of an Integrative Algorithm for Staging Tuberculosis (STAGE-TB)", + "confidenceScore": 1, + "evidence": [ + { + "eligibilityCriteriaEvidence": "negative for Quantiferon- TB Gold Plus Test or ELISpot", + "patientInfoEvidence": { + "system": "UMLS", + "code": "C0920508", + "name": "Enzyme-Linked Immunospot Assay", + "value": "30,000 PBMC cells per 10ul" + }, + "importance": 1 + } + ], + "clinicalTrialId": "NCT03691883", + "source": "clinicaltrials.gov" + } + ], + "neededClinicalInfo": [ + { + "system": "UMLS", + "code": "C4317078", + "name": "Mycobacterium Tuberculosis Measurement ", + "semanticType": "Laboratory Procedure", + "category": "EXAMINATION_NAME" + }, + { + "system": "UMLS", + "code": "C0008031", + "name": "Chest Pain", + "semanticType": "Sign or Symptom", + "category": "SYMPTOM_OR_SIGN" + } + ] + } + ], + "modelVersion": "2021-10-28", + "knowledgeGraphLastUpdateDate": "2021-11-26" + } + } + } + } +} diff --git a/specification/ai/HealthInsights/HealthInsights.OpenAPI/main.tsp b/specification/ai/HealthInsights/HealthInsights.OpenAPI/main.tsp index aa9c8633de0a..72910e1430cb 100644 --- a/specification/ai/HealthInsights/HealthInsights.OpenAPI/main.tsp +++ b/specification/ai/HealthInsights/HealthInsights.OpenAPI/main.tsp @@ -1,7 +1,11 @@ import "../HealthInsights.TrialMatcher/route.trialmatcher.tsp"; import "../HealthInsights.OncoPhenotype/route.oncophenotype.tsp"; - +import "../HealthInsights.RadiologyInsights/route.radiologyinsights.tsp"; +import "../HealthInsights.PatientTimeline/route.patienttimeline.tsp"; import "@typespec/rest"; import "@typespec/http"; -import "@typespec/versioning"; import "./service.tsp"; + +// FIXME: This is a workaround. Tracking issue: https://github.com/microsoft/typespec/issues/2826 +alias _ForceOrderOfReslutionExtension_ = Fhir.R4.Extension; +alias _ForceOrderOfReslutionCodeableConcept_ = Fhir.R4.CodeableConcept; diff --git a/specification/ai/HealthInsights/HealthInsights.OpenAPI/service.tsp b/specification/ai/HealthInsights/HealthInsights.OpenAPI/service.tsp index eca08aa8c346..9edabd705905 100644 --- a/specification/ai/HealthInsights/HealthInsights.OpenAPI/service.tsp +++ b/specification/ai/HealthInsights/HealthInsights.OpenAPI/service.tsp @@ -4,13 +4,13 @@ using TypeSpec.Http; using TypeSpec.Versioning; @service({ - title: "Azure Health Insights", + title: "Azure AI Health Insights", }) @versioned(ApiVersion) -@doc("Azure Health Insights provides an API that serves insight models, specific for Health & Life Sciences, that perform analysis and provide inferences to be used by a human.") +@doc("Azure AI Health Insights provides an API that serves insight models, specific for Health & Life Sciences, that perform analysis and provide inferences to be used by a human.") @server( - "{endpoint}/healthinsights", - "Azure Health Insights provides an API that serves insight models, specific for Health & Life Sciences, that perform analysis and provide inferences to be used by a human.", + "{endpoint}/health-insights", + "Azure AI Health Insights provides an API that serves insight models, specific for Health & Life Sciences, that perform analysis and provide inferences to be used by a human.", { @doc("Supported Cognitive Services endpoints (protocol and hostname, for example: https://westus2.api.cognitive.microsoft.com).") endpoint: url, @@ -21,6 +21,6 @@ namespace AzureHealthInsights; #suppress "@azure-tools/typespec-azure-core/documentation-required" "https://github.com/Azure/typespec-azure/issues/3107" enum ApiVersion { - @useDependency(Azure.Core.Versions.v1_0_Preview_1) - v2023_03_01_preview: "2023-03-01-preview", + @useDependency(Azure.Core.Versions.v1_0_Preview_2) + v2023_09_01_Preview: "2023-09-01-preview", } diff --git a/specification/ai/HealthInsights/HealthInsights.OpenAPI/tspconfig.yaml b/specification/ai/HealthInsights/HealthInsights.OpenAPI/tspconfig.yaml index f3a0b6a11722..930eac15de0e 100644 --- a/specification/ai/HealthInsights/HealthInsights.OpenAPI/tspconfig.yaml +++ b/specification/ai/HealthInsights/HealthInsights.OpenAPI/tspconfig.yaml @@ -1,12 +1,17 @@ -emit: [ - "@azure-tools/typespec-autorest", -] +parameters: + "service-dir": + default: "sdk/healthinsights" + "service-name": + default: "HealthInsights" +emit: + - "@azure-tools/typespec-autorest" linter: extends: - "@azure-tools/typespec-azure-core/all" options: "@azure-tools/typespec-autorest": - azure-resource-provider-folder: "data-plane" - emitter-output-dir: "{project-root}/../.." - output-file: "{azure-resource-provider-folder}/HealthInsights/{version-status}/{version}/openapi.json" - examples-directory: "examples" + azure-resource-provider-folder: "data-plane" + emitter-output-dir: "{project-root}/../.." + examples-directory: examples + omit-unreachable-types: true + output-file: "{azure-resource-provider-folder}/{service-name}/{version-status}/{version}/openapi.json" diff --git a/specification/ai/HealthInsights/HealthInsights.PatientTimeline/client.tsp b/specification/ai/HealthInsights/HealthInsights.PatientTimeline/client.tsp new file mode 100644 index 000000000000..2ebbdadee4dd --- /dev/null +++ b/specification/ai/HealthInsights/HealthInsights.PatientTimeline/client.tsp @@ -0,0 +1,88 @@ +import "@azure-tools/typespec-client-generator-core"; +import "./route.patienttimeline.tsp"; + +import "@typespec/rest"; +import "@typespec/http"; +import "../HealthInsights.OpenAPI/service.tsp"; + +using Azure.ClientGenerator.Core; + +@TypeSpec.Versioning.useDependency( + AzureHealthInsights.ApiVersion.v2023_09_01_Preview +) +namespace ClientForAzureHealthInsights; + +@client({ + name: "PatientTimelineClient", + service: AzureHealthInsights, +}) +interface PatientTimelineClient { + #suppress "@azure-tools/typespec-azure-core/long-running-polling-operation-required" "Polling through operation-location" + #suppress "@azure-tools/typespec-azure-core/use-standard-operations" "https://github.com/microsoft/typespec/issues/2037" + inferPatientTimeline is AzureHealthInsights.PatientTimeline.createJob; +} + +@@projectedName(Fhir.R4.Extension, "java", "Fhir_R4_Extension"); +@@projectedName(Fhir.R4.Extension, "csharp", "Fhir_R4_Extension"); +@@projectedName(Fhir.R4.Extendible, "java", "Fhir_R4_Extendible"); +@@projectedName(Fhir.R4.Extendible, "csharp", "Fhir_R4_Extendible"); +@@projectedName(Fhir.R4.Element, "java", "Fhir_R4_Element"); +@@projectedName(Fhir.R4.Element, "csharp", "Fhir_R4_Element"); +@@projectedName(Fhir.R4.Coding, "java", "Fhir_R4_Coding"); +@@projectedName(Fhir.R4.Coding, "csharp", "Fhir_R4_Coding"); +@@projectedName(Fhir.R4.CodeableConcept, "java", "Fhir_R4_CodeableConcept"); +@@projectedName(Fhir.R4.CodeableConcept, "csharp", "Fhir_R4_CodeableConcept"); +@@projectedName(Fhir.R4.Meta, "java", "Fhir_R4_Meta"); +@@projectedName(Fhir.R4.Meta, "csharp", "Fhir_R4_Meta"); +@@projectedName(Fhir.R4.Narrative, "java", "Fhir_R4_Narrative"); +@@projectedName(Fhir.R4.Narrative, "csharp", "Fhir_R4_Narrative"); +@@projectedName(Fhir.R4.Reference, "java", "Fhir_R4_Reference"); +@@projectedName(Fhir.R4.Reference, "csharp", "Fhir_R4_Reference"); +@@projectedName(Fhir.R4.Identifier, "java", "Fhir_R4_Identifier"); +@@projectedName(Fhir.R4.Identifier, "csharp", "Fhir_R4_Identifier"); +@@projectedName(Fhir.R4.Period, "java", "Fhir_R4_Period"); +@@projectedName(Fhir.R4.Period, "csharp", "Fhir_R4_Period"); +@@projectedName(Fhir.R4.Quantity, "java", "Fhir_R4_Quantity"); +@@projectedName(Fhir.R4.Quantity, "csharp", "Fhir_R4_Quantity"); +@@projectedName(Fhir.R4.Range, "java", "Fhir_R4_Range"); +@@projectedName(Fhir.R4.Range, "csharp", "Fhir_R4_Range"); +@@projectedName(Fhir.R4.Ratio, "java", "Fhir_R4_Ratio"); +@@projectedName(Fhir.R4.Ratio, "csharp", "Fhir_R4_Ratio"); +@@projectedName(Fhir.R4.Annotation, "java", "Fhir_R4_Annotation"); +@@projectedName(Fhir.R4.Annotation, "csharp", "Fhir_R4_Annotation"); +@@projectedName(Fhir.R4.SampledData, "java", "Fhir_R4_SampledData"); +@@projectedName(Fhir.R4.SampledData, "csharp", "Fhir_R4_SampledData"); +@@projectedName(Fhir.R4.ContactDetail, "java", "Fhir_R4_ContactDetail"); +@@projectedName(Fhir.R4.ContactDetail, "csharp", "Fhir_R4_ContactDetail"); +@@projectedName(Fhir.R4.ContactPoint, "java", "Fhir_R4_ContactPoint"); +@@projectedName(Fhir.R4.ContactPoint, "csharp", "Fhir_R4_ContactPoint"); +@@projectedName(Fhir.R4.Resource, "java", "Fhir_R4_Resource"); +@@projectedName(Fhir.R4.Resource, "csharp", "Fhir_R4_Resource"); +@@projectedName(Fhir.R4.DomainResource, "java", "Fhir_R4_DomainResource"); +@@projectedName(Fhir.R4.DomainResource, "csharp", "Fhir_R4_DomainResource"); +@@projectedName(Fhir.R4.Condition, "java", "Fhir_R4_Condition"); +@@projectedName(Fhir.R4.Condition, "csharp", "Fhir_R4_Condition"); +@@projectedName(Fhir.R4.ConditionStage, "java", "Fhir_R4_ConditionStage"); +@@projectedName(Fhir.R4.ConditionStage, "csharp", "Fhir_R4_ConditionStage"); +@@projectedName(Fhir.R4.Observation, "java", "Fhir_R4_Observation"); +@@projectedName(Fhir.R4.Observation, "csharp", "Fhir_R4_Observation"); +@@projectedName(Fhir.R4.ObservationReferenceRange, + "java", + "Fhir_R4_ObservationReferenceRange" +); +@@projectedName(Fhir.R4.ObservationReferenceRange, + "csharp", + "Fhir_R4_ObservationReferenceRange" +); +@@projectedName(Fhir.R4.ObservationComponent, + "java", + "Fhir_R4_ObservationComponent" +); +@@projectedName(Fhir.R4.ObservationComponent, + "csharp", + "Fhir_R4_ObservationComponent" +); +@@projectedName(Fhir.R4.ResearchStudy, "java", "Fhir_R4_ResearchStudy"); +@@projectedName(Fhir.R4.ResearchStudy, "csharp", "Fhir_R4_ResearchStudy"); +@@projectedName(AzureHealthInsights.PatientInfoSex, "client", "PatientSex"); +@@projectedName(AzureHealthInsights.PatientInfo, "client", "PatientDetails"); diff --git a/specification/ai/HealthInsights/HealthInsights.PatientTimeline/model.patienttimeline.tsp b/specification/ai/HealthInsights/HealthInsights.PatientTimeline/model.patienttimeline.tsp new file mode 100644 index 000000000000..962fee222946 --- /dev/null +++ b/specification/ai/HealthInsights/HealthInsights.PatientTimeline/model.patienttimeline.tsp @@ -0,0 +1,71 @@ +import "../HealthInsights.Common/model.common.request.tsp"; +import "../HealthInsights.Common/model.common.response.tsp"; +import "../HealthInsights.Common/model.common.shared.tsp"; +import "../HealthInsights.Common/model.common.fhir.elements.tsp"; +import "../HealthInsights.Common/model.common.fhir.resources.tsp"; + +using TypeSpec.Rest; + +namespace AzureHealthInsights; + +@doc("The body of the Patient Timeline request.") +model PatientTimelineData { + ...Request; + + @doc("Configuration affecting the Patient Timeline model's inference.") + configuration?: PatientTimelineModelConfiguration; +} + +@doc("Configuration affecting the Patient Timeline model's inference.") +model PatientTimelineModelConfiguration { + ...ModelConfiguration; +} + +@resource("patient-timeline/jobs") +@doc("The response for the Patient Timeline request.") +model PatientTimelineResult + is HealthInsightsOperationStatus; + +@doc("The inference results for the Patient Timeline request.") +model PatientTimelineInferenceResult { + @doc("Results for the patients given in the request.") + patientResults: PatientTimelinePatientResult[]; + + @doc("The version of the model used for inference, expressed as the model date.") + modelVersion: ModelVersion; +} + +@doc("The results of the model's work for a single patient.") +model PatientTimelinePatientResult { + @doc("The identifier given for the patient in the request.") + patientId: string; + + @doc("The model's inferences for the given patient.") + inferences: Array; +} + +@doc("An inference made by the Patient Timeline model regarding a patient.") +model PatientTimelineInference is Fhir.R4.Extendible { + @doc("The type of the Patient Timeline inference.") + type: PatientTimelineInferenceType; + + #suppress "@azure-tools/typespec-azure-core/bad-record-type" "model should have additionalProperties" + @doc(""" + FHIR 4.0 representation of the piece of clinical info. + additional dependent resources maybe contained (e.g. MedicationStatement may contain Medication) + -- In the SDK we will have custom mapping to map this type to JsonObject + """) + resource?: Fhir.R4.DomainResource; + + @doc("Time range relevant to this Timeline inference.") + period?: TimePeriod; +} + +@doc("The type of the Patient Timeline inference.") +enum PatientTimelineInferenceType { + @doc("The inference is a timeline event.") + TimelineEvent: "timelineEvent", + + @doc("The inference is a summary item.") + SummaryItem: "summaryItem", +} diff --git a/specification/ai/HealthInsights/HealthInsights.PatientTimeline/route.patienttimeline.tsp b/specification/ai/HealthInsights/HealthInsights.PatientTimeline/route.patienttimeline.tsp new file mode 100644 index 000000000000..16b536ce4bf3 --- /dev/null +++ b/specification/ai/HealthInsights/HealthInsights.PatientTimeline/route.patienttimeline.tsp @@ -0,0 +1,35 @@ +import "@azure-tools/typespec-azure-core"; +import "@typespec/rest"; +import "@typespec/http"; + +import "./model.patienttimeline.tsp"; +import "../HealthInsights.Common/primitives.tsp"; + +using Azure.Core; +using TypeSpec.Rest; +using TypeSpec.Http; + +namespace AzureHealthInsights; + +interface PatientTimeline { + #suppress "@azure-tools/typespec-azure-core/no-rpc-path-params" "Service uses a jobId in the path" + @summary("Get Patient Timeline job details") + @tag("PatientTimeline") + @doc("Gets the status and details of the Patient Timeline job.") + @get + @route("/patient-timeline/jobs/{id}") + getJob is HealthInsightsLongRunningPollOperation; + + #suppress "@azure-tools/typespec-azure-core/long-running-polling-operation-required" "Polling through operation-location" + #suppress "@azure-tools/typespec-azure-core/use-standard-operations" "There is no long-running RPC template in Azure.Core" + @summary("Create Patient Timeline job") + @tag("PatientTimeline") + @doc("Creates a Patient Timeline job with the given request body.") + @pollingOperation(PatientTimeline.getJob) + @route("/patient-timeline/jobs") + createJob is HealthInsightsLongRunningRpcOperation< + PatientTimelineData, + PatientTimelineResult, + PatientTimelineInferenceResult + >; +} diff --git a/specification/ai/HealthInsights/HealthInsights.PatientTimeline/tspconfig.yaml b/specification/ai/HealthInsights/HealthInsights.PatientTimeline/tspconfig.yaml new file mode 100644 index 000000000000..498e3b71b9e3 --- /dev/null +++ b/specification/ai/HealthInsights/HealthInsights.PatientTimeline/tspconfig.yaml @@ -0,0 +1,51 @@ +parameters: + "service-dir": + default: "sdk/healthinsights" + "service-name": + default: "HealthInsights" + "dependencies": + "additionalDirectories": + - "specification/ai/HealthInsights/HealthInsights.Common/" + - "specification/ai/HealthInsights/HealthInsights.OpenAPI/" + default: "" + "python-sdk-folder": + default: "{project-root}/azure-sdk-for-python/" + "java-sdk-folder": + default: "{project-root}/azure-sdk-for-java/" + "js-sdk-folder": + default: "{project-root}/azure-sdk-for-js/" + "csharp-sdk-folder": + default: "{project-root}/azure-sdk-for-net/" + "service-directory-name": + default: "healthinsights" +emit: + - "@azure-tools/typespec-autorest" +linter: + extends: + - "@azure-tools/typespec-azure-core/all" +options: + "@azure-tools/typespec-python": + package-pprint-name: '"Azure Health Insights - Patient Timeline"' + package-mode: "dataplane" + package-version: 1.0.0b1 + package-dir: "azure-healthinsights-patienttimeline" + package-name: "{package-dir}" + emitter-output-dir: "{python-sdk-folder}/sdk/{service-directory-name}/{package-name}" + "@azure-tools/typespec-java": + package-dir: "azure-healthinsights-patienttimeline" + namespace: com.azure.health.insights.patienttimeline + partial-update: true + emitter-output-dir: "{java-sdk-folder}/sdk/{service-directory-name}/azure-health-insights-patienttimeline" + "@azure-tools/typespec-csharp": + save-inputs: false + clear-output-folder: true + package-dir: "Azure.Health.Insights.PatientTimeline" + namespace: "{package-dir}" + model-namespace: false + "@azure-tools/typespec-ts": + package-dir: "azurehealthinsightspatienttimeline-rest" + emitter-output-dir: "{js-sdk-folder}/sdk/{service-directory-name}/health-insights-patienttimeline-rest" + generateMetadata: true + generateTest: true + packageDetails: + name: "@azure-rest/health-insights-patienttimeline" diff --git a/specification/ai/HealthInsights/HealthInsights.RadiologyInsights/client.tsp b/specification/ai/HealthInsights/HealthInsights.RadiologyInsights/client.tsp new file mode 100644 index 000000000000..d19844386f4a --- /dev/null +++ b/specification/ai/HealthInsights/HealthInsights.RadiologyInsights/client.tsp @@ -0,0 +1,88 @@ +import "@azure-tools/typespec-client-generator-core"; +import "./route.radiologyinsights.tsp"; + +import "@typespec/rest"; +import "@typespec/http"; +import "../HealthInsights.OpenAPI/service.tsp"; + +using Azure.ClientGenerator.Core; + +@TypeSpec.Versioning.useDependency( + AzureHealthInsights.ApiVersion.v2023_09_01_Preview +) +namespace ClientForAzureHealthInsights; + +@client({ + name: "RadiologyInsightsClient", + service: AzureHealthInsights, +}) +interface RadiologyInsightsClient { + #suppress "@azure-tools/typespec-azure-core/long-running-polling-operation-required" "Polling through operation-location" + #suppress "@azure-tools/typespec-azure-core/use-standard-operations" "https://github.com/microsoft/typespec/issues/2037" + inferRadiologyInsights is AzureHealthInsights.RadiologyInsights.createJob; +} + +@@projectedName(Fhir.R4.Extension, "java", "Fhir_R4_Extension"); +@@projectedName(Fhir.R4.Extension, "csharp", "Fhir_R4_Extension"); +@@projectedName(Fhir.R4.Extendible, "java", "Fhir_R4_Extendible"); +@@projectedName(Fhir.R4.Extendible, "csharp", "Fhir_R4_Extendible"); +@@projectedName(Fhir.R4.Element, "java", "Fhir_R4_Element"); +@@projectedName(Fhir.R4.Element, "csharp", "Fhir_R4_Element"); +@@projectedName(Fhir.R4.Coding, "java", "Fhir_R4_Coding"); +@@projectedName(Fhir.R4.Coding, "csharp", "Fhir_R4_Coding"); +@@projectedName(Fhir.R4.CodeableConcept, "java", "Fhir_R4_CodeableConcept"); +@@projectedName(Fhir.R4.CodeableConcept, "csharp", "Fhir_R4_CodeableConcept"); +@@projectedName(Fhir.R4.Meta, "java", "Fhir_R4_Meta"); +@@projectedName(Fhir.R4.Meta, "csharp", "Fhir_R4_Meta"); +@@projectedName(Fhir.R4.Narrative, "java", "Fhir_R4_Narrative"); +@@projectedName(Fhir.R4.Narrative, "csharp", "Fhir_R4_Narrative"); +@@projectedName(Fhir.R4.Reference, "java", "Fhir_R4_Reference"); +@@projectedName(Fhir.R4.Reference, "csharp", "Fhir_R4_Reference"); +@@projectedName(Fhir.R4.Identifier, "java", "Fhir_R4_Identifier"); +@@projectedName(Fhir.R4.Identifier, "csharp", "Fhir_R4_Identifier"); +@@projectedName(Fhir.R4.Period, "java", "Fhir_R4_Period"); +@@projectedName(Fhir.R4.Period, "csharp", "Fhir_R4_Period"); +@@projectedName(Fhir.R4.Quantity, "java", "Fhir_R4_Quantity"); +@@projectedName(Fhir.R4.Quantity, "csharp", "Fhir_R4_Quantity"); +@@projectedName(Fhir.R4.Range, "java", "Fhir_R4_Range"); +@@projectedName(Fhir.R4.Range, "csharp", "Fhir_R4_Range"); +@@projectedName(Fhir.R4.Ratio, "java", "Fhir_R4_Ratio"); +@@projectedName(Fhir.R4.Ratio, "csharp", "Fhir_R4_Ratio"); +@@projectedName(Fhir.R4.Annotation, "java", "Fhir_R4_Annotation"); +@@projectedName(Fhir.R4.Annotation, "csharp", "Fhir_R4_Annotation"); +@@projectedName(Fhir.R4.SampledData, "java", "Fhir_R4_SampledData"); +@@projectedName(Fhir.R4.SampledData, "csharp", "Fhir_R4_SampledData"); +@@projectedName(Fhir.R4.ContactDetail, "java", "Fhir_R4_ContactDetail"); +@@projectedName(Fhir.R4.ContactDetail, "csharp", "Fhir_R4_ContactDetail"); +@@projectedName(Fhir.R4.ContactPoint, "java", "Fhir_R4_ContactPoint"); +@@projectedName(Fhir.R4.ContactPoint, "csharp", "Fhir_R4_ContactPoint"); +@@projectedName(Fhir.R4.Resource, "java", "Fhir_R4_Resource"); +@@projectedName(Fhir.R4.Resource, "csharp", "Fhir_R4_Resource"); +@@projectedName(Fhir.R4.DomainResource, "java", "Fhir_R4_DomainResource"); +@@projectedName(Fhir.R4.DomainResource, "csharp", "Fhir_R4_DomainResource"); +@@projectedName(Fhir.R4.Condition, "java", "Fhir_R4_Condition"); +@@projectedName(Fhir.R4.Condition, "csharp", "Fhir_R4_Condition"); +@@projectedName(Fhir.R4.ConditionStage, "java", "Fhir_R4_ConditionStage"); +@@projectedName(Fhir.R4.ConditionStage, "csharp", "Fhir_R4_ConditionStage"); +@@projectedName(Fhir.R4.Observation, "java", "Fhir_R4_Observation"); +@@projectedName(Fhir.R4.Observation, "csharp", "Fhir_R4_Observation"); +@@projectedName(Fhir.R4.ObservationReferenceRange, + "java", + "Fhir_R4_ObservationReferenceRange" +); +@@projectedName(Fhir.R4.ObservationReferenceRange, + "csharp", + "Fhir_R4_ObservationReferenceRange" +); +@@projectedName(Fhir.R4.ObservationComponent, + "java", + "Fhir_R4_ObservationComponent" +); +@@projectedName(Fhir.R4.ObservationComponent, + "csharp", + "Fhir_R4_ObservationComponent" +); +@@projectedName(Fhir.R4.ResearchStudy, "java", "Fhir_R4_ResearchStudy"); +@@projectedName(Fhir.R4.ResearchStudy, "csharp", "Fhir_R4_ResearchStudy"); +@@projectedName(AzureHealthInsights.PatientInfoSex, "client", "PatientSex"); +@@projectedName(AzureHealthInsights.PatientInfo, "client", "PatientDetails"); diff --git a/specification/ai/HealthInsights/HealthInsights.RadiologyInsights/model.radiologyinsights.tsp b/specification/ai/HealthInsights/HealthInsights.RadiologyInsights/model.radiologyinsights.tsp new file mode 100644 index 000000000000..757a3c9355e3 --- /dev/null +++ b/specification/ai/HealthInsights/HealthInsights.RadiologyInsights/model.radiologyinsights.tsp @@ -0,0 +1,311 @@ +import "../HealthInsights.Common/model.common.request.tsp"; +import "../HealthInsights.Common/model.common.response.tsp"; +import "../HealthInsights.Common/model.common.shared.tsp"; +import "../HealthInsights.Common/model.common.fhir.elements.tsp"; +import "./model.radiologyinsights.valuesets.tsp"; + +using TypeSpec.Rest; + +namespace AzureHealthInsights; + +@doc("Contains the list of patients, and configuration data.") +model RadiologyInsightsData { + ...Request; + + @doc("Configuration affecting the Radiology Insights model's inference.") + configuration?: RadiologyInsightsModelConfiguration; +} + +@doc("Configuration affecting the Radiology Insights model's inference.") +model RadiologyInsightsModelConfiguration { + ...ModelConfiguration; + + @doc("This is a list of inference types to be inferred for the current request. It could be used if only part of the Radiology Insights inferences are required. If this list is omitted or empty, the model will return all the inference types.") + inferenceTypes?: RadiologyInsightsInferenceType[]; + + @doc("Options regarding follow up recommendation inferences and finding inferences.") + inferenceOptions?: RadiologyInsightsInferenceOptions; + + @doc("Local for the model to use. If not specified, the model will use the default locale.") + locale?: string; +} + +@doc("Options regarding follow up recommendation inferences and finding inferences.") +model RadiologyInsightsInferenceOptions { + @doc("Follow-up recommendation options.") + followupRecommendationOptions?: FollowupRecommendationOptions; + + @doc("Finding options.") + findingOptions?: FindingOptions; +} + +@doc("Follow-up recommendation options.") +model FollowupRecommendationOptions { + @doc("Include/Exclude follow-up recommendations without a specific radiology procedure. Default is false.") + includeRecommendationsWithNoSpecifiedModality?: boolean; + + @doc("Include/Exclude follow-up recommendations in references to a guideline or article. Default is false.") + includeRecommendationsInReferences?: boolean; + + @doc("If this is true, provide one or more sentences as evidence for the recommendation, next to the token evidence. The start and end positions of these sentences will be put in an extension with url 'modality_sentences'. Default is false.") + provideFocusedSentenceEvidence?: boolean; +} + +@doc("Finding options.") +model FindingOptions { + @doc("If this is true, provide the sentence that contains the first token of the finding's clinical indicator (i.e. the medical problem), if there is one. This sentence is provided as an extension with url 'ci_sentence', next to the token evidence. Default is false.") + provideFocusedSentenceEvidence?: boolean; +} + +@resource("radiology-insights/jobs") +@doc("Response for the Radiology Insights request.") +model RadiologyInsightsResult + is HealthInsightsOperationStatus; + +@doc("The inference results for the Radiology Insights request. If field 'status' has value 'succeeded', then field 'result' will contain an instance of RadiologyInsightsInferenceResult.") +model RadiologyInsightsInferenceResult { + @doc("Results for the patients given in the request.") + patientResults: RadiologyInsightsPatientResult[]; + + @doc("The version of the model used for inference, expressed as the model date.") + modelVersion: ModelVersion; +} + +@doc("Results of the model's work for a single patient.") +model RadiologyInsightsPatientResult { + @doc("Identifier given for the patient in the request.") + patientId: string; + + @doc("The model's inferences for the given patient.") + inferences: RadiologyInsightsInference[]; +} + +@doc(""" +An inference made by the Radiology Insights model regarding a patient. + - AgeMismatch + - SexMismatch + - LateralityDiscrepancy + - CompleteOrderDiscrepancy + - LimitedOrderDiscrepancy + - Finding + - CriticalResult + - FollowupRecommendation + - RadiologyProcedure + - FollowupCommunication +""") +@discriminator("kind") +model RadiologyInsightsInference is Fhir.R4.Extendible; + +@doc("A notification for age mismatch is displayed when the age mentioned in a document for a specific patient does not match the age specified in the patient information.") +model AgeMismatchInference extends RadiologyInsightsInference { + @doc("Inference type.") + kind: RadiologyInsightsInferenceType.AgeMismatch; +} + +@doc("A notification for a sex mismatch is displayed when the gender, personal pronouns, gender-related body parts, or gender-related procedures mentioned in a patient's clinical document are either inconsistent or do not match the gender specified in the patient information.") +model SexMismatchInference extends RadiologyInsightsInference { + @doc("Inference type.") + kind: RadiologyInsightsInferenceType.SexMismatch; + + @doc("Sex indication : SNOMED CT code for gender finding.") + sexIndication: Fhir.R4.CodeableConcept; +} + +@doc("A laterality mismatch occurs when there is a discrepancy between the clinical documentation and the ordered procedure (orderLateralityMismatch), a contradiction within the clinical document (textLateralityContradiction), or when no laterality is mentioned (textLateralityMissing).") +model LateralityDiscrepancyInference extends RadiologyInsightsInference { + @doc("Inference type.") + kind: RadiologyInsightsInferenceType.LateralityDiscrepancy; + + @doc("Laterality indication : SNOMED CT code for laterality qualifier value.") + lateralityIndication?: Fhir.R4.CodeableConcept; + + @doc("Mismatch type : orderLateralityMismatch, textLateralityContradiction, textLateralityMissing.") + discrepancyType: LateralityDiscrepancyType; +} + +@doc("A complete order discrepancy is shown when one or more body parts and/or measurements that should be in the document (because there is a complete order) are not present.") +model CompleteOrderDiscrepancyInference extends RadiologyInsightsInference { + @doc("Inference type.") + kind: RadiologyInsightsInferenceType.CompleteOrderDiscrepancy; + + @doc("Order type : CPT ultrasound complete code for abdomen, retroperitoneal, pelvis or breast.") + orderType: Fhir.R4.CodeableConcept; + + @doc("List of missing body parts required by a complete order : SNOMED CT codes.") + missingBodyParts?: Array; + + @doc("List of missing body parts that require measurement by a complete order : SNOMED CT codes.") + missingBodyPartMeasurements?: Array; +} + +@doc("A limited order discrepancy occurs when there is a limited order, but all body parts and measurements that are needed for a complete order are present in the document.") +model LimitedOrderDiscrepancyInference extends RadiologyInsightsInference { + @doc("Inference type.") + kind: RadiologyInsightsInferenceType.LimitedOrderDiscrepancy; + + @doc("Order type : CPT ultrasound complete code for abdomen, retroperitoneal, pelvis or breast.") + orderType: Fhir.R4.CodeableConcept; + + @doc("List of body parts found in the document : SNOMED CT codes.") + presentBodyParts?: Array; + + @doc("List of body parts that are measured according to the document : SNOMED CT codes.") + presentBodyPartMeasurements?: Array; +} + +@doc("Findings in a radiology report typically describe abnormalities, lesions, or other notable observations related to the anatomy or pathology of the imaged area.") +model FindingInference extends RadiologyInsightsInference { + @doc("Inference type.") + kind: RadiologyInsightsInferenceType.Finding; + + @doc("Finding data : contains extensions, fields and components linked with the finding.") + finding: Fhir.R4.Observation; +} + +@doc("Critical results refer to findings of utmost importance that may require timely attention due to their potential impact on patient care.") +model CriticalResultInference extends RadiologyInsightsInference { + @doc("Inference type.") + kind: RadiologyInsightsInferenceType.CriticalResult; + + @doc("The complete Critical Result, as outlined below, will be reused for the recommendation.") + result: CriticalResult; +} + +@doc("Critical Result consists of two properties.") +model CriticalResult { + @doc("Description : medical problem.") + description: string; + + @doc("Finding linked to the critical result.") + finding?: Fhir.R4.Observation; +} + +@doc("Radiology procedures are the specific imaging studies or examinations ordered for the patient, extracted from the document information and text.") +model RadiologyProcedureInference extends RadiologyInsightsInference { + @doc("Inference type.") + kind: RadiologyInsightsInferenceType.RadiologyProcedure; + + @doc("LOINC codes for the procedure.") + procedureCodes?: Array; + + @minItems(1) + @doc("Imaging procedures.") + imagingProcedures: Array; + + @doc("Ordered procedure information from the document information or text.") + orderedProcedure: OrderedProcedure; +} + +@doc("Follow-up recommendations offer guidance to healthcare providers on managing and monitoring patients based on the findings of imaging studies.") +model FollowupRecommendationInference extends RadiologyInsightsInference { + @doc("Inference type.") + kind: RadiologyInsightsInferenceType.FollowupRecommendation; + + @doc("Date and time are displayed when the procedure is recommended to be done at a specific point in time.") + effectiveDateTime?: Fhir.R4.fhirDateTime; + + @doc("The period is shown if a specific period is mentioned, with a start and end date-time.") + effectivePeriod?: Fhir.R4.Period; + + @doc("Findings related to the recommendation.") + @minItems(1) + findings?: Array; + + @doc("The conditional value indicates whether or not the sentence containing the recommendation includes a conditional statement. Keywords for conditional statements include 'if', 'when', 'unless', and so on.") + isConditional: boolean; + + @doc("The option value indicates whether or not the sentence containing the recommendation includes an optional statement. Keywords for optional statements include 'recommend', 'consider', and so on.") + isOption: boolean; + + @doc("The guideline value indicates whether or not the recommendation is part of a guideline section that compiles all recommendations applicable to various findings.") + isGuideline: boolean; + + @doc("Hedging refers to ambiguous, vague or imprecise language within the sentence of the recommendation. Keywords for hedging are 'can be','may be',and so on.") + isHedging: boolean; + + @doc("The procedure recommendation can be a generic procedure or an imaging procedure.") + recommendedProcedure: ProcedureRecommendation; +} + +@doc("The procedure recommendation can be a generic procedure or an imaging procedure.") +@discriminator("kind") +model ProcedureRecommendation {} + +@doc("Generic procedure information.") +model GenericProcedureRecommendation extends ProcedureRecommendation { + @doc("Procedure type : generic.") + kind: "genericProcedureRecommendation"; + + @doc("Procedure modality : SNOMED CT code.") + code: Fhir.R4.CodeableConcept; + + @doc("Procedure description : MANAGEMENT PROCEDURE (PROCEDURE) or CONSULTATION (PROCEDURE) based on SNOMED CT.") + description?: string; +} + +@doc("Imaging procedures.") +model ImagingProcedureRecommendation extends ProcedureRecommendation { + @doc("Procedure type : imaging.") + kind: "imagingProcedureRecommendation"; + + @doc("LOINC codes for the procedure.") + procedureCodes?: Array; + + @minItems(1) + @doc("Imaging procedures.") + imagingProcedures: Array; +} + +@doc("Imaging procedure.") +model ImagingProcedure { + @doc("Modality : SNOMED CT code.") + modality: Fhir.R4.CodeableConcept; + + @doc("Anatomy : SNOMED CT code.") + anatomy: Fhir.R4.CodeableConcept; + + @doc("Laterality : SNOMED CT code.") + laterality?: Fhir.R4.CodeableConcept; + + @doc("Contrast : see RadiologyCodeWithTypes (below).") + contrast?: RadiologyCodeWithTypes; + + @doc("View : see RadiologyCodeWithTypes (below).") + view?: RadiologyCodeWithTypes; +} + +@doc("Radiology code with types : used in imaging procedure recommendation for contrast and view.") +model RadiologyCodeWithTypes { + @doc("The SNOMED CT code indicates whether imaging was conducted with or without contrast in the case of contrast, and in the case of views, it denotes the number of views.") + code: Fhir.R4.CodeableConcept; + + @doc("The collection of types will indicate the contrast substance used in the case of contrast and, in the case of views, it will specify the types of views, such as lateral and frontal, etc.") + types: Array; +} + +@doc("Finding reference for recommendation.") +model RecommendationFinding is Fhir.R4.Extendible { + @doc("Finding linked to a recommendation.") + finding?: Fhir.R4.Observation; + + @doc("Critical result linked to a recommendation.") + criticalFinding?: CriticalResult; + + @doc("Recommendation finding status.") + recommendationFindingStatus: RecommendationFindingStatusType; +} + +@doc("Follow-up communication involves the exchange of important information, recommendations, or updates between radiologists and other healthcare professionals involved in a patient's care.") +model FollowupCommunicationInference extends RadiologyInsightsInference { + @doc("Inference type.") + kind: RadiologyInsightsInferenceType.FollowupCommunication; + + @doc("Communication date and time.") + dateTime?: Array; + + @doc("Recipient of the communication.") + recipient?: Array; + + @doc("Communication was acknowledged.") + wasAcknowledged: boolean; +} diff --git a/specification/ai/HealthInsights/HealthInsights.RadiologyInsights/model.radiologyinsights.valuesets.tsp b/specification/ai/HealthInsights/HealthInsights.RadiologyInsights/model.radiologyinsights.valuesets.tsp new file mode 100644 index 000000000000..2e3b3a24b88b --- /dev/null +++ b/specification/ai/HealthInsights/HealthInsights.RadiologyInsights/model.radiologyinsights.valuesets.tsp @@ -0,0 +1,177 @@ +import "../HealthInsights.Common/model.common.fhir.elements.tsp"; + +namespace AzureHealthInsights; + +@doc("A Radiology Insights inference types.") +enum RadiologyInsightsInferenceType { + @doc("Age mismatch inference type") + AgeMismatch: "ageMismatch", + + @doc("Laterality discrepancy inference type") + LateralityDiscrepancy: "lateralityDiscrepancy", + + @doc("Sex mismatch inference type") + SexMismatch: "sexMismatch", + + @doc("Complete order discrepancy inference type") + CompleteOrderDiscrepancy: "completeOrderDiscrepancy", + + @doc("Limited order discrepancy inference type") + LimitedOrderDiscrepancy: "limitedOrderDiscrepancy", + + @doc("Finding inference type") + Finding: "finding", + + @doc("Critical finding inference type") + CriticalResult: "criticalResult", + + @doc("Recommendation inference type") + FollowupRecommendation: "followupRecommendation", + + @doc("Followup Communication inference type") + FollowupCommunication: "followupCommunication", + + @doc("Radiology Procedure inference type") + RadiologyProcedure: "radiologyProcedure", +} + +@doc("Laterality discrepancy type") +enum LateralityDiscrepancyType { + @doc("Mismatch between order and text") + OrderLateralityMismatch: "orderLateralityMismatch", + + @doc("Contradiction in text") + TextLateralityContradiction: "textLateralityContradiction", + + @doc("Missing laterality in text") + TextLateralityMissing: "textLateralityMissing", +} + +@doc("consider using ClinicalCodeableConcept system: http://unitsofmeasure.org") +enum MeasureUnitType { + @doc("Undefined measure unit type") + Undefined: "undefined", + + @doc("Rate measure unit type") + Rate: "rate", + + @doc("Concentration measure unit type") + Concentration: "concentration", + + @doc("Mass measure unit type") + Mass: "mass", + + @doc("Time measure unit type") + Time: "time", + + @doc("Length measure unit type") + Length: "length", + + @doc("Area measure unit type") + Area: "area", + + @doc("Volume measure unit type") + Volume: "volume", + + @doc("Amount measure unit type") + Amount: "amount", + + @doc("Percentage measure unit type") + Percentage: "percentage", + + @doc("Pressure measure unit type") + Pressure: "pressure", + + @doc("Temperature measure unit type") + Temperature: "temperature", + + @doc("Velocity measure unit type") + Velocity: "velocity", + + @doc("Angle measure unit type") + Angle: "angle", + + @doc("Energy measure unit type") + Energy: "energy", + + @doc("Radioactivity measure unit type") + Radioactivity: "radioactivity", +} + +@doc("Medical Professional Type") +enum MedicalProfessionalType { + @doc("Unknown medical professional type") + Unknown: "unknown", + + @doc("Doctor medical professional type") + Doctor: "doctor", + + @doc("Nurse medical professional type") + Nurse: "nurse", + + @doc("Technician medical professional type") + Midwife: "midwife", + + @doc("Technician medical professional type") + PhysicianAssistant: "physicianAssistant", +} + +@doc("Laterality type") +enum LateralityType { + @doc("Left laterality type") + Left: "left", + + @doc("Right laterality type") + Right: "right", + + @doc("Right and left laterality type") + Bilateral: "bilateral", + + @doc("Unilateral laterality type") + Unilateral: "unilateral", +} + +@doc("Recommendation finding status") +enum RecommendationFindingStatusType { + @doc("Present finding status") + Present: "present", + + @doc("Differential finding status") + Differential: "differential", + + @doc("Rule out finding status") + RuleOut: "ruleOut", + + @doc("Conditional finding status") + Conditional: "conditional", +} + +@doc(""" +DiseaseCourseType value set system url = http://github.com/Azure/HealthInsights/RadiologyInsights/ValueSet/condition-course +The below values can be used for binding in DiseaseCourseExtension.valueCodeableConcept +""") +enum DiseaseCourseType { + @doc("Acute") + Acute: "acute", + + @doc("Chronic") + Chronic: "chronic", + + @doc("Acute on chronic") + AcuteOnChronic: "acuteOnChronic", + + @doc("Intermittent") + Intermittent: "intermittent", + + @doc("Relapsing") + Relapsing: "relapsing", + + @doc("Prolonged") + Prolonged: "prolonged", + + @doc("Paroxysmal") + Paroxysmal: "paroxysmal", + + @doc("Seasonal course") + SeasonalCourse: "seasonalCourse", +} diff --git a/specification/ai/HealthInsights/HealthInsights.RadiologyInsights/route.radiologyinsights.tsp b/specification/ai/HealthInsights/HealthInsights.RadiologyInsights/route.radiologyinsights.tsp new file mode 100644 index 000000000000..9b7dbf515b2a --- /dev/null +++ b/specification/ai/HealthInsights/HealthInsights.RadiologyInsights/route.radiologyinsights.tsp @@ -0,0 +1,36 @@ +import "@azure-tools/typespec-azure-core"; +import "@typespec/rest"; +import "@typespec/http"; + +import "./model.radiologyinsights.tsp"; +import "./model.radiologyinsights.valuesets.tsp"; +import "../HealthInsights.Common/primitives.tsp"; + +using Azure.Core; +using TypeSpec.Rest; +using TypeSpec.Http; + +namespace AzureHealthInsights; + +interface RadiologyInsights { + #suppress "@azure-tools/typespec-azure-core/no-rpc-path-params" "Service uses a jobId in the path" + @summary("Get Radiology Insights job details") + @tag("RadiologyInsights") + @doc("Gets the status and details of the Radiology Insights job.") + @get + @route("/radiology-insights/jobs/{id}") + getJob is HealthInsightsLongRunningPollOperation; + + #suppress "@azure-tools/typespec-azure-core/long-running-polling-operation-required" "Polling through operation-location" + #suppress "@azure-tools/typespec-azure-core/use-standard-operations" "There is no long-running RPC template in Azure.Core" + @summary("Create Radiology Insights job") + @tag("RadiologyInsights") + @doc("Creates a Radiology Insights job with the given request body.") + @pollingOperation(RadiologyInsights.getJob) + @route("/radiology-insights/jobs") + createJob is HealthInsightsLongRunningRpcOperation< + RadiologyInsightsData, + RadiologyInsightsResult, + RadiologyInsightsInferenceResult + >; +} diff --git a/specification/ai/HealthInsights/HealthInsights.RadiologyInsights/tspconfig.yaml b/specification/ai/HealthInsights/HealthInsights.RadiologyInsights/tspconfig.yaml new file mode 100644 index 000000000000..84f55a41e6f6 --- /dev/null +++ b/specification/ai/HealthInsights/HealthInsights.RadiologyInsights/tspconfig.yaml @@ -0,0 +1,52 @@ +parameters: + "service-dir": + default: "sdk/healthinsights" + "service-name": + default: "HealthInsights" + "dependencies": + "additionalDirectories": + - "specification/ai/HealthInsights/HealthInsights.Common/" + - "specification/ai/HealthInsights/HealthInsights.OpenAPI/" + default: "" + "python-sdk-folder": + default: "{project-root}/azure-sdk-for-python/" + "java-sdk-folder": + default: "{project-root}/azure-sdk-for-java/" + "js-sdk-folder": + default: "{project-root}/azure-sdk-for-js/" + "csharp-sdk-folder": + default: "{project-root}/azure-sdk-for-net/" + "service-directory-name": + default: "healthinsights" +emit: + - "@azure-tools/typespec-autorest" +linter: + extends: + - "@azure-tools/typespec-azure-core/all" +options: + "@azure-tools/typespec-python": + package-pprint-name: '"Azure Health Insights - Radiology Insights"' + package-mode: "dataplane" + package-version: 1.0.0b1 + package-dir: "azure-healthinsights-radiologyinsights" + package-name: "{package-dir}" + emitter-output-dir: "{python-sdk-folder}/sdk/{service-directory-name}/{package-name}" + "@azure-tools/typespec-java": + package-dir: "azure-healthinsights-radiologyinsights" + namespace: com.azure.health.insights.radiologyinsights + service-name: "RadiologyInsights" + partial-update: true + emitter-output-dir: "{java-sdk-folder}/sdk/{service-directory-name}/azure-health-insights-radiologyinsights" + "@azure-tools/typespec-csharp": + save-inputs: false + clear-output-folder: true + package-dir: "Azure.Health.Insights.RadiologyInsights" + namespace: "{package-dir}" + model-namespace: false + "@azure-tools/typespec-ts": + package-dir: "azurehealthinsightsradiologyinsights-rest" + emitter-output-dir: "{js-sdk-folder}/sdk/{service-directory-name}/health-insights-cancerprofiling-rest" + generateMetadata: true + generateTest: true + packageDetails: + name: "@azure-rest/health-insights-radiologyinsights" diff --git a/specification/ai/HealthInsights/HealthInsights.TrialMatcher/client.tsp b/specification/ai/HealthInsights/HealthInsights.TrialMatcher/client.tsp index 516b22dfdcc4..7f3e42e0e051 100644 --- a/specification/ai/HealthInsights/HealthInsights.TrialMatcher/client.tsp +++ b/specification/ai/HealthInsights/HealthInsights.TrialMatcher/client.tsp @@ -3,14 +3,12 @@ import "./route.trialmatcher.tsp"; import "@typespec/rest"; import "@typespec/http"; -import "@typespec/versioning"; import "../HealthInsights.OpenAPI/service.tsp"; using Azure.ClientGenerator.Core; -@TypeSpec.Versioning.useDependency(Azure.Core.Versions.v1_0_Preview_1) @TypeSpec.Versioning.useDependency( - AzureHealthInsights.ApiVersion.v2023_03_01_preview + AzureHealthInsights.ApiVersion.v2023_09_01_Preview ) namespace ClientForAzureHealthInsights; @@ -19,6 +17,72 @@ namespace ClientForAzureHealthInsights; service: AzureHealthInsights, }) interface ClinicalMatchingClient { + #suppress "@azure-tools/typespec-azure-core/long-running-polling-operation-required" "Polling through operation-location" #suppress "@azure-tools/typespec-azure-core/use-standard-operations" "https://github.com/microsoft/typespec/issues/2037" matchTrials is AzureHealthInsights.TrialMatcher.createJob; } + +@@projectedName(Fhir.R4.Extension, "java", "Fhir_R4_Extension"); +@@projectedName(Fhir.R4.Extension, "csharp", "Fhir_R4_Extension"); +@@projectedName(Fhir.R4.Extendible, "java", "Fhir_R4_Extendible"); +@@projectedName(Fhir.R4.Extendible, "csharp", "Fhir_R4_Extendible"); +@@projectedName(Fhir.R4.Element, "java", "Fhir_R4_Element"); +@@projectedName(Fhir.R4.Element, "csharp", "Fhir_R4_Element"); +@@projectedName(Fhir.R4.Coding, "java", "Fhir_R4_Coding"); +@@projectedName(Fhir.R4.Coding, "csharp", "Fhir_R4_Coding"); +@@projectedName(Fhir.R4.CodeableConcept, "java", "Fhir_R4_CodeableConcept"); +@@projectedName(Fhir.R4.CodeableConcept, "csharp", "Fhir_R4_CodeableConcept"); +@@projectedName(Fhir.R4.Meta, "java", "Fhir_R4_Meta"); +@@projectedName(Fhir.R4.Meta, "csharp", "Fhir_R4_Meta"); +@@projectedName(Fhir.R4.Narrative, "java", "Fhir_R4_Narrative"); +@@projectedName(Fhir.R4.Narrative, "csharp", "Fhir_R4_Narrative"); +@@projectedName(Fhir.R4.Reference, "java", "Fhir_R4_Reference"); +@@projectedName(Fhir.R4.Reference, "csharp", "Fhir_R4_Reference"); +@@projectedName(Fhir.R4.Identifier, "java", "Fhir_R4_Identifier"); +@@projectedName(Fhir.R4.Identifier, "csharp", "Fhir_R4_Identifier"); +@@projectedName(Fhir.R4.Period, "java", "Fhir_R4_Period"); +@@projectedName(Fhir.R4.Period, "csharp", "Fhir_R4_Period"); +@@projectedName(Fhir.R4.Quantity, "java", "Fhir_R4_Quantity"); +@@projectedName(Fhir.R4.Quantity, "csharp", "Fhir_R4_Quantity"); +@@projectedName(Fhir.R4.Range, "java", "Fhir_R4_Range"); +@@projectedName(Fhir.R4.Range, "csharp", "Fhir_R4_Range"); +@@projectedName(Fhir.R4.Ratio, "java", "Fhir_R4_Ratio"); +@@projectedName(Fhir.R4.Ratio, "csharp", "Fhir_R4_Ratio"); +@@projectedName(Fhir.R4.Annotation, "java", "Fhir_R4_Annotation"); +@@projectedName(Fhir.R4.Annotation, "csharp", "Fhir_R4_Annotation"); +@@projectedName(Fhir.R4.SampledData, "java", "Fhir_R4_SampledData"); +@@projectedName(Fhir.R4.SampledData, "csharp", "Fhir_R4_SampledData"); +@@projectedName(Fhir.R4.ContactDetail, "java", "Fhir_R4_ContactDetail"); +@@projectedName(Fhir.R4.ContactDetail, "csharp", "Fhir_R4_ContactDetail"); +@@projectedName(Fhir.R4.ContactPoint, "java", "Fhir_R4_ContactPoint"); +@@projectedName(Fhir.R4.ContactPoint, "csharp", "Fhir_R4_ContactPoint"); +@@projectedName(Fhir.R4.Resource, "java", "Fhir_R4_Resource"); +@@projectedName(Fhir.R4.Resource, "csharp", "Fhir_R4_Resource"); +@@projectedName(Fhir.R4.DomainResource, "java", "Fhir_R4_DomainResource"); +@@projectedName(Fhir.R4.DomainResource, "csharp", "Fhir_R4_DomainResource"); +@@projectedName(Fhir.R4.Condition, "java", "Fhir_R4_Condition"); +@@projectedName(Fhir.R4.Condition, "csharp", "Fhir_R4_Condition"); +@@projectedName(Fhir.R4.ConditionStage, "java", "Fhir_R4_ConditionStage"); +@@projectedName(Fhir.R4.ConditionStage, "csharp", "Fhir_R4_ConditionStage"); +@@projectedName(Fhir.R4.Observation, "java", "Fhir_R4_Observation"); +@@projectedName(Fhir.R4.Observation, "csharp", "Fhir_R4_Observation"); +@@projectedName(Fhir.R4.ObservationReferenceRange, + "java", + "Fhir_R4_ObservationReferenceRange" +); +@@projectedName(Fhir.R4.ObservationReferenceRange, + "csharp", + "Fhir_R4_ObservationReferenceRange" +); +@@projectedName(Fhir.R4.ObservationComponent, + "java", + "Fhir_R4_ObservationComponent" +); +@@projectedName(Fhir.R4.ObservationComponent, + "csharp", + "Fhir_R4_ObservationComponent" +); +@@projectedName(Fhir.R4.ResearchStudy, "java", "Fhir_R4_ResearchStudy"); +@@projectedName(Fhir.R4.ResearchStudy, "csharp", "Fhir_R4_ResearchStudy"); +@@projectedName(AzureHealthInsights.PatientInfoSex, "client", "PatientSex"); +@@projectedName(AzureHealthInsights.PatientInfo, "client", "PatientDetails"); diff --git a/specification/ai/HealthInsights/HealthInsights.TrialMatcher/model.trialmatcher.tsp b/specification/ai/HealthInsights/HealthInsights.TrialMatcher/model.trialmatcher.tsp index da62117ae22d..5bfefa34be75 100644 --- a/specification/ai/HealthInsights/HealthInsights.TrialMatcher/model.trialmatcher.tsp +++ b/specification/ai/HealthInsights/HealthInsights.TrialMatcher/model.trialmatcher.tsp @@ -1,10 +1,9 @@ import "../HealthInsights.Common/model.common.request.tsp"; import "../HealthInsights.Common/model.common.response.tsp"; import "../HealthInsights.Common/model.common.shared.tsp"; -import "@azure-tools/typespec-azure-core"; +import "../HealthInsights.Common/model.common.fhir.elements.tsp"; using TypeSpec.Rest; -using Azure.Core; namespace AzureHealthInsights; @@ -29,21 +28,15 @@ resulting trial set is a union of the two sets. clinicalTrials: ClinicalTrials; } -@resource("trialmatcher/jobs") +@resource("trial-matcher/jobs") @doc("The response for the Trial Matcher request.") -model TrialMatcherResult { - ...Response; - - @doc("The inference results for the Trial Matcher request.") - @visibility("read") - @lroResult - results?: TrialMatcherResults; -} +model TrialMatcherResult + is HealthInsightsOperationStatus; @doc("The inference results for the Trial Matcher request.") -model TrialMatcherResults { +model TrialMatcherInferenceResult { @doc("Results for the patients given in the request.") - patients: TrialMatcherPatientResult[]; + patientResults: TrialMatcherPatientResult[]; @doc("The version of the model used for inference, expressed as the model date.") modelVersion: ModelVersion; @@ -52,20 +45,6 @@ model TrialMatcherResults { knowledgeGraphLastUpdateDate?: plainDate; } -@doc("The results of the model's work for a single patient.") -model TrialMatcherPatientResult { - @doc("The identifier given for the patient in the request.") - id: string; - - @doc("The model's inferences for the given patient.") - inferences: TrialMatcherInference[]; - - @doc(""" -Clinical information which is needed to provide better trial matching results for the patient. -""") - neededClinicalInfo?: NeededClinicalInfo; -} - @doc("Clinical information which is needed to provide better trial matching results for the patient.") model NeededClinicalInfo is ExtendedClinicalCodedElement[]; @@ -86,6 +65,28 @@ The bio-medical category related to the coded concept, e.g. Diagnosis, Symptom, category?: string; } +@doc("The results of the model's work for a single patient.") +model TrialMatcherPatientResult { + @doc("The identifier given for the patient in the request.") + patientId: string; + + @doc("The inference results for the patient.") + inferences: Array; + + @doc(""" + Clinical information which is needed to provide better trial matching results for the patient. + """) + neededClinicalInfo?: NeededClinicalInfo; +} + +@doc("A piece of evidence corresponding to a Trial Matcher inference.") +model TrialMatcherInferenceEvidence { + @doc("A piece of evidence from the eligibility criteria text of a clinical trial.") + eligibilityCriteriaEvidence?: string; + + ...InferenceEvidence; +} + @doc("An inference made by the Trial Matcher model regarding a patient.") model TrialMatcherInference { @doc("The type of the Trial Matcher inference.") @@ -98,7 +99,7 @@ model TrialMatcherInference { @doc("The identifier of the clinical trial.") @minLength(1) - id?: string; + clinicalTrialId?: string; @doc("Possible sources of a clinical trial.") source?: ClinicalTrialSource; @@ -115,12 +116,12 @@ In case both are given, the resulting trial set is a union of the two sets. model ClinicalTrials { @doc("A list of clinical trials.") @minItems(1) - customTrials?: ClinicalTrialDetails[]; + customTrials?: Array; @doc(""" -A list of filters, each one creating a selection of trials from a given -clinical trial registry. -""") + A list of filters, each one creating a selection of trials from a given + clinical trial registry. + """) @minItems(1) registryFilters?: ClinicalTrialRegistryFilter[]; } @@ -234,56 +235,6 @@ model AreaProperties { radius: float64; } -@doc("A description of a clinical trial.") -model ClinicalTrialDetails { - @doc(""" -A given identifier for the clinical trial. Has to be unique within a list of clinical trials. -""") - @minLength(1) - id: string; - - @doc(""" -The eligibility criteria of the clinical trial (inclusion and exclusion), given as text. -""") - eligibilityCriteriaText?: string; - - @doc("Demographic criteria for a clinical trial.") - demographics?: ClinicalTrialDemographics; - - @doc("Trial data which is of interest to the potential participant.") - metadata: ClinicalTrialMetadata; -} - -@doc("Demographic criteria for a clinical trial.") -model ClinicalTrialDemographics { - @doc("Indication of the sex of people who may participate in the clinical trial.") - acceptedSex?: ClinicalTrialAcceptedSex; - - @doc("A definition of the range of ages accepted by a clinical trial. Contains a minimum age and/or a maximum age.") - acceptedAgeRange?: AcceptedAgeRange; -} - -@doc(""" -A definition of the range of ages accepted by a clinical trial. Contains a minimum age and/or a maximum age. -""") -model AcceptedAgeRange { - @doc("A person's age, given as a number (value) and a unit (e.g. years, months)") - minimumAge?: AcceptedAge; - - @doc("A person's age, given as a number (value) and a unit (e.g. years, months)") - maximumAge?: AcceptedAge; -} - -@doc("A person's age, given as a number (value) and a unit (e.g. years, months)") -model AcceptedAge { - @doc("Possible units for a person's age.") - unit: AgeUnit; - - @doc("The number of years/months/days that represents the person's age.") - @minValueExclusive(0.0) - value: float32; -} - @doc("Trial data which is of interest to the potential participant.") model ClinicalTrialMetadata { @doc(""" @@ -336,22 +287,6 @@ model ClinicalTrialResearchFacility { ...GeographicLocation; } -#suppress "@azure-tools/typespec-azure-core/documentation-required" "MUST fix in next update" -@doc("Possible values for the Sex eligibility criterion as accepted by clinical trials, which indicates the sex of people who may participate in a clinical study.") -enum ClinicalTrialAcceptedSex { - All: "all", - Female: "female", - Male: "male", -} - -#suppress "@azure-tools/typespec-azure-core/documentation-required" "MUST fix in next update" -@doc("Possible units for a person's age.") -enum AgeUnit { - Years: "years", - Months: "months", - Days: "days", -} - #suppress "@azure-tools/typespec-azure-core/documentation-required" "MUST fix in next update" @doc("Possible phases of a clinical trial.") enum ClinicalTrialPhase { diff --git a/specification/ai/HealthInsights/HealthInsights.TrialMatcher/route.trialmatcher.tsp b/specification/ai/HealthInsights/HealthInsights.TrialMatcher/route.trialmatcher.tsp index 3faf9fc355ae..93e95071ca9c 100644 --- a/specification/ai/HealthInsights/HealthInsights.TrialMatcher/route.trialmatcher.tsp +++ b/specification/ai/HealthInsights/HealthInsights.TrialMatcher/route.trialmatcher.tsp @@ -1,7 +1,6 @@ import "@azure-tools/typespec-azure-core"; import "@typespec/rest"; import "@typespec/http"; - import "./model.trialmatcher.tsp"; import "../HealthInsights.Common/primitives.tsp"; @@ -12,16 +11,24 @@ using TypeSpec.Http; namespace AzureHealthInsights; interface TrialMatcher { + #suppress "@azure-tools/typespec-azure-core/no-rpc-path-params" "Service uses a jobId in the path" @summary("Get Trial Matcher job details") @tag("TrialMatcher") @doc("Gets the status and details of the Trial Matcher job.") - getJob is Azure.Core.ResourceRead; + @get + @route("/trial-matcher/jobs/{id}") + getJob is HealthInsightsLongRunningPollOperation; + #suppress "@azure-tools/typespec-azure-core/long-running-polling-operation-required" "Polling through operation-location" #suppress "@azure-tools/typespec-azure-core/use-standard-operations" "There is no long-running RPC template in Azure.Core" @summary("Create Trial Matcher job") @tag("TrialMatcher") @doc("Creates a Trial Matcher job with the given request body.") @pollingOperation(TrialMatcher.getJob) - @route("/trialmatcher/jobs") - createJob is LongRunningRpcOperation; + @route("/trial-matcher/jobs") + createJob is HealthInsightsLongRunningRpcOperation< + TrialMatcherData, + TrialMatcherResult, + TrialMatcherInferenceResult + >; } diff --git a/specification/ai/HealthInsights/HealthInsights.TrialMatcher/tspconfig.yaml b/specification/ai/HealthInsights/HealthInsights.TrialMatcher/tspconfig.yaml index b75525ca55f2..5355954b032d 100644 --- a/specification/ai/HealthInsights/HealthInsights.TrialMatcher/tspconfig.yaml +++ b/specification/ai/HealthInsights/HealthInsights.TrialMatcher/tspconfig.yaml @@ -1,19 +1,51 @@ -emit: [] +parameters: + "service-dir": + default: "sdk/healthinsights" + "service-name": + default: "HealthInsights" + "dependencies": + "additionalDirectories": + - "specification/ai/HealthInsights/HealthInsights.Common/" + - "specification/ai/HealthInsights/HealthInsights.OpenAPI/" + default: "" + "python-sdk-folder": + default: "{project-root}/azure-sdk-for-python/" + "java-sdk-folder": + default: "{project-root}/azure-sdk-for-java/" + "js-sdk-folder": + default: "{project-root}/azure-sdk-for-js/" + "csharp-sdk-folder": + default: "{project-root}/azure-sdk-for-net/" + "service-directory-name": + default: "healthinsights" +emit: + - "@azure-tools/typespec-autorest" linter: extends: - "@azure-tools/typespec-azure-core/all" options: - "@azure-tools/typespec-csharp": - namespace : "Azure.Health.Insights.ClinicalMatching" - clear-output-folder : true - new-project : false - model-namespace : false + "@azure-tools/typespec-python": + package-pprint-name: '"Azure Health Insights - Clinical Matching"' + package-mode: "dataplane" + package-version: 1.0.0b2 + package-dir: "azure-healthinsights-clinicalmatching" + package-name: "{package-dir}" + emitter-output-dir: "{python-sdk-folder}/sdk/{service-directory-name}/{package-name}" "@azure-tools/typespec-java": - namespace: "Com.Azure.Health.Insights.ClinicalMatching" + package-dir: "azure-healthinsights-clinicalmatching" + namespace: com.azure.health.insights.clinicalmatching + partial-update: true + emitter-output-dir: "{java-sdk-folder}/sdk/{service-directory-name}/azure-health-insights-clinicalmatching" + "@azure-tools/typespec-csharp": + save-inputs: false clear-output-folder: true - new-project: false + package-dir: "Azure.Health.Insights.ClinicalMatching" + namespace: "{package-dir}" model-namespace: false - "@azure-tools/cadl-typescript": + "@azure-tools/typespec-ts": + package-dir: "azurehealthinsightsclinicalmatching-rest" + emitter-output-dir: "{js-sdk-folder}/sdk/{service-directory-name}/health-insights-cancerprofiling-rest" + generateMetadata: true + generateTest: true packageDetails: name: "@azure-rest/health-insights-clinicalmatching" - description: "Azure Health Insights ClinicalMatching" diff --git a/specification/ai/HealthInsights/service.tsp b/specification/ai/HealthInsights/service.tsp deleted file mode 100644 index 1df0a2e8cece..000000000000 --- a/specification/ai/HealthInsights/service.tsp +++ /dev/null @@ -1,24 +0,0 @@ -using TypeSpec.Rest; -using TypeSpec.Http; -using TypeSpec.Versioning; - -@service({ - title: "Azure Health Insights", -}) -@versioned(ApiVersion) -@doc("Azure Health Insights provides an API that serves insight models, specific for Health & Life Sciences, that perform analysis and provide inferences to be used by a human.") -@server( - "{endpoint}/healthinsights", - "Azure Health Insights provides an API that serves insight models, specific for Health & Life Sciences, that perform analysis and provide inferences to be used by a human.", - { - @doc("Supported Cognitive Services endpoints (protocol and hostname, for example: https://westus2.api.cognitive.microsoft.com).") - endpoint: url, - } -) -@useAuth(ApiKeyAuth) -namespace AzureHealthInsights; - -#suppress "@azure-tools/typespec-azure-core/documentation-required" "https://github.com/Azure/typespec-azure/issues/3107" -enum ApiVersion { - v2023_03_01_preview: "2023-03-01-preview", -} diff --git a/specification/ai/data-plane/HealthInsights/preview/2023-09-01-preview/examples/SuccessfulOncoPhenotypeRequest.json b/specification/ai/data-plane/HealthInsights/preview/2023-09-01-preview/examples/SuccessfulOncoPhenotypeRequest.json new file mode 100644 index 000000000000..08280a8b2e72 --- /dev/null +++ b/specification/ai/data-plane/HealthInsights/preview/2023-09-01-preview/examples/SuccessfulOncoPhenotypeRequest.json @@ -0,0 +1,64 @@ +{ + "operationId": "OncoPhenotype_CreateJob", + "title": "Creates an Onco Phenotype job with the given request body.", + "parameters": { + "endpoint": "{endpoint}", + "api-version": "2023-09-01-preview", + "body": { + "patients": [ + { + "id": "Patient ID Example 1", + "info": { + "sex": "female", + "birthDate": "1975-09-27" + }, + "patientDocuments": [ + { + "type": "note", + "clinicalType": "historyAndPhysical", + "id": "1", + "language": "en", + "createdDateTime": "2021-10-26T16:54:44.739Z", + "content": { + "sourceType": "inline", + "value": "Sample note 1" + } + }, + { + "type": "note", + "clinicalType": "imaging", + "id": "2", + "language": "en", + "createdDateTime": "2020-11-26T16:39:44.739Z", + "content": { + "sourceType": "inline", + "value": "Sample note 2" + } + } + ] + } + ], + "configuration": { + "verbose": true, + "includeEvidence": true, + "inferenceTypes": [ + "histology", + "clinicalStageT" + ], + "checkForCancerCase": false + } + } + }, + "responses": { + "202": { + "headers": { + "Operation-Location": "{endpoint}/health-insights/onco-phenotype/jobs/{id}?api-version=2023-09-01-preview", + "Retry-After": "1" + }, + "body": { + "status": "notStarted", + "id": "3fa85f64-5717-4562-b3fc-2c963f66afa6" + } + } + } +} diff --git a/specification/ai/data-plane/HealthInsights/preview/2023-09-01-preview/examples/SuccessfulOncoPhenotypeResponse.json b/specification/ai/data-plane/HealthInsights/preview/2023-09-01-preview/examples/SuccessfulOncoPhenotypeResponse.json new file mode 100644 index 000000000000..5695c10cdfc4 --- /dev/null +++ b/specification/ai/data-plane/HealthInsights/preview/2023-09-01-preview/examples/SuccessfulOncoPhenotypeResponse.json @@ -0,0 +1,65 @@ +{ + "operationId": "OncoPhenotype_GetJob", + "title": "Gets the status and details of the Onco Phenotype job.", + "parameters": { + "endpoint": "{endpoint}", + "api-version": "2023-09-01-preview", + "id": "3fa85f64-5717-4562-b3fc-2c963f66afa6" + }, + "responses": { + "200": { + "body": { + "id": "3fa85f64-5717-4562-b3fc-2c963f66afa6", + "createdDateTime": "2021-11-26T17:22:27.386Z", + "expirationDateTime": "2021-11-26T17:22:27.386Z", + "lastUpdateDateTime": "2021-11-26T17:22:27.386Z", + "status": "succeeded", + "result": { + "patientResults": [ + { + "patientId": "Patient ID Example 1", + "inferences": [ + { + "type": "histology", + "value": "8561", + "description": "Adenolymphoma", + "confidenceScore": 0.85, + "evidence": [ + { + "patientDataEvidence": { + "id": "1", + "text": "string", + "offset": 70, + "length": 135 + }, + "importance": 1 + } + ] + }, + { + "type": "clinicalStageT", + "value": "T3", + "description": "Locally advanced disease at risk for micrometastases", + "confidenceScore": 0.88, + "evidence": [ + { + "patientDataEvidence": { + "id": "2", + "text": "string", + "offset": 12, + "length": 9 + }, + "importance": 1 + } + ], + "caseId": "1" + } + ] + } + ], + "modelVersion": "2021-11-26" + } + } + } + } +} diff --git a/specification/ai/data-plane/HealthInsights/preview/2023-09-01-preview/examples/SuccessfulPatientTimelineRequest.json b/specification/ai/data-plane/HealthInsights/preview/2023-09-01-preview/examples/SuccessfulPatientTimelineRequest.json new file mode 100644 index 000000000000..50500c8cea6e --- /dev/null +++ b/specification/ai/data-plane/HealthInsights/preview/2023-09-01-preview/examples/SuccessfulPatientTimelineRequest.json @@ -0,0 +1,23 @@ +{ + "operationId": "PatientTimeline_CreateJob", + "title": "Creates a Patient Timeline job with the given request body.", + "parameters": { + "endpoint": "{endpoint}", + "api-version": "2023-09-01-preview", + "body": { + "patients": [] + } + }, + "responses": { + "202": { + "headers": { + "Operation-Location": "{endpoint}/health-insights/patient-timeline/jobs/{id}?api-version=2023-09-01-preview", + "Retry-After": "1" + }, + "body": { + "status": "notStarted", + "id": "3fa85f64-5717-4562-b3fc-2c963f66afa6" + } + } + } +} diff --git a/specification/ai/data-plane/HealthInsights/preview/2023-09-01-preview/examples/SuccessfulPatientTimelineResponse.json b/specification/ai/data-plane/HealthInsights/preview/2023-09-01-preview/examples/SuccessfulPatientTimelineResponse.json new file mode 100644 index 000000000000..a73eff7a3e34 --- /dev/null +++ b/specification/ai/data-plane/HealthInsights/preview/2023-09-01-preview/examples/SuccessfulPatientTimelineResponse.json @@ -0,0 +1,24 @@ +{ + "operationId": "PatientTimeline_GetJob", + "title": "Gets the status and details of the Patient Timeline job.", + "parameters": { + "endpoint": "{endpoint}", + "api-version": "2023-09-01-preview", + "id": "a4d3d73e-2be3-4ca1-bd4f-66a5bdd19754" + }, + "responses": { + "200": { + "body": { + "id": "a4d3d73e-2be3-4ca1-bd4f-66a5bdd19754", + "createdDateTime": "2021-11-28T09:13:11.046Z", + "expirationDateTime": "2021-11-28T09:13:11.046Z", + "lastUpdateDateTime": "2021-11-28T09:13:11.046Z", + "status": "succeeded", + "result": { + "patientResults": [], + "modelVersion": "2021-10-28" + } + } + } + } +} diff --git a/specification/ai/data-plane/HealthInsights/preview/2023-09-01-preview/examples/SuccessfulRadiologyInsightsRequest.json b/specification/ai/data-plane/HealthInsights/preview/2023-09-01-preview/examples/SuccessfulRadiologyInsightsRequest.json new file mode 100644 index 000000000000..6041b94cdfcb --- /dev/null +++ b/specification/ai/data-plane/HealthInsights/preview/2023-09-01-preview/examples/SuccessfulRadiologyInsightsRequest.json @@ -0,0 +1,121 @@ +{ + "operationId": "RadiologyInsights_CreateJob", + "title": "Creates a Radiology Insights job with the given request body.", + "parameters": { + "endpoint": "{endpoint}", + "api-version": "2023-09-01-preview", + "body": { + "configuration": { + "inferenceOptions": { + "followupRecommendationOptions": { + "includeRecommendationsWithNoSpecifiedModality": false, + "includeRecommendationsInReferences": false, + "provideFocusedSentenceEvidence": false + }, + "findingOptions": { + "provideFocusedSentenceEvidence": false + } + }, + "inferenceTypes": [ + "finding", + "ageMismatch", + "lateralityDiscrepancy", + "sexMismatch", + "completeOrderDiscrepancy", + "limitedOrderDiscrepancy", + "criticalResult", + "criticalRecommendation", + "followupRecommendation", + "followupCommunication", + "radiologyProcedure" + ], + "locale": "en-US", + "verbose": false, + "includeEvidence": true + }, + "patients": [ + { + "id": "sample id 1", + "info": { + "sex": "male", + "clinicalInfo": [ + { + "resourceType": "Observation", + "status": "unknown", + "code": { + "coding": [ + { + "system": "http://www.nlm.nih.gov/research/umls", + "code": "C0018802", + "display": "MalignantNeoplasms" + } + ] + }, + "valueBoolean": "true" + } + ] + }, + "encounters": [ + { + "id": "encounterid1", + "period": { + "start": "2023-12-21T00:00:00", + "end": "2023-12-21T00:00:00" + }, + "class": "inpatient" + } + ], + "patientDocuments": [ + { + "type": "note", + "clinicalType": "radiologyReport", + "id": "docid1", + "language": "en", + "authors": [ + { + "id": "authorid1", + "fullName": "authorname1" + } + ], + "specialtyType": "radiology", + "createdDateTime": "2023-12-21T00:00:00", + "administrativeMetadata": { + "orderedProcedures": [ + { + "code": { + "coding": [ + { + "system": "Http://hl7.org/fhir/ValueSet/cpt-all", + "code": "111111", + "display": "CT ABD/PELVIS" + } + ] + }, + "description": "CT ABD/PELVIS" + } + ], + "encounterId": "encounterid1" + }, + "content": { + "sourceType": "inline", + "value": "[**2143-4-13**] 5:04 PM\r\nCT ABD W&W/O C; CT CHEST W&W/O C Clip # [**Clip Number (Radiology) 38350**]\r\nCT PELVIS W&W/O C\r\nReason: ? PE, evidence of pneumonia\r\nAdmitting Diagnosis: SEPSIS\r\nField of view: 38 Contrast: OPTIRAY Amt: 130\r\n______________________________________________________________________________\r\n[**Hospital 4**] MEDICAL CONDITION:\r\n52 year old man with urosepsis, s/p nephrostogram on [**4-12**], today with acute\r\nSOB, fever, rigors.\r\nREASON FOR THIS EXAMINATION:\r\n? PE, evidence of pneumonia\r\nNo contraindications for IV contrast\r\n______________________________________________________________________________\r\nFINAL REPORT\r\nINDICATION: History of urosepsis status post nephrostogram on [**4-12**], today\r\nwith acute shortness of breath, fevers, and rigors. Also reported hematocrit\r\ndrop. Evaluate for pulmonary embolism or hematoma.\r\nCOMPARISON: Non-contrast CT of the abdomen and pelvis dated [**2143-4-11**].\r\nTECHNIQUE: MDCT acquired images of the chest, abdomen, and pelvis were\r\nobtained before and after the administration of IV contrast. A true CT\r\nangiogram could not be performed due to lack of appropriate intravenous\r\naccess.\r\nCT OF THE CHEST WITHOUT AND WITH IV CONTRAST: Evaluation of the pulmonary\r\narteries is limited with no large central pulmonary embolism seen. Evaluation\r\nof the segmental and subsegmental branches is limited. There is a central\r\nvenous catheter that terminates in the right atrium. There are numerous small\r\nmesenteric and axillary lymph nodes that do not meet CT criteria for\r\npathologic enlargement. There are coronary artery calcifications. There are\r\nbilateral small layering pleural effusions with associated compressive\r\natelectasis. The images of the lungs are limited due to motion. There\r\nappears to be a patchy, predominantly ground-glass opacity in both lower\r\nlobes, left worse than right. The aorta appears intact. There is debris in\r\nthe trachea.\r\nCT OF THE ABDOMEN WITHOUT AND WITH IV CONTRAST: There is high-density\r\nmaterial tracking along the course of a dilated left ureter consistent with\r\nhemorrhage that is new compared to the previous study. New stranding in the\r\nleft retroperitoneum is also present consistent with retroperitoneal\r\nhemorrhage. Perinephric stranding is present, as was seen on the previous\r\nstudy. The degree of dilatation of the left ureter is unchanged. Several\r\nfoci of air outside of the collecting system are present, presumably\r\npostprocedural in nature. Contrast-enhanced images show abnormal perfusion of\r\nthe left kidney with a striated appearance, most severe at the upper pole with\r\nperipheral wedge-shaped hypoenhancing areas also present on top of the areas\r\nof reduced perfusion. No active extravasation of contrast is seen. The right\r\nkidney is normal. The liver, spleen, and adrenal glands are unremarkable.\r\nPancreas is unremarkable with slightly prominent distal common bile duct\r\nmeasuring up to 8-9 mm. There is a small cystic lesion measuring 5 mm at the\r\nhead of the pancreas (series 10, image 143). Small and large bowel are\r\n(Over)\r\n[**2143-4-13**] 5:04 PM\r\nCT ABD W&W/O C; CT CHEST W&W/O C Clip # [**Clip Number (Radiology) 38350**]\r\nCT PELVIS W&W/O C\r\nReason: ? PE, evidence of pneumonia\r\nAdmitting Diagnosis: SEPSIS\r\nField of view: 38 Contrast: OPTIRAY Amt: 130\r\n______________________________________________________________________________\r\nFINAL REPORT\r\n(Cont)\r\ngrossly unremarkable. The aorta, celiac artery, superior mesenteric artery,\r\ninferior mesenteric artery, and renal arteries appear patent.\r\nCT OF THE PELVIS WITHOUT AND WITH IV CONTRAST: The prostate gland is\r\nenlarged. Thickening of the bladder wall is again demonstrated. Several foci\r\nof air within the bladder are presumably secondary to the Foley catheter. The\r\nrectum and sigmoid colon are unremarkable.\r\nBONE WINDOWS: There are degenerative changes with no suspicious lytic or\r\nsclerotic lesions.\r\nIMPRESSION:\r\n1. New high-density material surrounding the left ureter and tracking within\r\nthe retroperitoneum consistent with hemorrhage.\r\n2. Abnormal perfusion of the left kidney, most severe at the upper pole.\r\nFindings are consistent with pyelonephritis. Edema and abnormal perfusion at\r\nthe upper pole and interpolar region medially with multiple peripheral\r\nhypoenhancing wedge- shaped regions likely represent ischemia and a component\r\nof infarction.\r\n3. Limited examination for pulmonary embolism due to suboptimal contrast\r\nbolus with no large central embolus seen. Evaluation of distal segmental and\r\nsubsegmental branches is limited.\r\n4. Small bilateral layering pleural effusions with associated compressive\r\natelectasis. Patchy predominantly ground-glass opacities in both lower lobes,\r\nleft worse than right could represent pneumonia or pneumonitis.\r\n5. 5mm cystic lesion in the head of the pancreas. Recommend 1 year follow up.\r\nThe above was discussed with Dr. [**First Name8 (NamePattern2) 951**] [**Last Name (NamePattern1) 1238**] at approximately 6:30 p.m. on\r\n[**2143-4-13**].\r\n" + } + } + ] + } + ] + } + }, + "responses": { + "202": { + "headers": { + "Operation-Location": "{endpoint}/health-insights/radiology-insights/jobs/{id}?api-version=2023-09-01-preview", + "Retry-After": "1" + }, + "body": { + "status": "notStarted", + "id": "ad28aef5-87f3-4d2d-97eb-5cdeb4519d12" + } + } + } +} diff --git a/specification/ai/data-plane/HealthInsights/preview/2023-09-01-preview/examples/SuccessfulRadiologyInsightsResponse.json b/specification/ai/data-plane/HealthInsights/preview/2023-09-01-preview/examples/SuccessfulRadiologyInsightsResponse.json new file mode 100644 index 000000000000..6167030c095f --- /dev/null +++ b/specification/ai/data-plane/HealthInsights/preview/2023-09-01-preview/examples/SuccessfulRadiologyInsightsResponse.json @@ -0,0 +1,33451 @@ +{ + "operationId": 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Deficiency Syndromes" + }, + { + "system": "http://hl7.org/fhir/sid/icpc-2", + "code": "B99011", + "display": "Immunologic Deficiency Syndromes" + }, + { + "system": "http://www.nlm.nih.gov/research/umls/nci_fda", + "code": "2156", + "display": "Immunologic Deficiency Syndromes" + }, + { + "system": "http://www.nlm.nih.gov/research/umls/msh", + "code": "D007153", + "display": "Immunologic Deficiency Syndromes" + }, + { + "system": "http://www.nlm.nih.gov/research/umls/nci_nichd", + "code": "C39725", + "display": "Immunologic Deficiency Syndromes" + }, + { + "system": "http://hl7.org/fhir/sid/icd-9-cm", + "code": "279.3", + "display": "Immunologic Deficiency Syndromes" + }, + { + "system": "http://www.nlm.nih.gov/research/umls/rcd", + "code": "X20GZ", + "display": "Immunologic Deficiency Syndromes" + }, + { + "system": "http://snomed.info/sct", + "code": "F-C0450", + "display": "Immunologic Deficiency Syndromes" + }, + { + "system": "http://www.nlm.nih.gov/research/umls/costar", + "code": "U000355", + "display": "Immunologic Deficiency Syndromes" + }, + { + "system": "http://loinc.org", + "code": "MTHU054768", + "display": "Immunologic Deficiency Syndromes" + }, + { + "system": "http://www.nlm.nih.gov/research/umls/nanda-i", + "code": "02515", + "display": "Immunologic Deficiency Syndromes" + }, + { + "system": "http://www.nlm.nih.gov/research/umls/lch_nw", + "code": "sh85064574", + "display": "Immunologic Deficiency Syndromes" + }, + { + "system": "http://www.nlm.nih.gov/research/umls/ccpss", + "code": "1007151", + "display": "Immunologic Deficiency Syndromes" + }, + { + "system": "http://hl7.org/fhir/sid/icpc-2", + "code": "MTHU037620", + "display": "Immunologic Deficiency Syndromes" + }, + { + "system": "http://www.nlm.nih.gov/research/umls/aod", + "code": "0000004832", + "display": "Immunologic Deficiency Syndromes" + } + ], + "text": "Immunologic Deficiency Syndromes" + }, + { + "coding": [ + { + "system": "http://hl7.org/fhir/administrative-gender", + "code": "Unknown", + "display": "Unknown" + } + ], + "text": "Unknown" + }, + { + "coding": [ + { + "system": "http://decades-value-set.ctm.microsoft.org", + "code": "0", + "display": "Age keyword for indexing - 0" + } + ], + "text": "Age keyword for indexing - 0" + }, + { + "coding": [ + { + "system": "http://decades-value-set.ctm.microsoft.org", + "code": "10", + "display": "Age keyword for indexing - 10" + } + ], + "text": "Age keyword for indexing - 10" + } + ], + "description": "This is a Phase II, open-label (all people involved know the identity of the assigned drug)\r\n and single arm study. The study will consist of a screening period of maximum 8 weeks, an\r\n initial treatment period of 48 weeks, a post week 48 treatment extension period of 4 years,\r\n and a 4 week follow-up period. A follow-up period will take place regardless of the presence\r\n of serious adverse events (SAEs) if patients withdraw early (ie, before Week 48) or if\r\n patients do not participate in the extension after Week 48; after Week 48, a 4-week follow-up\r\n visit is only required in case of ongoing (S)AEs at the final on treatment visit. The initial\r\n 48-week treatment period will be structured into 2 age Cohorts; Cohort 1 (Aged greater than\r\n or equal to [>=] 12 to less than [<] 18 years) and Cohort 2 (Children Aged >= 6 to < 12\r\n years) and each Cohort will have 2 parts. The first part of the trial (Part 1) is designed to\r\n evaluate the steady-state pharmacokinetic (PK) profile and the short-term safety and\r\n antiviral activity of rilpivirine 25 mg or adjusted dose once daily when administered in\r\n combination with 2 NRTIs. At Week 2/4, intensive PK will be done and an analysis together\r\n with short-term safety and antiviral activity will be reviewed by a data monitoring committee\r\n (DMC). For adolescents (Cohort 1) if the mean steady-state exposure in this first group of\r\n patients is comparable to that of the adult population (ie, is within 80-125 percentage of\r\n the mean exposure of the 25 mg once daily dose group in study, TMC278-C204), and the Week 2/4\r\n safety and antiviral activity results have been reviewed and deemed satisfactory by the DMC,\r\n the second part of the trial will start. The second part of the trial will evaluate long-term\r\n (48 weeks and 240 weeks) safety, efficacy, and pharmacokinetics of rilpivirine in combination\r\n with the background regimen of 2 NRTIs with a primary analysis time point at 24 weeks. For\r\n patients aged greater than or equal to (>=) 6 to less than (<) 12 years (Cohort 2), after\r\n being treated for at least 4 weeks and the Week 2 intensive PK and Week 4 safety and\r\n antiviral activity have been reviewed and results are satisfactory, recruitment in Part 1\r\n will resume and additional subjects will be enrolled to have at least 10 subjects in Part 1.\r\n Once an appropriate RPV dose has been selected, Part 1 of Cohort 2 will be considered\r\n complete and Part 2 will start. All patients from Part 1 will roll over in Part 2 and\r\n additional patients will be recruited in Part 2 to have at least 25 subjects (including those\r\n from Part 1) overall. In both cohorts of the trial, the ART will consist of rilpivirine 25 mg\r\n or adjusted dose once daily and an investigator-selected background regimen containing 2\r\n NRTIs. Patients safety will be monitored throughout the study and during the follow up\r\n visits.", + "enrollment": [ + { + "reference": "#2a43edc4-0000-0000-0000-000000000000", + "type": "Group" + } + ], + "period": { + "start": "2011-01", + "end": "2027-08" + }, + "arm": [ + { + "name": "Rilpivirine (TMC278)", + "type": { + "text": "Experimental" + }, + "description": "The patients will receive rilpivirine with 2 nucleoside/nucleotide reverse transcriptase inhibitors (NRTIs) as a background regimen in Cohort 1 [Aged greater than or equal to (> =) 12 to less than (<) 18 years] and Cohort 2 (children aged > = 6 to < 12 years). The NRTIs includes zidovudine, abacavir, or tenofovir disoproxil fumarate in combination with lamivudine or emtricitabine." + } + ] + } + ], + "registryFilters": [ + { + "studyTypes": [ + "interventional", + "observational" + ], + "recruitmentStatuses": [ + "recruiting", + "enrollingByInvitation" + ], + "phases": [ + "phase2", + "phase3" + ], + "purposes": [ + "diagnostic", + "prevention", + "basicScience" + ], + "sources": [ + "clinicaltrials.gov" + ], + "facilityLocations": [ + { + "city": "Basel", + "countryOrRegion": "Switzerland" + }, + { + "city": "Allschwil", + "countryOrRegion": "Switzerland" + } + ] + }, + { + "sponsors": [ + "Janssen" + ], + "sources": [ + "clinicaltrials.gov" + ], + "facilityAreas": [ + { + "type": "Feature", + "geometry": { + "type": "Point", + "coordinates": [ + 7.588576, + 47.559601 + ] + }, + "properties": { + "subType": "Circle", + "radius": 80000 + } + } + ] + }, + { + "ids": [ + "NCT04006015", + "NCT04545788", + "NCT04773711" + ], + "sources": [ + "clinicaltrials.gov" + ] + } + ] + } + } + } + }, + "responses": { + "202": { + "headers": { + "Operation-Location": "{endpoint}/health-insights/trial-matcher/jobs/{id}?api-version=2023-09-01-preview", + "Retry-After": "1" + }, + "body": { + "status": "notStarted", + "id": "a4d3d73e-2be3-4ca1-bd4f-66a5bdd19754" + } + } + } +} diff --git a/specification/ai/data-plane/HealthInsights/preview/2023-09-01-preview/examples/SuccessfulTrialMatcherResponse.json b/specification/ai/data-plane/HealthInsights/preview/2023-09-01-preview/examples/SuccessfulTrialMatcherResponse.json new file mode 100644 index 000000000000..eda21af93fa1 --- /dev/null +++ b/specification/ai/data-plane/HealthInsights/preview/2023-09-01-preview/examples/SuccessfulTrialMatcherResponse.json @@ -0,0 +1,113 @@ +{ + "operationId": "TrialMatcher_GetJob", + "title": "Gets the status and details of the Trial Matcher job.", + "parameters": { + "endpoint": "{endpoint}", + "api-version": "2023-09-01-preview", + "id": "a4d3d73e-2be3-4ca1-bd4f-66a5bdd19754" + }, + "responses": { + "200": { + "body": { + "id": "a4d3d73e-2be3-4ca1-bd4f-66a5bdd19754", + "createdDateTime": "2021-11-28T09:13:11.046Z", + "expirationDateTime": "2021-11-28T09:13:11.046Z", + "lastUpdateDateTime": "2021-11-28T09:13:11.046Z", + "status": "succeeded", + "result": { + "patientResults": [ + { + "patientId": "Patient ID Example 2", + "inferences": [ + { + "type": "trialEligibility", + "value": "Eligible", + "description": "SwEaTB - Diagnosing of Acute Tuberculosis", + "confidenceScore": 1, + "evidence": [ + { + "eligibilityCriteriaEvidence": "In-patients with acute tuberculosis", + "patientInfoEvidence": { + "system": "UMLS", + "code": "C0019046", + "name": "tuberculosis" + }, + "importance": 1 + } + ], + "clinicalTrialId": "NCT03667742", + "source": "clinicaltrials.gov", + "metadata": { + "phases": [ + "phase3" + ], + "studyType": "observational", + "recruitmentStatus": "recruiting", + "conditions": [ + "Tuberculosis" + ], + "sponsors": [ + "University Hospital, Basel, Switzerland" + ], + "contacts": [ + { + "name": "John Doe, PD Dr. Med", + "email": "John@contoso.com", + "phone": "+55-555-5555-55" + } + ], + "facilities": [ + { + "name": "University Hospital, Basel", + "city": "Basel", + "countryOrRegion": "Switzerland" + } + ] + } + }, + { + "type": "trialEligibility", + "value": "Ineligible", + "description": "Design of an Integrative Algorithm for Staging Tuberculosis (STAGE-TB)", + "confidenceScore": 1, + "evidence": [ + { + "eligibilityCriteriaEvidence": "negative for Quantiferon- TB Gold Plus Test or ELISpot", + "patientInfoEvidence": { + "system": "UMLS", + "code": "C0920508", + "name": "Enzyme-Linked Immunospot Assay", + "value": "30,000 PBMC cells per 10ul" + }, + "importance": 1 + } + ], + "clinicalTrialId": "NCT03691883", + "source": "clinicaltrials.gov" + } + ], + "neededClinicalInfo": [ + { + "system": "UMLS", + "code": "C4317078", + "name": "Mycobacterium Tuberculosis Measurement ", + "semanticType": "Laboratory Procedure", + "category": "EXAMINATION_NAME" + }, + { + "system": "UMLS", + "code": "C0008031", + "name": "Chest Pain", + "semanticType": "Sign or Symptom", + "category": "SYMPTOM_OR_SIGN" + } + ] + } + ], + "modelVersion": "2021-10-28", + "knowledgeGraphLastUpdateDate": "2021-11-26" + } + } + } + } +} diff --git a/specification/ai/data-plane/HealthInsights/preview/2023-09-01-preview/openapi.json b/specification/ai/data-plane/HealthInsights/preview/2023-09-01-preview/openapi.json new file mode 100644 index 000000000000..34e747ad05f3 --- /dev/null +++ b/specification/ai/data-plane/HealthInsights/preview/2023-09-01-preview/openapi.json @@ -0,0 +1,4898 @@ +{ + "swagger": "2.0", + "info": { + "title": "Azure AI Health Insights", + "version": "2023-09-01-preview", + "description": "Azure AI Health Insights provides an API that serves insight models, specific for Health & Life Sciences, that perform analysis and provide inferences to be used by a human.", + "x-typespec-generated": [ + { + "emitter": "@azure-tools/typespec-autorest" + } + ] + }, + "schemes": [ + "https" + ], + "x-ms-parameterized-host": { + "hostTemplate": "{endpoint}/health-insights", + "useSchemePrefix": false, + "parameters": [ + { + "name": "endpoint", + "in": "path", + "description": "Supported Cognitive Services endpoints (protocol and hostname, for example: https://westus2.api.cognitive.microsoft.com).", + "required": true, + "type": "string", + "format": "uri", + "x-ms-skip-url-encoding": true + } + ] + }, + "produces": [ + "application/json" + ], + "consumes": [ + "application/json" + ], + "security": [ + { + "ApiKeyAuth": [] + } + ], + "securityDefinitions": { + "ApiKeyAuth": { + "type": "apiKey", + "name": "Ocp-Apim-Subscription-Key", + "in": "header" + } + }, + "tags": [ + { + "name": "TrialMatcher" + }, + { + "name": "OncoPhenotype" + }, + { + "name": "RadiologyInsights" + }, + { + "name": "PatientTimeline" + } + ], + "paths": { + "/onco-phenotype/jobs": { + "post": { + "operationId": "OncoPhenotype_CreateJob", + "tags": [ + "OncoPhenotype" + ], + "summary": "Create Onco Phenotype job", + "description": "Creates an Onco Phenotype job with the given request body.", + "parameters": [ + { + "$ref": "#/parameters/Azure.Core.Foundations.ApiVersionParameter" + }, + { + "$ref": "#/parameters/Azure.Core.RepeatabilityRequestHeaders.repeatabilityRequestId" + }, + { + "$ref": "#/parameters/Azure.Core.RepeatabilityRequestHeaders.repeatabilityFirstSent" + }, + { + "name": "body", + "in": "body", + "required": true, + "schema": { + "$ref": "#/definitions/OncoPhenotypeData" + } + } + ], + "responses": { + "202": { + "description": "The request has been accepted for processing, but processing has not yet completed.", + "schema": { + "type": "object", + "description": "Provides status details for long running operations.", + "properties": { + "id": { + "$ref": "#/definitions/Azure.Core.uuid", + "description": "The unique ID of the operation.", + "readOnly": true + }, + "status": { + "$ref": "#/definitions/JobStatus", + "description": "The status of the operation", + "readOnly": true + }, + "createdDateTime": { + "type": "string", + "format": "date-time", + "description": "The date and time when the processing job was created.", + "readOnly": true + }, + "expirationDateTime": { + "type": "string", + "format": "date-time", + "description": "The date and time when the processing job is set to expire.", + "readOnly": true + }, + "lastUpdateDateTime": { + "type": "string", + "format": "date-time", + "description": "The date and time when the processing job was last updated.", + "readOnly": true + }, + "error": { + "$ref": "#/definitions/Azure.Core.Foundations.Error", + "description": "Error object that describes the error when status is \"Failed\"." + }, + "result": { + "$ref": "#/definitions/OncoPhenotypeInferenceResult", + "description": "The result of the operation." + } + }, + "required": [ + "id", + "status" + ] + }, + "headers": { + "Operation-Location": { + "type": "string", + "format": "uri", + "description": "The location for monitoring the operation state." + }, + "Retry-After": { + "type": "integer", + "format": "int32", + "description": "The Retry-After header can indicate how long the client should wait before polling the operation status." + }, + "Repeatability-Result": { + "type": "string", + "description": "Indicates whether the repeatable request was accepted or rejected.", + "enum": [ + "accepted", + "rejected" + ], + "x-ms-enum": { + "name": "RepeatabilityResult", + "modelAsString": false, + "values": [ + { + "name": "accepted", + "value": "accepted", + "description": "If the request was accepted and the server guarantees that the server state reflects a single execution of the operation." + }, + { + "name": "rejected", + "value": "rejected", + "description": "If the request was rejected because the combination of Repeatability-First-Sent and Repeatability-Request-ID were invalid\nor because the Repeatability-First-Sent value was outside the range of values held by the server." + } + ] + } + } + } + }, + "default": { + "description": "An unexpected error response.", + "schema": { + "$ref": "#/definitions/Azure.Core.Foundations.ErrorResponse" + }, + "headers": { + "x-ms-error-code": { + "type": "string", + "description": "String error code indicating what went wrong." + } + } + } + }, + "x-ms-examples": { + "Creates an Onco Phenotype job with the given request body.": { + "$ref": "./examples/SuccessfulOncoPhenotypeRequest.json" + } + }, + "x-ms-long-running-operation": true + } + }, + "/onco-phenotype/jobs/{id}": { + "get": { + "operationId": "OncoPhenotype_GetJob", + "tags": [ + "OncoPhenotype" + ], + "summary": "Get Onco Phenotype job details", + "description": "Gets the status and details of the Onco Phenotype job.", + "parameters": [ + { + "$ref": "#/parameters/Azure.Core.Foundations.ApiVersionParameter" + }, + { + "name": "id", + "in": "path", + "description": "A processing job identifier.", + "required": true, + "type": "string", + "format": "uuid" + } + ], + "responses": { + "200": { + "description": "The request has succeeded.", + "schema": { + "$ref": "#/definitions/OncoPhenotypeResult" + }, + "headers": { + "Retry-After": { + "type": "integer", + "format": "int32", + "description": "The Retry-After header can indicate how long the client should wait before polling the operation status." + } + } + }, + "default": { + "description": "An unexpected error response.", + "schema": { + "$ref": "#/definitions/Azure.Core.Foundations.ErrorResponse" + }, + "headers": { + "x-ms-error-code": { + "type": "string", + "description": "String error code indicating what went wrong." + } + } + } + }, + "x-ms-examples": { + "Gets the status and details of the Onco Phenotype job.": { + "$ref": "./examples/SuccessfulOncoPhenotypeResponse.json" + } + } + } + }, + "/patient-timeline/jobs": { + "post": { + "operationId": "PatientTimeline_CreateJob", + "tags": [ + "PatientTimeline" + ], + "summary": "Create Patient Timeline job", + "description": "Creates a Patient Timeline job with the given request body.", + "parameters": [ + { + "$ref": "#/parameters/Azure.Core.Foundations.ApiVersionParameter" + }, + { + "$ref": "#/parameters/Azure.Core.RepeatabilityRequestHeaders.repeatabilityRequestId" + }, + { + "$ref": "#/parameters/Azure.Core.RepeatabilityRequestHeaders.repeatabilityFirstSent" + }, + { + "name": "body", + "in": "body", + "required": true, + "schema": { + "$ref": "#/definitions/PatientTimelineData" + } + } + ], + "responses": { + "202": { + "description": "The request has been accepted for processing, but processing has not yet completed.", + "schema": { + "type": "object", + "description": "Provides status details for long running operations.", + "properties": { + "id": { + "$ref": "#/definitions/Azure.Core.uuid", + "description": "The unique ID of the operation.", + "readOnly": true + }, + "status": { + "$ref": "#/definitions/JobStatus", + "description": "The status of the operation", + "readOnly": true + }, + "createdDateTime": { + "type": "string", + "format": "date-time", + "description": "The date and time when the processing job was created.", + "readOnly": true + }, + "expirationDateTime": { + "type": "string", + "format": "date-time", + "description": "The date and time when the processing job is set to expire.", + "readOnly": true + }, + "lastUpdateDateTime": { + "type": "string", + "format": "date-time", + "description": "The date and time when the processing job was last updated.", + "readOnly": true + }, + "error": { + "$ref": "#/definitions/Azure.Core.Foundations.Error", + "description": "Error object that describes the error when status is \"Failed\"." + }, + "result": { + "$ref": "#/definitions/PatientTimelineInferenceResult", + "description": "The result of the operation." + } + }, + "required": [ + "id", + "status" + ] + }, + "headers": { + "Operation-Location": { + "type": "string", + "format": "uri", + "description": "The location for monitoring the operation state." + }, + "Retry-After": { + "type": "integer", + "format": "int32", + "description": "The Retry-After header can indicate how long the client should wait before polling the operation status." + }, + "Repeatability-Result": { + "type": "string", + "description": "Indicates whether the repeatable request was accepted or rejected.", + "enum": [ + "accepted", + "rejected" + ], + "x-ms-enum": { + "name": "RepeatabilityResult", + "modelAsString": false, + "values": [ + { + "name": "accepted", + "value": "accepted", + "description": "If the request was accepted and the server guarantees that the server state reflects a single execution of the operation." + }, + { + "name": "rejected", + "value": "rejected", + "description": "If the request was rejected because the combination of Repeatability-First-Sent and Repeatability-Request-ID were invalid\nor because the Repeatability-First-Sent value was outside the range of values held by the server." + } + ] + } + } + } + }, + "default": { + "description": "An unexpected error response.", + "schema": { + "$ref": "#/definitions/Azure.Core.Foundations.ErrorResponse" + }, + "headers": { + "x-ms-error-code": { + "type": "string", + "description": "String error code indicating what went wrong." + } + } + } + }, + "x-ms-examples": { + "Creates a Patient Timeline job with the given request body.": { + "$ref": "./examples/SuccessfulPatientTimelineRequest.json" + } + }, + "x-ms-long-running-operation": true + } + }, + "/patient-timeline/jobs/{id}": { + "get": { + "operationId": "PatientTimeline_GetJob", + "tags": [ + "PatientTimeline" + ], + "summary": "Get Patient Timeline job details", + "description": "Gets the status and details of the Patient Timeline job.", + "parameters": [ + { + "$ref": "#/parameters/Azure.Core.Foundations.ApiVersionParameter" + }, + { + "name": "id", + "in": "path", + "description": "A processing job identifier.", + "required": true, + "type": "string", + "format": "uuid" + } + ], + "responses": { + "200": { + "description": "The request has succeeded.", + "schema": { + "$ref": "#/definitions/PatientTimelineResult" + }, + "headers": { + "Retry-After": { + "type": "integer", + "format": "int32", + "description": "The Retry-After header can indicate how long the client should wait before polling the operation status." + } + } + }, + "default": { + "description": "An unexpected error response.", + "schema": { + "$ref": "#/definitions/Azure.Core.Foundations.ErrorResponse" + }, + "headers": { + "x-ms-error-code": { + "type": "string", + "description": "String error code indicating what went wrong." + } + } + } + }, + "x-ms-examples": { + "Gets the status and details of the Patient Timeline job.": { + "$ref": "./examples/SuccessfulPatientTimelineResponse.json" + } + } + } + }, + "/radiology-insights/jobs": { + "post": { + "operationId": "RadiologyInsights_CreateJob", + "tags": [ + "RadiologyInsights" + ], + "summary": "Create Radiology Insights job", + "description": "Creates a Radiology Insights job with the given request body.", + "parameters": [ + { + "$ref": "#/parameters/Azure.Core.Foundations.ApiVersionParameter" + }, + { + "$ref": "#/parameters/Azure.Core.RepeatabilityRequestHeaders.repeatabilityRequestId" + }, + { + "$ref": "#/parameters/Azure.Core.RepeatabilityRequestHeaders.repeatabilityFirstSent" + }, + { + "name": "body", + "in": "body", + "required": true, + "schema": { + "$ref": "#/definitions/RadiologyInsightsData" + } + } + ], + "responses": { + "202": { + "description": "The request has been accepted for processing, but processing has not yet completed.", + "schema": { + "type": "object", + "description": "Provides status details for long running operations.", + "properties": { + "id": { + "$ref": "#/definitions/Azure.Core.uuid", + "description": "The unique ID of the operation.", + "readOnly": true + }, + "status": { + "$ref": "#/definitions/JobStatus", + "description": "The status of the operation", + "readOnly": true + }, + "createdDateTime": { + "type": "string", + "format": "date-time", + "description": "The date and time when the processing job was created.", + "readOnly": true + }, + "expirationDateTime": { + "type": "string", + "format": "date-time", + "description": "The date and time when the processing job is set to expire.", + "readOnly": true + }, + "lastUpdateDateTime": { + "type": "string", + "format": "date-time", + "description": "The date and time when the processing job was last updated.", + "readOnly": true + }, + "error": { + "$ref": "#/definitions/Azure.Core.Foundations.Error", + "description": "Error object that describes the error when status is \"Failed\"." + }, + "result": { + "$ref": "#/definitions/RadiologyInsightsInferenceResult", + "description": "The result of the operation." + } + }, + "required": [ + "id", + "status" + ] + }, + "headers": { + "Operation-Location": { + "type": "string", + "format": "uri", + "description": "The location for monitoring the operation state." + }, + "Retry-After": { + "type": "integer", + "format": "int32", + "description": "The Retry-After header can indicate how long the client should wait before polling the operation status." + }, + "Repeatability-Result": { + "type": "string", + "description": "Indicates whether the repeatable request was accepted or rejected.", + "enum": [ + "accepted", + "rejected" + ], + "x-ms-enum": { + "name": "RepeatabilityResult", + "modelAsString": false, + "values": [ + { + "name": "accepted", + "value": "accepted", + "description": "If the request was accepted and the server guarantees that the server state reflects a single execution of the operation." + }, + { + "name": "rejected", + "value": "rejected", + "description": "If the request was rejected because the combination of Repeatability-First-Sent and Repeatability-Request-ID were invalid\nor because the Repeatability-First-Sent value was outside the range of values held by the server." + } + ] + } + } + } + }, + "default": { + "description": "An unexpected error response.", + "schema": { + "$ref": "#/definitions/Azure.Core.Foundations.ErrorResponse" + }, + "headers": { + "x-ms-error-code": { + "type": "string", + "description": "String error code indicating what went wrong." + } + } + } + }, + "x-ms-examples": { + "Creates a Radiology Insights job with the given request body.": { + "$ref": "./examples/SuccessfulRadiologyInsightsRequest.json" + } + }, + "x-ms-long-running-operation": true + } + }, + "/radiology-insights/jobs/{id}": { + "get": { + "operationId": "RadiologyInsights_GetJob", + "tags": [ + "RadiologyInsights" + ], + "summary": "Get Radiology Insights job details", + "description": "Gets the status and details of the Radiology Insights job.", + "parameters": [ + { + "$ref": "#/parameters/Azure.Core.Foundations.ApiVersionParameter" + }, + { + "name": "id", + "in": "path", + "description": "A processing job identifier.", + "required": true, + "type": "string", + "format": "uuid" + } + ], + "responses": { + "200": { + "description": "The request has succeeded.", + "schema": { + "$ref": "#/definitions/RadiologyInsightsResult" + }, + "headers": { + "Retry-After": { + "type": "integer", + "format": "int32", + "description": "The Retry-After header can indicate how long the client should wait before polling the operation status." + } + } + }, + "default": { + "description": "An unexpected error response.", + "schema": { + "$ref": "#/definitions/Azure.Core.Foundations.ErrorResponse" + }, + "headers": { + "x-ms-error-code": { + "type": "string", + "description": "String error code indicating what went wrong." + } + } + } + }, + "x-ms-examples": { + "Gets the status and details of the Radiology Insights job.": { + "$ref": "./examples/SuccessfulRadiologyInsightsResponse.json" + } + } + } + }, + "/trial-matcher/jobs": { + "post": { + "operationId": "TrialMatcher_CreateJob", + "tags": [ + "TrialMatcher" + ], + "summary": "Create Trial Matcher job", + "description": "Creates a Trial Matcher job with the given request body.", + "parameters": [ + { + "$ref": "#/parameters/Azure.Core.Foundations.ApiVersionParameter" + }, + { + "$ref": "#/parameters/Azure.Core.RepeatabilityRequestHeaders.repeatabilityRequestId" + }, + { + "$ref": "#/parameters/Azure.Core.RepeatabilityRequestHeaders.repeatabilityFirstSent" + }, + { + "name": "body", + "in": "body", + "required": true, + "schema": { + "$ref": "#/definitions/TrialMatcherData" + } + } + ], + "responses": { + "202": { + "description": "The request has been accepted for processing, but processing has not yet completed.", + "schema": { + "type": "object", + "description": "Provides status details for long running operations.", + "properties": { + "id": { + "$ref": "#/definitions/Azure.Core.uuid", + "description": "The unique ID of the operation.", + "readOnly": true + }, + "status": { + "$ref": "#/definitions/JobStatus", + "description": "The status of the operation", + "readOnly": true + }, + "createdDateTime": { + "type": "string", + "format": "date-time", + "description": "The date and time when the processing job was created.", + "readOnly": true + }, + "expirationDateTime": { + "type": "string", + "format": "date-time", + "description": "The date and time when the processing job is set to expire.", + "readOnly": true + }, + "lastUpdateDateTime": { + "type": "string", + "format": "date-time", + "description": "The date and time when the processing job was last updated.", + "readOnly": true + }, + "error": { + "$ref": "#/definitions/Azure.Core.Foundations.Error", + "description": "Error object that describes the error when status is \"Failed\"." + }, + "result": { + "$ref": "#/definitions/TrialMatcherInferenceResult", + "description": "The result of the operation." + } + }, + "required": [ + "id", + "status" + ] + }, + "headers": { + "Operation-Location": { + "type": "string", + "format": "uri", + "description": "The location for monitoring the operation state." + }, + "Retry-After": { + "type": "integer", + "format": "int32", + "description": "The Retry-After header can indicate how long the client should wait before polling the operation status." + }, + "Repeatability-Result": { + "type": "string", + "description": "Indicates whether the repeatable request was accepted or rejected.", + "enum": [ + "accepted", + "rejected" + ], + "x-ms-enum": { + "name": "RepeatabilityResult", + "modelAsString": false, + "values": [ + { + "name": "accepted", + "value": "accepted", + "description": "If the request was accepted and the server guarantees that the server state reflects a single execution of the operation." + }, + { + "name": "rejected", + "value": "rejected", + "description": "If the request was rejected because the combination of Repeatability-First-Sent and Repeatability-Request-ID were invalid\nor because the Repeatability-First-Sent value was outside the range of values held by the server." + } + ] + } + } + } + }, + "default": { + "description": "An unexpected error response.", + "schema": { + "$ref": "#/definitions/Azure.Core.Foundations.ErrorResponse" + }, + "headers": { + "x-ms-error-code": { + "type": "string", + "description": "String error code indicating what went wrong." + } + } + } + }, + "x-ms-examples": { + "Creates a Trial Matcher job with the given request body.": { + "$ref": "./examples/SuccessfulTrialMatcherRequest.json" + } + }, + "x-ms-long-running-operation": true + } + }, + "/trial-matcher/jobs/{id}": { + "get": { + "operationId": "TrialMatcher_GetJob", + "tags": [ + "TrialMatcher" + ], + "summary": "Get Trial Matcher job details", + "description": "Gets the status and details of the Trial Matcher job.", + "parameters": [ + { + "$ref": "#/parameters/Azure.Core.Foundations.ApiVersionParameter" + }, + { + "name": "id", + "in": "path", + "description": "A processing job identifier.", + "required": true, + "type": "string", + "format": "uuid" + } + ], + "responses": { + "200": { + "description": "The request has succeeded.", + "schema": { + "$ref": "#/definitions/TrialMatcherResult" + }, + "headers": { + "Retry-After": { + "type": "integer", + "format": "int32", + "description": "The Retry-After header can indicate how long the client should wait before polling the operation status." + } + } + }, + "default": { + "description": "An unexpected error response.", + "schema": { + "$ref": "#/definitions/Azure.Core.Foundations.ErrorResponse" + }, + "headers": { + "x-ms-error-code": { + "type": "string", + "description": "String error code indicating what went wrong." + } + } + } + }, + "x-ms-examples": { + "Gets the status and details of the Trial Matcher job.": { + "$ref": "./examples/SuccessfulTrialMatcherResponse.json" + } + } + } + } + }, + "definitions": { + "AgeMismatchInference": { + "type": "object", + "description": "A notification for age mismatch is displayed when the age mentioned in a document for a specific patient does not match the age specified in the patient information.", + "allOf": [ + { + "$ref": "#/definitions/RadiologyInsightsInference" + } + ], + "x-ms-discriminator-value": "ageMismatch" + }, + "AreaGeometry": { + "type": "object", + "description": "`GeoJSON` geometry, representing the area circle's center.", + "properties": { + "type": { + "$ref": "#/definitions/GeoJsonGeometryType", + "description": "`GeoJSON` geometry type." + }, + "coordinates": { + "type": "array", + "description": "Coordinates of the area circle's center, represented according to the `GeoJSON` standard.\nThis is an array of 2 decimal numbers, longitude and latitude (precisely in this order).", + "minItems": 2, + "maxItems": 2, + "items": { + "type": "number", + "format": "float" + } + } + }, + "required": [ + "type", + "coordinates" + ] + }, + "AreaProperties": { + "type": "object", + "description": "`GeoJSON` object properties.", + "properties": { + "subType": { + "$ref": "#/definitions/GeoJsonPropertiesSubType", + "description": "`GeoJSON` object sub-type." + }, + "radius": { + "type": "number", + "format": "double", + "description": "The radius of the area's circle, in meters." + } + }, + "required": [ + "subType", + "radius" + ] + }, + "Azure.Core.Foundations.Error": { + "type": "object", + "description": "The error object.", + "properties": { + "code": { + "type": "string", + "description": "One of a server-defined set of error codes." + }, + "message": { + "type": "string", + "description": "A human-readable representation of the error." + }, + "target": { + "type": "string", + "description": "The target of the error." + }, + "details": { + "type": "array", + "description": "An array of details about specific errors that led to this reported error.", + "items": { + "$ref": "#/definitions/Azure.Core.Foundations.Error" + }, + "x-ms-identifiers": [] + }, + "innererror": { + "$ref": "#/definitions/Azure.Core.Foundations.InnerError", + "description": "An object containing more specific information than the current object about the error." + } + }, + "required": [ + "code", + "message" + ] + }, + "Azure.Core.Foundations.ErrorResponse": { + "type": "object", + "description": "A response containing error details.", + "properties": { + "error": { + "$ref": "#/definitions/Azure.Core.Foundations.Error", + "description": "The error object." + } + }, + "required": [ + "error" + ] + }, + "Azure.Core.Foundations.InnerError": { + "type": "object", + "description": "An object containing more specific information about the error. As per Microsoft One API guidelines - https://github.com/Microsoft/api-guidelines/blob/vNext/Guidelines.md#7102-error-condition-responses.", + "properties": { + "code": { + "type": "string", + "description": "One of a server-defined set of error codes." + }, + "innererror": { + "$ref": "#/definitions/Azure.Core.Foundations.InnerError", + "description": "Inner error." + } + } + }, + "Azure.Core.uuid": { + "type": "string", + "format": "uuid", + "description": "Universally Unique Identifier" + }, + "ClinicalCodedElement": { + "type": "object", + "description": "A piece of clinical information, expressed as a code in a clinical coding system.", + "properties": { + "system": { + "type": "string", + "description": "The clinical coding system, e.g. ICD-10, SNOMED-CT, UMLS." + }, + "code": { + "type": "string", + "description": "The code within the given clinical coding system." + }, + "name": { + "type": "string", + "description": "The name of this coded concept in the coding system." + }, + "value": { + "type": "string", + "description": "A value associated with the code within the given clinical coding system." + } + }, + "required": [ + "system", + "code" + ] + }, + "ClinicalDocumentType": { + "type": "string", + "description": "The type of the clinical document.", + "enum": [ + "consultation", + "dischargeSummary", + "historyAndPhysical", + "radiologyReport", + "procedure", + "progress", + "laboratory", + "pathologyReport" + ], + "x-ms-enum": { + "name": "ClinicalDocumentType", + "modelAsString": true, + "values": [ + { + "name": "Consultation", + "value": "consultation" + }, + { + "name": "DischargeSummary", + "value": "dischargeSummary" + }, + { + "name": "HistoryAndPhysical", + "value": "historyAndPhysical" + }, + { + "name": "RadiologyReport", + "value": "radiologyReport" + }, + { + "name": "Procedure", + "value": "procedure" + }, + { + "name": "Progress", + "value": "progress" + }, + { + "name": "Laboratory", + "value": "laboratory" + }, + { + "name": "PathologyReport", + "value": "pathologyReport" + } + ] + } + }, + "ClinicalNoteEvidence": { + "type": "object", + "description": "A piece of evidence from a clinical note (text document).", + "properties": { + "id": { + "type": "string", + "description": "The identifier of the document containing the evidence." + }, + "text": { + "type": "string", + "description": "The actual text span which is evidence for the inference." + }, + "offset": { + "type": "integer", + "format": "int32", + "description": "The start index of the evidence text span in the document (0 based).", + "minimum": 0 + }, + "length": { + "type": "integer", + "format": "int32", + "description": "The length of the evidence text span.", + "minimum": 1 + } + }, + "required": [ + "id", + "offset", + "length" + ] + }, + "ClinicalTrialMetadata": { + "type": "object", + "description": "Trial data which is of interest to the potential participant.", + "properties": { + "phases": { + "type": "array", + "description": "Phases which are relevant for the clinical trial.\nEach clinical trial can be in a certain phase or in multiple phases.", + "items": { + "$ref": "#/definitions/ClinicalTrialPhase" + } + }, + "studyType": { + "$ref": "#/definitions/ClinicalTrialStudyType", + "description": "Possible study types of a clinical trial." + }, + "recruitmentStatus": { + "$ref": "#/definitions/ClinicalTrialRecruitmentStatus", + "description": "Possible recruitment status of a clinical trial." + }, + "conditions": { + "type": "array", + "description": "Medical conditions and their synonyms which are relevant for the clinical trial, given as strings.", + "minItems": 1, + "items": { + "type": "string" + } + }, + "sponsors": { + "type": "array", + "description": "Sponsors/collaborators involved with the trial.", + "items": { + "type": "string" + } + }, + "contacts": { + "type": "array", + "description": "Contact details of the trial administrators, for patients that want to participate in the trial.", + "items": { + "$ref": "#/definitions/ContactDetails" + }, + "x-ms-identifiers": [] + }, + "facilities": { + "type": "array", + "description": "Research facilities where the clinical trial is conducted.", + "items": { + "$ref": "#/definitions/ClinicalTrialResearchFacility" + }, + "x-ms-identifiers": [] + } + }, + "required": [ + "conditions" + ] + }, + "ClinicalTrialPhase": { + "type": "string", + "description": "Possible phases of a clinical trial.", + "enum": [ + "notApplicable", + "earlyPhase1", + "phase1", + "phase2", + "phase3", + "phase4" + ], + "x-ms-enum": { + "name": "ClinicalTrialPhase", + "modelAsString": true, + "values": [ + { + "name": "NotApplicable", + "value": "notApplicable" + }, + { + "name": "EarlyPhase1", + "value": "earlyPhase1" + }, + { + "name": "Phase1", + "value": "phase1" + }, + { + "name": "Phase2", + "value": "phase2" + }, + { + "name": "Phase3", + "value": "phase3" + }, + { + "name": "Phase4", + "value": "phase4" + } + ] + } + }, + "ClinicalTrialPurpose": { + "type": "string", + "description": "Possible purposes of a clinical trial.", + "enum": [ + "notApplicable", + "screening", + "diagnostic", + "prevention", + "healthServicesResearch", + "treatment", + "deviceFeasibility", + "supportiveCare", + "basicScience", + "other" + ], + "x-ms-enum": { + "name": "ClinicalTrialPurpose", + "modelAsString": true, + "values": [ + { + "name": "NotApplicable", + "value": "notApplicable" + }, + { + "name": "Screening", + "value": "screening" + }, + { + "name": "Diagnostic", + "value": "diagnostic" + }, + { + "name": "Prevention", + "value": "prevention" + }, + { + "name": "HealthServicesResearch", + "value": "healthServicesResearch" + }, + { + "name": "Treatment", + "value": "treatment" + }, + { + "name": "DeviceFeasibility", + "value": "deviceFeasibility" + }, + { + "name": "SupportiveCare", + "value": "supportiveCare" + }, + { + "name": "BasicScience", + "value": "basicScience" + }, + { + "name": "Other", + "value": "other" + } + ] + } + }, + "ClinicalTrialRecruitmentStatus": { + "type": "string", + "description": "Possible recruitment status of a clinical trial.", + "enum": [ + "unknownStatus", + "notYetRecruiting", + "recruiting", + "enrollingByInvitation" + ], + "x-ms-enum": { + "name": "ClinicalTrialRecruitmentStatus", + "modelAsString": true, + "values": [ + { + "name": "UnknownStatus", + "value": "unknownStatus" + }, + { + "name": "NotYetRecruiting", + "value": "notYetRecruiting" + }, + { + "name": "Recruiting", + "value": "recruiting" + }, + { + "name": "EnrollingByInvitation", + "value": "enrollingByInvitation" + } + ] + } + }, + "ClinicalTrialRegistryFilter": { + "type": "object", + "description": "A filter defining a subset of clinical trials from a given clinical trial registry (e.g. clinicaltrials.gov).", + "properties": { + "conditions": { + "type": "array", + "description": "Trials with any of the given medical conditions will be included in the selection (provided that other limitations are satisfied).\nLeaving this list empty will not limit the medical conditions.", + "items": { + "type": "string" + } + }, + "studyTypes": { + "type": "array", + "description": "Trials with any of the given study types will be included in the selection (provided that other limitations are satisfied).\nLeaving this list empty will not limit the study types.", + "items": { + "$ref": "#/definitions/ClinicalTrialStudyType" + } + }, + "recruitmentStatuses": { + "type": "array", + "description": "Trials with any of the given recruitment statuses will be included in the selection (provided that other limitations are satisfied).\nLeaving this list empty will not limit the recruitment statuses.", + "items": { + "$ref": "#/definitions/ClinicalTrialRecruitmentStatus" + } + }, + "sponsors": { + "type": "array", + "description": "Trials with any of the given sponsors will be included in the selection (provided that other limitations are satisfied).\nLeaving this list empty will not limit the sponsors.", + "items": { + "type": "string" + } + }, + "phases": { + "type": "array", + "description": "Trials with any of the given phases will be included in the selection (provided that other limitations are satisfied).\nLeaving this list empty will not limit the phases.", + "items": { + "$ref": "#/definitions/ClinicalTrialPhase" + } + }, + "purposes": { + "type": "array", + "description": "Trials with any of the given purposes will be included in the selection (provided that other limitations are satisfied).\nLeaving this list empty will not limit the purposes.", + "items": { + "$ref": "#/definitions/ClinicalTrialPurpose" + } + }, + "ids": { + "type": "array", + "description": "Trials with any of the given identifiers will be included in the selection (provided that other limitations are satisfied).\nLeaving this list empty will not limit the trial identifiers.", + "items": { + "type": "string" + } + }, + "sources": { + "type": "array", + "description": "Trials with any of the given sources will be included in the selection (provided that other limitations are satisfied).\nLeaving this list empty will not limit the sources.", + "items": { + "$ref": "#/definitions/ClinicalTrialSource" + } + }, + "facilityNames": { + "type": "array", + "description": "Trials with any of the given facility names will be included in the selection (provided that other limitations are satisfied).\nLeaving this list empty will not limit the trial facility names.", + "items": { + "type": "string" + } + }, + "facilityLocations": { + "type": "array", + "description": "Trials with any of the given facility locations will be included in the selection (provided that other limitations are satisfied).\nLeaving this list empty will not limit the trial facility locations.", + "items": { + "$ref": "#/definitions/GeographicLocation" + }, + "x-ms-identifiers": [] + }, + "facilityAreas": { + "type": "array", + "description": "Trials with any of the given facility area boundaries will be included in the selection (provided that other limitations are satisfied).\nLeaving this list empty will not limit the trial facility area boundaries.", + "items": { + "$ref": "#/definitions/GeographicArea" + }, + "x-ms-identifiers": [] + } + } + }, + "ClinicalTrialResearchFacility": { + "type": "object", + "description": "Details of a research facility where a clinical trial is conducted.", + "properties": { + "name": { + "type": "string", + "description": "The facility's name." + }, + "city": { + "type": "string", + "description": "City name." + }, + "state": { + "type": "string", + "description": "State name." + }, + "countryOrRegion": { + "type": "string", + "description": "Country/region name." + } + }, + "required": [ + "name", + "countryOrRegion" + ] + }, + "ClinicalTrialSource": { + "type": "string", + "description": "Possible sources of a clinical trial.", + "enum": [ + "custom", + "clinicaltrials.gov" + ], + "x-ms-enum": { + "name": "ClinicalTrialSource", + "modelAsString": true, + "values": [ + { + "name": "Custom", + "value": "custom" + }, + { + "name": "ClinicaltrialsGov", + "value": "clinicaltrials.gov" + } + ] + } + }, + "ClinicalTrialStudyType": { + "type": "string", + "description": "Possible study types of a clinical trial.", + "enum": [ + "interventional", + "observational", + "expandedAccess", + "patientRegistries" + ], + "x-ms-enum": { + "name": "ClinicalTrialStudyType", + "modelAsString": true, + "values": [ + { + "name": "Interventional", + "value": "interventional" + }, + { + "name": "Observational", + "value": "observational" + }, + { + "name": "ExpandedAccess", + "value": "expandedAccess" + }, + { + "name": "PatientRegistries", + "value": "patientRegistries" + } + ] + } + }, + "ClinicalTrials": { + "type": "object", + "description": "The clinical trials that the patient(s) should be matched to. \nThe trial selection can be given as a list of custom clinical trials and/or a list of filters to known clinical trial registries.\nIn case both are given, the resulting trial set is a union of the two sets.", + "properties": { + "customTrials": { + "type": "array", + "description": "A list of clinical trials.", + "minItems": 1, + "items": { + "$ref": "#/definitions/Fhir.R4.ResearchStudy" + } + }, + "registryFilters": { + "type": "array", + "description": "A list of filters, each one creating a selection of trials from a given\nclinical trial registry.", + "minItems": 1, + "items": { + "$ref": "#/definitions/ClinicalTrialRegistryFilter" + }, + "x-ms-identifiers": [] + } + } + }, + "CompleteOrderDiscrepancyInference": { + "type": "object", + "description": "A complete order discrepancy is shown when one or more body parts and/or measurements that should be in the document (because there is a complete order) are not present.", + "properties": { + "orderType": { + "$ref": "#/definitions/Fhir.R4.CodeableConcept", + "description": "Order type : CPT ultrasound complete code for abdomen, retroperitoneal, pelvis or breast." + }, + "missingBodyParts": { + "type": "array", + "description": "List of missing body parts required by a complete order : SNOMED CT codes.", + "items": { + "$ref": "#/definitions/Fhir.R4.CodeableConcept" + } + }, + "missingBodyPartMeasurements": { + "type": "array", + "description": "List of missing body parts that require measurement by a complete order : SNOMED CT codes.", + "items": { + "$ref": "#/definitions/Fhir.R4.CodeableConcept" + } + } + }, + "required": [ + "orderType" + ], + "allOf": [ + { + "$ref": "#/definitions/RadiologyInsightsInference" + } + ], + "x-ms-discriminator-value": "completeOrderDiscrepancy" + }, + "ContactDetails": { + "type": "object", + "description": "A person's contact details.", + "properties": { + "name": { + "type": "string", + "description": "The person's name." + }, + "email": { + "type": "string", + "description": "The person's email." + }, + "phone": { + "type": "string", + "description": "A person's phone number." + } + } + }, + "CriticalResult": { + "type": "object", + "description": "Critical Result consists of two properties.", + "properties": { + "description": { + "type": "string", + "description": "Description : medical problem." + }, + "finding": { + "$ref": "#/definitions/Fhir.R4.Observation", + "description": "Finding linked to the critical result." + } + }, + "required": [ + "description" + ] + }, + "CriticalResultInference": { + "type": "object", + "description": "Critical results refer to findings of utmost importance that may require timely attention due to their potential impact on patient care.", + "properties": { + "result": { + "$ref": "#/definitions/CriticalResult", + "description": "The complete Critical Result, as outlined below, will be reused for the recommendation." + } + }, + "required": [ + "result" + ], + "allOf": [ + { + "$ref": "#/definitions/RadiologyInsightsInference" + } + ], + "x-ms-discriminator-value": "criticalResult" + }, + "DocumentAdministrativeMetadata": { + "type": "object", + "description": "Document administrative metadata", + "properties": { + "orderedProcedures": { + "type": "array", + "description": "List of procedure information associated with the document.", + "minItems": 1, + "items": { + "$ref": "#/definitions/OrderedProcedure" + }, + "x-ms-identifiers": [] + }, + "encounterId": { + "type": "string", + "description": "Reference to the encounter associated with the document." + } + } + }, + "DocumentAuthor": { + "type": "object", + "description": "Document author", + "properties": { + "id": { + "type": "string", + "description": "author id" + }, + "fullName": { + "type": "string", + "description": "Text representation of the full name" + } + } + }, + "DocumentContent": { + "type": "object", + "description": "The content of the patient document.", + "properties": { + "sourceType": { + "$ref": "#/definitions/DocumentContentSourceType", + "description": "The type of the content's source.\nIn case the source type is 'inline', the content is given as a string (for instance, text).\nIn case the source type is 'reference', the content is given as a URI." + }, + "value": { + "type": "string", + "description": "The content of the document, given either inline (as a string) or as a reference (URI)." + } + }, + "required": [ + "sourceType", + "value" + ] + }, + "DocumentContentSourceType": { + "type": "string", + "description": "The type of the content's source. \nIn case the source type is 'inline', the content is given as a string (for instance, text). \nIn case the source type is 'reference', the content is given as a URI.", + "enum": [ + "inline", + "reference" + ], + "x-ms-enum": { + "name": "DocumentContentSourceType", + "modelAsString": true, + "values": [ + { + "name": "Inline", + "value": "inline", + "description": "The content is given as a string (for instance, text)." + }, + { + "name": "Reference", + "value": "reference", + "description": "The content is given as a URI." + } + ] + } + }, + "DocumentType": { + "type": "string", + "description": "The type of the patient document, such as 'note' (text document) or 'fhirBundle' (FHIR JSON document).", + "enum": [ + "note", + "fhirBundle", + "dicom", + "genomicSequencing" + ], + "x-ms-enum": { + "name": "DocumentType", + "modelAsString": true, + "values": [ + { + "name": "Note", + "value": "note" + }, + { + "name": "FhirBundle", + "value": "fhirBundle" + }, + { + "name": "Dicom", + "value": "dicom" + }, + { + "name": "GenomicSequencing", + "value": "genomicSequencing" + } + ] + } + }, + "Encounter": { + "type": "object", + "description": "visit/encounter information", + "properties": { + "id": { + "type": "string", + "description": "The id of the visit." + }, + "period": { + "$ref": "#/definitions/TimePeriod", + "description": "Time period of the visit.\nIn case of admission, use timePeriod.start to indicate the admission time and timePeriod.end to indicate the discharge time." + }, + "class": { + "$ref": "#/definitions/EncounterClass", + "description": "The class of the encounter." + } + }, + "required": [ + "id" + ] + }, + "EncounterClass": { + "type": "string", + "description": "Known values codes that can be used to indicate the class of encounter (TODO://Based on FHIR value set--http://....).", + "enum": [ + "inpatient", + "ambulatory", + "observation", + "emergency", + "virtual", + "healthHome" + ], + "x-ms-enum": { + "name": "EncounterClass", + "modelAsString": true, + "values": [ + { + "name": "InPatient", + "value": "inpatient", + "description": "A patient encounter where a patient is admitted by a hospital or equivalent facility, assigned to a location where patients generally stay at least overnight and provided with room, board, and continuous nursing service." + }, + { + "name": "Ambulatory", + "value": "ambulatory", + "description": "The term ambulatory usually implies that the patient has come to the location and is not assigned to a bed. Sometimes referred to as an outpatient encounter." + }, + { + "name": "Observation", + "value": "observation", + "description": "An encounter where the patient usually will start in different encounter, such as one in the emergency department but then transition to this type of encounter because they require a significant period of treatment and monitoring to determine whether or not their condition warrants an inpatient admission or discharge. " + }, + { + "name": "Emergency", + "value": "emergency", + "description": "A patient encounter that takes place at a dedicated healthcare service delivery location where the patient receives immediate evaluation and treatment, provided until the patient can be discharged or responsibility for the patient's care is transferred elsewhere (for example, the patient could be admitted as an inpatient or transferred to another facility." + }, + { + "name": "Virtual", + "value": "virtual", + "description": "A patient encounter where the patient is not physically present for the encounter, such as in a telehealth encounter, phone call, or electronic communication." + }, + { + "name": "HealthHome", + "value": "healthHome", + "description": "Healthcare encounter that takes place in the residence of the patient or a designee" + } + ] + } + }, + "ExtendedClinicalCodedElement": { + "type": "object", + "description": "A piece of clinical information, expressed as a code in a clinical coding system, extended by semantic information.", + "properties": { + "system": { + "type": "string", + "description": "The clinical coding system, e.g. ICD-10, SNOMED-CT, UMLS." + }, + "code": { + "type": "string", + "description": "The code within the given clinical coding system." + }, + "name": { + "type": "string", + "description": "The name of this coded concept in the coding system." + }, + "value": { + "type": "string", + "description": "A value associated with the code within the given clinical coding system." + }, + "semanticType": { + "type": "string", + "description": "The [UMLS semantic type](https://www.nlm.nih.gov/research/umls/META3_current_semantic_types.html) associated with the coded concept." + }, + "category": { + "type": "string", + "description": "The bio-medical category related to the coded concept, e.g. Diagnosis, Symptom, Medication, Examination." + } + }, + "required": [ + "system", + "code" + ] + }, + "Fhir.R4.Annotation": { + "type": "object", + "description": "A text note which also contains information about who made the statement and when\nBased on [FHIR Annotation](https://www.hl7.org/fhir/R4/datatypes.html#Annotation)", + "properties": { + "authorString": { + "type": "string", + "description": "Individual responsible for the annotation" + }, + "time": { + "$ref": "#/definitions/Fhir.R4.fhirDateTime", + "description": "When the annotation was made" + }, + "text": { + "type": "string", + "description": "The annotation - text content (as markdown)" + } + }, + "required": [ + "text" + ], + "allOf": [ + { + "$ref": "#/definitions/Fhir.R4.Element" + } + ] + }, + "Fhir.R4.CodeableConcept": { + "type": "object", + "description": "Concept - reference to a terminology or just text\nBased on [FHIR CodeableConcept](https://www.hl7.org/fhir/R4/datatypes.html#CodeableConcept)", + "properties": { + "coding": { + "type": "array", + "description": "Code defined by a terminology system", + "items": { + "$ref": "#/definitions/Fhir.R4.Coding" + } + }, + "text": { + "type": "string", + "description": "Plain text representation of the concept" + } + }, + "allOf": [ + { + "$ref": "#/definitions/Fhir.R4.Element" + } + ] + }, + "Fhir.R4.Coding": { + "type": "object", + "description": "A Coding is a representation of a defined concept using a symbol from a defined \"code system\".\nBased on [FHIR Coding](https://www.hl7.org/fhir/R4/datatypes.html#Coding)", + "properties": { + "system": { + "$ref": "#/definitions/Fhir.R4.fhirUri", + "description": "Identity of the terminology system" + }, + "version": { + "type": "string", + "description": "Version of the system - if relevant" + }, + "code": { + "type": "string", + "description": "Symbol in syntax defined by the system" + }, + "display": { + "type": "string", + "description": "Representation defined by the system" + } + }, + "allOf": [ + { + "$ref": "#/definitions/Fhir.R4.Element" + } + ] + }, + "Fhir.R4.Condition": { + "type": "object", + "description": "Detailed information about conditions, problems or diagnoses\nBased on [FHIR Condition](https://www.hl7.org/fhir/R4/condition.html)", + "properties": { + "identifier": { + "type": "array", + "description": "External Ids for this condition", + "items": { + "$ref": "#/definitions/Fhir.R4.Identifier" + } + }, + "clinicalStatus": { + "$ref": "#/definitions/Fhir.R4.CodeableConcept", + "description": "active | recurrence | relapse | inactive | remission | resolved" + }, + "verificationStatus": { + "$ref": "#/definitions/Fhir.R4.CodeableConcept", + "description": "unconfirmed | provisional | differential | confirmed | refuted | entered-in-error" + }, + "category": { + "type": "array", + "description": "problem-list-item | encounter-diagnosis", + "items": { + "$ref": "#/definitions/Fhir.R4.CodeableConcept" + } + }, + "severity": { + "$ref": "#/definitions/Fhir.R4.CodeableConcept", + "description": "Subjective severity of condition" + }, + "code": { + "$ref": "#/definitions/Fhir.R4.CodeableConcept", + "description": "Identification of the condition, problem or diagnosis" + }, + "bodySite": { + "type": "array", + "description": "Anatomical location, if relevant", + "items": { + "$ref": "#/definitions/Fhir.R4.CodeableConcept" + } + }, + "encounter": { + "$ref": "#/definitions/Fhir.R4.Reference", + "description": "Encounter created as part of" + }, + "onsetDateTime": { + "$ref": "#/definitions/Fhir.R4.fhirDateTime", + "description": "Estimated or actual date, date-time, or age" + }, + "onsetAge": { + "$ref": "#/definitions/Fhir.R4.Quantity", + "description": "Estimated or actual date, date-time, or age" + }, + "onsetPeriod": { + "$ref": "#/definitions/Fhir.R4.Period", + "description": "Estimated or actual date, date-time, or age" + }, + "onsetRange": { + "$ref": "#/definitions/Fhir.R4.Range", + "description": "Estimated or actual date, date-time, or age" + }, + "onsetString": { + "type": "string", + "description": "Estimated or actual date, date-time, or age" + }, + "abatementDateTime": { + "$ref": "#/definitions/Fhir.R4.fhirDateTime", + "description": "When in resolution/remission" + }, + "abatementAge": { + "$ref": "#/definitions/Fhir.R4.Quantity", + "description": "When in resolution/remission" + }, + "abatementPeriod": { + "$ref": "#/definitions/Fhir.R4.Period", + "description": "When in resolution/remission" + }, + "abatementRange": { + "$ref": "#/definitions/Fhir.R4.Range", + "description": "When in resolution/remission" + }, + "abatementString": { + "type": "string", + "description": "When in resolution/remission" + }, + "recordedDate": { + "$ref": "#/definitions/Fhir.R4.fhirDateTime", + "description": "Date record was first recorded" + }, + "stage": { + "type": "array", + "description": "stge/grade, usually assessed formally", + "items": { + "$ref": "#/definitions/Fhir.R4.ConditionStage" + }, + "x-ms-identifiers": [] + }, + "note": { + "type": "array", + "description": "Additional information about the Condition", + "items": { + "$ref": "#/definitions/Fhir.R4.Annotation" + } + } + }, + "allOf": [ + { + "$ref": "#/definitions/Fhir.R4.DomainResource" + } + ], + "x-ms-discriminator-value": "Condition" + }, + "Fhir.R4.ConditionStage": { + "type": "object", + "description": "Stage/grade, usually assessed formally\nBased on [FHIR Condition.Stage](https://www.hl7.org/fhir/R4/condition.html)", + "properties": { + "summary": { + "$ref": "#/definitions/Fhir.R4.CodeableConcept", + "description": "Simple summary (disease specific)" + }, + "type": { + "$ref": "#/definitions/Fhir.R4.CodeableConcept", + "description": "Kind of staging" + } + } + }, + "Fhir.R4.ContactDetail": { + "type": "object", + "description": "Contact details (See: https://www.hl7.org/fhir/R4/metadatatypes.html#ContactDetail)", + "properties": { + "name": { + "type": "string", + "description": "Name of an individual to contact" + }, + "telecom": { + "type": "array", + "description": "Contact details for individual or organization", + "items": { + "$ref": "#/definitions/Fhir.R4.ContactPoint" + }, + "x-ms-identifiers": [] + } + }, + "allOf": [ + { + "$ref": "#/definitions/Fhir.R4.Element" + } + ] + }, + "Fhir.R4.ContactPoint": { + "type": "object", + "description": "Details for all kinds of technology mediated contact points for a person or organization, including telephone, email, etc.\nSee https://www.hl7.org/fhir/R4/datatypes.html#ContactPoint", + "properties": { + "system": { + "$ref": "#/definitions/Fhir.R4.ContactPointSystem", + "description": "phone | fax | email | pager | url | sms | other" + }, + "value": { + "type": "string", + "description": "The actual contact point details" + }, + "use": { + "$ref": "#/definitions/Fhir.R4.ContactPointUse", + "description": "home | work | temp | old | mobile - purpose of this contact point" + }, + "rank": { + "type": "integer", + "format": "int32", + "description": "Specify preferred order of use (1 = highest)" + }, + "period": { + "$ref": "#/definitions/Fhir.R4.Period", + "description": "Time period when the contact point was/is in use" + } + } + }, + "Fhir.R4.ContactPointSystem": { + "type": "string", + "description": "Contact Point System\nsee https://www.hl7.org/fhir/R4/valueset-contact-point-system.html", + "enum": [ + "phone", + "fax", + "email", + "pager", + "url", + "sms", + "other" + ], + "x-ms-enum": { + "name": "ContactPointSystem", + "modelAsString": true, + "values": [ + { + "name": "Phone", + "value": "phone", + "description": "Phone" + }, + { + "name": "Fax", + "value": "fax", + "description": "Fax" + }, + { + "name": "Email", + "value": "email", + "description": "Email" + }, + { + "name": "Pager", + "value": "pager", + "description": "Pager" + }, + { + "name": "Url", + "value": "url", + "description": "Url" + }, + { + "name": "Sms", + "value": "sms", + "description": "Sms" + }, + { + "name": "Other", + "value": "other", + "description": "Other" + } + ] + } + }, + "Fhir.R4.ContactPointUse": { + "type": "string", + "description": "Contact Point Use\nSee: \thttp://hl7.org/fhir/ValueSet/contact-point-use", + "enum": [ + "home", + "work", + "temp", + "old", + "mobile" + ], + "x-ms-enum": { + "name": "ContactPointUse", + "modelAsString": true, + "values": [ + { + "name": "Home", + "value": "home", + "description": "Home" + }, + { + "name": "Work", + "value": "work", + "description": "Work" + }, + { + "name": "Temp", + "value": "temp", + "description": "Temp" + }, + { + "name": "Old", + "value": "old", + "description": "Old" + }, + { + "name": "Mobile", + "value": "mobile", + "description": "Mobile" + } + ] + } + }, + "Fhir.R4.DomainResource": { + "type": "object", + "description": "A resource with narrative, extensions, and contained resources\nBased on [FHIR DomainResource](https://www.hl7.org/fhir/domainresource.html)", + "properties": { + "resourceType": { + "type": "string", + "description": "Discriminator property for DomainResource." + }, + "text": { + "$ref": "#/definitions/Fhir.R4.Narrative", + "description": "Text summary of the resource, for human interpretation" + }, + "contained": { + "type": "array", + "description": "Contained, inline Resources", + "items": { + "$ref": "#/definitions/Fhir.R4.Resource" + } + }, + "extension": { + "type": "array", + "description": "Additional Content defined by implementations", + "items": { + "$ref": "#/definitions/Fhir.R4.Extension" + } + }, + "modifierExtension": { + "type": "array", + "description": "Extensions that cannot be ignored", + "items": { + "$ref": "#/definitions/Fhir.R4.Extension" + } + } + }, + "discriminator": "resourceType", + "required": [ + "resourceType" + ], + "allOf": [ + { + "$ref": "#/definitions/Fhir.R4.Resource" + } + ] + }, + "Fhir.R4.Element": { + "type": "object", + "description": "The base definition for all elements contained inside a resource.\nBased on [FHIR Element](https://www.hl7.org/fhir/R4/element.html)", + "properties": { + "id": { + "type": "string", + "description": "Unique id for inter-element referencing" + }, + "extension": { + "type": "array", + "description": "Additional Content defined by implementations", + "items": { + "$ref": "#/definitions/Fhir.R4.Extension" + } + } + } + }, + "Fhir.R4.Extension": { + "type": "object", + "description": "Base for all elements\nBased on [FHIR Element](https://www.hl7.org/fhir/datatypes.html#Element)", + "properties": { + "url": { + "$ref": "#/definitions/Fhir.R4.fhirUri", + "description": "Source of the definition for the extension code - a logical name or a URL." + }, + "valueQuantity": { + "$ref": "#/definitions/Fhir.R4.Quantity", + "description": "Value as Quantity" + }, + "valueCodeableConcept": { + "$ref": "#/definitions/Fhir.R4.CodeableConcept", + "description": "Value as CodeableConcept" + }, + "valueString": { + "type": "string", + "description": "Value as string" + }, + "valueBoolean": { + "type": "boolean", + "description": "Value as boolean" + }, + "valueInteger": { + "type": "integer", + "format": "int32", + "description": "Value as integer" + }, + "valueRange": { + "$ref": "#/definitions/Fhir.R4.Range", + "description": "Value as Range." + }, + "valueRatio": { + "$ref": "#/definitions/Fhir.R4.Ratio", + "description": "Value as Ratio." + }, + "valueSampledData": { + "$ref": "#/definitions/Fhir.R4.SampledData", + "description": "Value as SampledData." + }, + "valueTime": { + "type": "string", + "format": "time", + "description": "Value as time (hh:mm:ss)" + }, + "valueDateTime": { + "$ref": "#/definitions/Fhir.R4.fhirDateTime", + "description": "Value as dateTime." + }, + "valuePeriod": { + "$ref": "#/definitions/Fhir.R4.Period", + "description": "Value as Period." + }, + "valueReference": { + "$ref": "#/definitions/Fhir.R4.Reference", + "description": "Value as reference." + } + }, + "required": [ + "url" + ], + "allOf": [ + { + "$ref": "#/definitions/Fhir.R4.Element" + } + ] + }, + "Fhir.R4.Identifier": { + "type": "object", + "description": "An identifier intended for computation\nBased on [FHIR Identifier](https://www.hl7.org/fhir/R4/identifier.html)", + "properties": { + "use": { + "type": "string", + "description": "usual | official | temp | secondary | old (If known)" + }, + "type": { + "$ref": "#/definitions/Fhir.R4.CodeableConcept", + "description": "Description of identifier" + }, + "system": { + "$ref": "#/definitions/Fhir.R4.fhirUri", + "description": "The namespace for the identifier value" + }, + "value": { + "type": "string", + "description": "The value that is unique" + }, + "period": { + "$ref": "#/definitions/Fhir.R4.Period", + "description": "Time period when id is/was valid for use" + }, + "assigner": { + "$ref": "#/definitions/Fhir.R4.Reference", + "description": "Organization that issued id (may be just text)" + } + }, + "allOf": [ + { + "$ref": "#/definitions/Fhir.R4.Element" + } + ] + }, + "Fhir.R4.Meta": { + "type": "object", + "description": "Metadata about a resource\nBased on [FHIR Meta](https://www.hl7.org/fhir/R4/resource.html#Meta)", + "properties": { + "versionId": { + "type": "string", + "description": "The version specific identifier, as it appears in the version portion of the URL. This value changes when the resource is created, updated, or deleted." + }, + "lastUpdated": { + "$ref": "#/definitions/Fhir.R4.fhirInstant", + "description": "When the resource last changed - e.g. when the version changed." + }, + "source": { + "$ref": "#/definitions/Fhir.R4.fhirUri", + "description": "A uri that identifies the source system of the resource. This provides a minimal amount of Provenance information that can be used to track or differentiate the source of information in the resource. The source may identify another FHIR server, document, message, database, etc." + }, + "profile": { + "type": "array", + "description": "A list of profiles (references to [StructureDefinition](https://www.hl7.org/fhir/structuredefinition.html) resources) that this resource claims to conform to. The URL is a reference to [StructureDefinition.url](https://www.hl7.org/fhir/structuredefinition-definitions.html#StructureDefinition.url).", + "items": { + "$ref": "#/definitions/Fhir.R4.fhirUri" + } + }, + "security": { + "type": "array", + "description": "Security labels applied to this resource. These tags connect specific resources to the overall security policy and infrastructure.", + "items": { + "$ref": "#/definitions/Fhir.R4.Coding" + } + }, + "tag": { + "type": "array", + "description": "Tags applied to this resource. Tags are intended to be used to identify and relate resources to process and workflow, and applications are not required to consider the tags when interpreting the meaning of a resource.", + "items": { + "$ref": "#/definitions/Fhir.R4.Coding" + } + } + } + }, + "Fhir.R4.Narrative": { + "type": "object", + "description": "Any resource that is a [DomainResource](https://www.hl7.org/fhir/domainresource.html) may include a human-readable narrative that contains a summary of the resource and may be used to represent the content of the resource to a human.\nBased on [FHIR Narrative](https://www.hl7.org/fhir/R4/narrative.html#Narrative)", + "properties": { + "status": { + "type": "string", + "description": "generated, extensions, additional, empty" + }, + "div": { + "type": "string", + "description": "xhtml" + } + }, + "required": [ + "status", + "div" + ], + "allOf": [ + { + "$ref": "#/definitions/Fhir.R4.Element" + } + ] + }, + "Fhir.R4.Observation": { + "type": "object", + "description": "Detailed information about observations\nBased on [FHIR Observation](https://www.hl7.org/fhir/R4/observation.html)", + "properties": { + "identifier": { + "type": "array", + "description": "Business Identifier for observation", + "items": { + "$ref": "#/definitions/Fhir.R4.Identifier" + } + }, + "status": { + "$ref": "#/definitions/Fhir.R4.ObservationStatusCodeType", + "description": "registered | preliminary | final | amended +" + }, + "category": { + "type": "array", + "description": "Classification of type of observation", + "items": { + "$ref": "#/definitions/Fhir.R4.CodeableConcept" + } + }, + "code": { + "$ref": "#/definitions/Fhir.R4.CodeableConcept", + "description": "Type of observation (code / type)" + }, + "subject": { + "$ref": "#/definitions/Fhir.R4.Reference", + "description": "Who and/or what the observation is about" + }, + "encounter": { + "$ref": "#/definitions/Fhir.R4.Reference", + "description": "Healthcare event during which this observation is made" + }, + "effectiveDateTime": { + "$ref": "#/definitions/Fhir.R4.fhirDateTime", + "description": "Clinically relevant time/time-period for observation" + }, + "effectivePeriod": { + "$ref": "#/definitions/Fhir.R4.Period", + "description": "Clinically relevant time/time-period for observation" + }, + "effectiveInstant": { + "$ref": "#/definitions/Fhir.R4.fhirInstant", + "description": "Clinically relevant time/time-period for observation" + }, + "issued": { + "$ref": "#/definitions/Fhir.R4.fhirInstant", + "description": "Date/Time this version was made available" + }, + "valueQuantity": { + "$ref": "#/definitions/Fhir.R4.Quantity", + "description": "Actual result" + }, + "valueCodeableConcept": { + "$ref": "#/definitions/Fhir.R4.CodeableConcept", + "description": "Actual result" + }, + "valueString": { + "type": "string", + "description": "Actual result" + }, + "valueBoolean": { + "type": "boolean", + "description": "Actual result" + }, + "valueInteger": { + "type": "integer", + "format": "int32", + "description": "Actual result" + }, + "valueRange": { + "$ref": "#/definitions/Fhir.R4.Range", + "description": "Actual result" + }, + "valueRatio": { + "$ref": "#/definitions/Fhir.R4.Ratio", + "description": "Actual result" + }, + "valueSampledData": { + "$ref": "#/definitions/Fhir.R4.SampledData", + "description": "Actual result" + }, + "valueTime": { + "type": "string", + "format": "time", + "description": "Actual result" + }, + "valueDateTime": { + "$ref": "#/definitions/Fhir.R4.fhirDateTime", + "description": "Actual result" + }, + "valuePeriod": { + "$ref": "#/definitions/Fhir.R4.Period", + "description": "Actual result" + }, + "dataAbsentReason": { + "$ref": "#/definitions/Fhir.R4.CodeableConcept", + "description": "Why the result is missing" + }, + "interpretation": { + "type": "array", + "description": "High, low, normal, etc.", + "items": { + "$ref": "#/definitions/Fhir.R4.CodeableConcept" + } + }, + "note": { + "type": "array", + "description": "Comments about the observation", + "items": { + "$ref": "#/definitions/Fhir.R4.Annotation" + } + }, + "bodySite": { + "$ref": "#/definitions/Fhir.R4.CodeableConcept", + "description": "Observed body part" + }, + "method": { + "$ref": "#/definitions/Fhir.R4.CodeableConcept", + "description": "How it was done" + }, + "referenceRange": { + "type": "array", + "description": "Provides guide for interpretation", + "items": { + "$ref": "#/definitions/Fhir.R4.ObservationReferenceRange" + }, + "x-ms-identifiers": [] + }, + "hasMember": { + "type": "array", + "description": "Related resource that belongs to the Observation group", + "items": { + "$ref": "#/definitions/Fhir.R4.Reference" + } + }, + "derivedFrom": { + "type": "array", + "description": "Related measurements the observation is made from", + "items": { + "$ref": "#/definitions/Fhir.R4.Reference" + } + }, + "component": { + "type": "array", + "description": "Component results", + "items": { + "$ref": "#/definitions/Fhir.R4.ObservationComponent" + } + } + }, + "required": [ + "status", + "code" + ], + "allOf": [ + { + "$ref": "#/definitions/Fhir.R4.DomainResource" + } + ], + "x-ms-discriminator-value": "Observation" + }, + "Fhir.R4.ObservationComponent": { + "type": "object", + "description": "Component results\nBased on [FHIR Observation.component](https://www.hl7.org/fhir/R4/observation.html)", + "properties": { + "code": { + "$ref": "#/definitions/Fhir.R4.CodeableConcept", + "description": "Type of component observation (code / type)" + }, + "valueQuantity": { + "$ref": "#/definitions/Fhir.R4.Quantity", + "description": "Value as Quantity" + }, + "valueCodeableConcept": { + "$ref": "#/definitions/Fhir.R4.CodeableConcept", + "description": "Value as CodeableConcept" + }, + "valueString": { + "type": "string", + "description": "Value as string" + }, + "valueBoolean": { + "type": "boolean", + "description": "Value as boolean" + }, + "valueInteger": { + "type": "integer", + "format": "int32", + "description": "Value as integer" + }, + "valueRange": { + "$ref": "#/definitions/Fhir.R4.Range", + "description": "Value as Range." + }, + "valueRatio": { + "$ref": "#/definitions/Fhir.R4.Ratio", + "description": "Value as Ratio." + }, + "valueSampledData": { + "$ref": "#/definitions/Fhir.R4.SampledData", + "description": "Value as SampledData." + }, + "valueTime": { + "type": "string", + "format": "time", + "description": "Value as time (hh:mm:ss)" + }, + "valueDateTime": { + "$ref": "#/definitions/Fhir.R4.fhirDateTime", + "description": "Value as dateTime." + }, + "valuePeriod": { + "$ref": "#/definitions/Fhir.R4.Period", + "description": "Value as Period." + }, + "valueReference": { + "$ref": "#/definitions/Fhir.R4.Reference", + "description": "Value as reference." + }, + "dataAbsentReason": { + "$ref": "#/definitions/Fhir.R4.CodeableConcept", + "description": "Why the component result is missing" + }, + "interpretation": { + "type": "array", + "description": "High, low, normal, etc.", + "items": { + "$ref": "#/definitions/Fhir.R4.CodeableConcept" + } + }, + "referenceRange": { + "type": "array", + "description": "Provides guide for interpretation of component result", + "items": { + "$ref": "#/definitions/Fhir.R4.ObservationReferenceRange" + }, + "x-ms-identifiers": [] + } + }, + "required": [ + "code" + ], + "allOf": [ + { + "$ref": "#/definitions/Fhir.R4.Element" + } + ] + }, + "Fhir.R4.ObservationReferenceRange": { + "type": "object", + "description": "Provides guide for interpretation of component result\nBased on [FHIR Observation.referenceRange](https://www.hl7.org/fhir/R4/observation.html)", + "properties": { + "low": { + "$ref": "#/definitions/Fhir.R4.Quantity", + "description": "Low Range, if relevant" + }, + "high": { + "$ref": "#/definitions/Fhir.R4.Quantity", + "description": "High Range, if relevant" + }, + "type": { + "$ref": "#/definitions/Fhir.R4.CodeableConcept", + "description": "Reference range qualifier" + }, + "appliesTo": { + "type": "array", + "description": "Reference range population", + "items": { + "$ref": "#/definitions/Fhir.R4.CodeableConcept" + } + }, + "age": { + "$ref": "#/definitions/Fhir.R4.Range", + "description": "Applicable age range, if relevant" + }, + "text": { + "type": "string", + "description": "Text based reference range in an observation" + } + } + }, + "Fhir.R4.ObservationStatusCodeType": { + "type": "string", + "description": "Observation Status\nBased on [FHIR ObservationStatus](https://www.hl7.org/fhir/R4/valueset-observation-status.html)", + "enum": [ + "registered", + "preliminary", + "final", + "amended", + "corrected", + "cancelled", + "entered-in-error", + "unknown" + ], + "x-ms-enum": { + "name": "ObservationStatusCodeType", + "modelAsString": true, + "values": [ + { + "name": "Registered", + "value": "registered", + "description": "The existence of the observation is registered, but there is no result yet available." + }, + { + "name": "Preliminary", + "value": "preliminary", + "description": "This is an initial or interim observation: data may be incomplete or unverified." + }, + { + "name": "Final", + "value": "final", + "description": "The observation is complete and verified by an authorized person." + }, + { + "name": "Amended", + "value": "amended", + "description": "Subsequent to being Final, the observation has been modified subsequent. This includes updates/new information and corrections." + }, + { + "name": "Corrected", + "value": "corrected", + "description": "Subsequent to being Final, the observation has been modified to correct an error in the test result." + }, + { + "name": "Cancelled", + "value": "cancelled", + "description": "The observation is unavailable because the measurement was not started or not completed (also sometimes called \"aborted\")." + }, + { + "name": "EnteredInError", + "value": "entered-in-error", + "description": "The observation has been withdrawn following previous final release." + }, + { + "name": "Unknown", + "value": "unknown", + "description": "The observation status is unknown. Note that \"unknown\" is a value of last resort and every attempt should be made to provide a meaningful value other than \"unknown\"." + } + ] + } + }, + "Fhir.R4.Period": { + "type": "object", + "description": "A time period defined by a start and end date and optionally time\nBased on [FHIR Period](https://www.hl7.org/fhir/R4/datatypes.html#Period)", + "properties": { + "start": { + "$ref": "#/definitions/Fhir.R4.fhirDateTime", + "description": "Starting time with inclusive boundary" + }, + "end": { + "$ref": "#/definitions/Fhir.R4.fhirDateTime", + "description": "End time with inclusive boundary, if not ongoing" + } + }, + "allOf": [ + { + "$ref": "#/definitions/Fhir.R4.Element" + } + ] + }, + "Fhir.R4.Quantity": { + "type": "object", + "description": "A measured or measurable amount\nBased on [FHIR Quantity](https://www.hl7.org/fhir/R4/datatypes.html#Quantity)", + "properties": { + "value": { + "type": "number", + "format": "double", + "description": "Numerical value (with implicit precision)" + }, + "comparator": { + "type": "string", + "description": "< | <= | >= | > - how to understand the value" + }, + "unit": { + "type": "string", + "description": "Unit representation" + }, + "system": { + "$ref": "#/definitions/Fhir.R4.fhirUri", + "description": "System that defines coded unit form" + }, + "code": { + "type": "string", + "description": "Coded form of the unit" + } + }, + "allOf": [ + { + "$ref": "#/definitions/Fhir.R4.Element" + } + ] + }, + "Fhir.R4.Range": { + "type": "object", + "description": "A set of ordered Quantities defined by a low and high limit\nBased on [FHIR Range](https://www.hl7.org/fhir/R4/datatypes.html#Range)", + "properties": { + "low": { + "$ref": "#/definitions/Fhir.R4.Quantity", + "description": "Low limit" + }, + "high": { + "$ref": "#/definitions/Fhir.R4.Quantity", + "description": "High limit" + } + }, + "allOf": [ + { + "$ref": "#/definitions/Fhir.R4.Element" + } + ] + }, + "Fhir.R4.Ratio": { + "type": "object", + "description": "A ratio of two Quantity values - a numerator and a denominator\nBased on [FHIR Ratio](https://www.hl7.org/fhir/R4/datatypes.html#Ratio)", + "properties": { + "numerator": { + "$ref": "#/definitions/Fhir.R4.Quantity", + "description": "Numerator value" + }, + "denominator": { + "$ref": "#/definitions/Fhir.R4.Quantity", + "description": "Denominator value" + } + }, + "allOf": [ + { + "$ref": "#/definitions/Fhir.R4.Element" + } + ] + }, + "Fhir.R4.Reference": { + "type": "object", + "description": "A reference from one resource to another\nBased on [FHIR Reference](https://www.hl7.org/fhir/R4/references.html)", + "properties": { + "reference": { + "type": "string", + "description": "Literal reference, Relative, internal or absolute URL" + }, + "type": { + "$ref": "#/definitions/Fhir.R4.fhirUri", + "description": "Type the reference refers to (e.g. \"Patient\")" + }, + "identifier": { + "$ref": "#/definitions/Fhir.R4.Identifier", + "description": "Logical reference, when literal reference is not known" + }, + "display": { + "type": "string", + "description": "Text alternative for the resource" + } + }, + "allOf": [ + { + "$ref": "#/definitions/Fhir.R4.Element" + } + ] + }, + "Fhir.R4.ResearchStudy": { + "type": "object", + "description": "Detailed information about Research Study \nBased on [FHIR ResearchStudy](https://www.hl7.org/fhir/R4/researchstudy.html)", + "properties": { + "identifier": { + "type": "array", + "description": "Business Identifier for study", + "items": { + "$ref": "#/definitions/Fhir.R4.Identifier" + } + }, + "title": { + "type": "string", + "description": "Name for this study" + }, + "protocol": { + "type": "array", + "description": "Steps followed in executing study", + "items": { + "$ref": "#/definitions/Fhir.R4.Reference" + } + }, + "partOf": { + "type": "array", + "description": "Part of larger study", + "items": { + "$ref": "#/definitions/Fhir.R4.Reference" + } + }, + "status": { + "$ref": "#/definitions/Fhir.R4.ResearchStudyStatusCodeType", + "description": "active | administratively-completed | approved | closed-to-accrual | closed-to-accrual-and-intervention | completed | disapproved | in-review | temporarily-closed-to-accrual | temporarily-closed-to-accrual-and-intervention | withdrawn" + }, + "primaryPurposeType": { + "$ref": "#/definitions/Fhir.R4.CodeableConcept", + "description": "treatment | prevention | diagnostic | supportive-care | screening | health-services-research | basic-science | device-feasibility" + }, + "phase": { + "$ref": "#/definitions/Fhir.R4.CodeableConcept", + "description": "n-a | early-phase-1 | phase-1 | phase-1-phase-2 | phase-2 | phase-2-phase-3 | phase-3 | phase-4" + }, + "category": { + "type": "array", + "description": "Classifications for the study", + "items": { + "$ref": "#/definitions/Fhir.R4.CodeableConcept" + } + }, + "focus": { + "type": "array", + "description": "Drugs, devices, etc. under study", + "items": { + "$ref": "#/definitions/Fhir.R4.CodeableConcept" + } + }, + "condition": { + "type": "array", + "description": "Condition being studied", + "items": { + "$ref": "#/definitions/Fhir.R4.CodeableConcept" + } + }, + "contact": { + "type": "array", + "description": "Contact details for the study", + "items": { + "$ref": "#/definitions/Fhir.R4.ContactDetail" + } + }, + "keyword": { + "type": "array", + "description": "Used to search for the study", + "items": { + "$ref": "#/definitions/Fhir.R4.CodeableConcept" + } + }, + "location": { + "type": "array", + "description": "Geographic region(s) for study", + "items": { + "$ref": "#/definitions/Fhir.R4.CodeableConcept" + } + }, + "description": { + "type": "string", + "description": "What this is study doing" + }, + "enrollment": { + "type": "array", + "description": "Inclusion & exclusion criteria", + "items": { + "$ref": "#/definitions/Fhir.R4.Reference" + } + }, + "period": { + "$ref": "#/definitions/Fhir.R4.Period", + "description": "When the study began and ended" + }, + "sponsor": { + "$ref": "#/definitions/Fhir.R4.Reference", + "description": "Organization that initiates and is legally responsible for the study" + }, + "principalInvestigator": { + "$ref": "#/definitions/Fhir.R4.Reference", + "description": "Researcher who oversees multiple aspects of the study" + }, + "site": { + "type": "array", + "description": "Facility where study activities are conducted", + "items": { + "$ref": "#/definitions/Fhir.R4.Reference" + } + }, + "reasonStopped": { + "$ref": "#/definitions/Fhir.R4.CodeableConcept", + "description": "accrual-goal-met | closed-due-to-toxicity | closed-due-to-lack-of-study-progress | temporarily-closed-per-study-design" + }, + "note": { + "type": "array", + "description": "Comments made about the study", + "items": { + "$ref": "#/definitions/Fhir.R4.Annotation" + } + }, + "arm": { + "type": "array", + "description": "Defined path through the study for a subject", + "items": { + "type": "object", + "properties": { + "name": { + "type": "string", + "description": "Label for study arm" + }, + "type": { + "$ref": "#/definitions/Fhir.R4.CodeableConcept", + "description": "Categorization of study arm" + }, + "description": { + "type": "string", + "description": "Short explanation of study path" + } + }, + "required": [ + "name" + ] + }, + "x-ms-identifiers": [] + }, + "objective": { + "type": "array", + "description": "A goal for the study", + "items": { + "type": "object", + "properties": { + "name": { + "type": "string", + "description": "Label for the objective" + }, + "type": { + "$ref": "#/definitions/Fhir.R4.CodeableConcept", + "description": "primary | secondary | exploratory" + } + }, + "required": [ + "name" + ] + }, + "x-ms-identifiers": [] + } + }, + "required": [ + "status" + ], + "allOf": [ + { + "$ref": "#/definitions/Fhir.R4.DomainResource" + } + ], + "x-ms-discriminator-value": "ResearchStudy" + }, + "Fhir.R4.ResearchStudyStatusCodeType": { + "type": "string", + "description": "https://www.hl7.org/fhir/R4/codesystem-research-study-status.html", + "enum": [ + "active", + "administratively-completed", + "approved", + "closed-to-accrual", + "closed-to-accrual-and-intervention", + "completed", + "disapproved", + "in-review", + "temporarily-closed-to-accrual", + "temporarily-closed-to-accrual-and-intervention", + "withdrawn" + ], + "x-ms-enum": { + "name": "ResearchStudyStatusCodeType", + "modelAsString": true, + "values": [ + { + "name": "Active", + "value": "active", + "description": "The study is open for accrual." + }, + { + "name": "AdministrativelyCompleted", + "value": "administratively-completed", + "description": "Study is completed prematurely and will not resume; patients are no longer examined nor treated." + }, + { + "name": "Approved", + "value": "approved", + "description": "Protocol is approved by the review board." + }, + { + "name": "ClosedToAccrual", + "value": "closed-to-accrual", + "description": "Study is closed for accrual; patients can be examined and treated." + }, + { + "name": "ClosedToAccrualAndIntervention", + "value": "closed-to-accrual-and-intervention", + "description": "The study is closed to accrual and intervention, i.e. the study is closed to enrollment, all study subjects have completed treatment or intervention but are still being followed according to the primary objective of the study." + }, + { + "name": "Completed", + "value": "completed", + "description": "Study is closed to accrual and intervention, i.e. the study is closed to enrollment, all study subjects have completed treatment or intervention but are still being followed according to the primary objective of the study." + }, + { + "name": "Disapproved", + "value": "disapproved", + "description": "Protocol was disapproved by the review board." + }, + { + "name": "InReview", + "value": "in-review", + "description": "Protocol is submitted to the review board for approval." + }, + { + "name": "TemporarilyClosedToAccrual", + "value": "temporarily-closed-to-accrual", + "description": "The study is temporarily closed to accrual; a pause in accrual while study is reviewed, but is expected to resume." + }, + { + "name": "TemporarilyClosedToAccrualAndIntervention", + "value": "temporarily-closed-to-accrual-and-intervention", + "description": "Study is temporarily closed for accrual; can be potentially resumed in the future" + }, + { + "name": "Withdrawn", + "value": "withdrawn", + "description": "Protocol was withdrawn by the lead organization." + } + ] + } + }, + "Fhir.R4.Resource": { + "type": "object", + "description": "Resource is the ancestor of DomainResource from which most resources are derived. Bundle, Parameters, and Binary extend Resource directly.\nBased on [FHIR Resource](https://www.hl7.org/fhir/r4/resource.html", + "properties": { + "resourceType": { + "type": "string", + "description": "The type of resource" + }, + "id": { + "type": "string", + "description": "Resource Id" + }, + "meta": { + "$ref": "#/definitions/Fhir.R4.Meta", + "description": "Metadata about the resource" + }, + "implicitRules": { + "$ref": "#/definitions/Fhir.R4.fhirUri", + "description": "A set of rules under which this content was created" + }, + "language": { + "type": "string", + "description": "Language of the resource content" + } + }, + "required": [ + "resourceType" + ], + "additionalProperties": {} + }, + "Fhir.R4.SampledData": { + "type": "object", + "description": "A series of measurements taken by a device\nBased on [FHIR SampledData](https://www.hl7.org/fhir/R4/datatypes.html#SampledData)", + "properties": { + "origin": { + "$ref": "#/definitions/Fhir.R4.Quantity", + "description": "Zero value and units" + }, + "period": { + "type": "number", + "format": "double", + "description": "Number of milliseconds between samples" + }, + "factor": { + "type": "number", + "format": "double", + "description": "Multiply data by this before adding to origin" + }, + "lowerLimit": { + "type": "number", + "format": "double", + "description": "Lower limit of detection" + }, + "upperLimit": { + "type": "number", + "format": "double", + "description": "Upper limit of detection" + }, + "dimensions": { + "type": "integer", + "format": "int32", + "description": "Number of sample points at each time point", + "minimum": 1 + }, + "data": { + "type": "string", + "description": "Decimal values with spaces, or \"E\" | \"U\" | \"L\"" + } + }, + "required": [ + "origin", + "period", + "dimensions" + ], + "allOf": [ + { + "$ref": "#/definitions/Fhir.R4.Element" + } + ] + }, + "Fhir.R4.fhirDateTime": { + "type": "string", + "pattern": "([0-9]([0-9]([0-9][1-9]|[1-9]0)|[1-9]00)|[1-9]000)(-(0[1-9]|1[0-2])(-(0[1-9]|[1-2][0-9]|3[0-1])(T([01][0-9]|2[0-3]):[0-5][0-9]:([0-5][0-9]|60)(\\.[0-9]{1,9})?)?)?(Z|(\\+|-)((0[0-9]|1[0-3]):[0-5][0-9]|14:00)?)?)?" + }, + "Fhir.R4.fhirInstant": { + "type": "string", + "pattern": "([0-9]([0-9]([0-9][1-9]|[1-9]0)|[1-9]00)|[1-9]000)-(0[1-9]|1[0-2])-(0[1-9]|[1-2][0-9]|3[0-1])T([01][0-9]|2[0-3]):[0-5][0-9]:([0-5][0-9]|60)(\\.[0-9]{1,9})?(Z|(\\+|-)((0[0-9]|1[0-3]):[0-5][0-9]|14:00))" + }, + "Fhir.R4.fhirUri": { + "type": "string" + }, + "FindingInference": { + "type": "object", + "description": "Findings in a radiology report typically describe abnormalities, lesions, or other notable observations related to the anatomy or pathology of the imaged area.", + "properties": { + "finding": { + "$ref": "#/definitions/Fhir.R4.Observation", + "description": "Finding data : contains extensions, fields and components linked with the finding." + } + }, + "required": [ + "finding" + ], + "allOf": [ + { + "$ref": "#/definitions/RadiologyInsightsInference" + } + ], + "x-ms-discriminator-value": "finding" + }, + "FindingOptions": { + "type": "object", + "description": "Finding options.", + "properties": { + "provideFocusedSentenceEvidence": { + "type": "boolean", + "description": "If this is true, provide the sentence that contains the first token of the finding's clinical indicator (i.e. the medical problem), if there is one. This sentence is provided as an extension with url 'ci_sentence', next to the token evidence. Default is false." + } + } + }, + "FollowupCommunicationInference": { + "type": "object", + "description": "Follow-up communication involves the exchange of important information, recommendations, or updates between radiologists and other healthcare professionals involved in a patient's care.", + "properties": { + "dateTime": { + "type": "array", + "description": "Communication date and time.", + "items": { + "type": "string", + "format": "date-time" + } + }, + "recipient": { + "type": "array", + "description": "Recipient of the communication.", + "items": { + "$ref": "#/definitions/MedicalProfessionalType" + } + }, + "wasAcknowledged": { + "type": "boolean", + "description": "Communication was acknowledged." + } + }, + "required": [ + "wasAcknowledged" + ], + "allOf": [ + { + "$ref": "#/definitions/RadiologyInsightsInference" + } + ], + "x-ms-discriminator-value": "followupCommunication" + }, + "FollowupRecommendationInference": { + "type": "object", + "description": "Follow-up recommendations offer guidance to healthcare providers on managing and monitoring patients based on the findings of imaging studies.", + "properties": { + "effectiveDateTime": { + "$ref": "#/definitions/Fhir.R4.fhirDateTime", + "description": "Date and time are displayed when the procedure is recommended to be done at a specific point in time." + }, + "effectivePeriod": { + "$ref": "#/definitions/Fhir.R4.Period", + "description": "The period is shown if a specific period is mentioned, with a start and end date-time." + }, + "findings": { + "type": "array", + "description": "Findings related to the recommendation.", + "minItems": 1, + "items": { + "$ref": "#/definitions/RecommendationFinding" + }, + "x-ms-identifiers": [] + }, + "isConditional": { + "type": "boolean", + "description": "The conditional value indicates whether or not the sentence containing the recommendation includes a conditional statement. Keywords for conditional statements include 'if', 'when', 'unless', and so on." + }, + "isOption": { + "type": "boolean", + "description": "The option value indicates whether or not the sentence containing the recommendation includes an optional statement. Keywords for optional statements include 'recommend', 'consider', and so on." + }, + "isGuideline": { + "type": "boolean", + "description": "The guideline value indicates whether or not the recommendation is part of a guideline section that compiles all recommendations applicable to various findings." + }, + "isHedging": { + "type": "boolean", + "description": "Hedging refers to ambiguous, vague or imprecise language within the sentence of the recommendation. Keywords for hedging are 'can be','may be',and so on." + }, + "recommendedProcedure": { + "$ref": "#/definitions/ProcedureRecommendation", + "description": "The procedure recommendation can be a generic procedure or an imaging procedure." + } + }, + "required": [ + "isConditional", + "isOption", + "isGuideline", + "isHedging", + "recommendedProcedure" + ], + "allOf": [ + { + "$ref": "#/definitions/RadiologyInsightsInference" + } + ], + "x-ms-discriminator-value": "followupRecommendation" + }, + "FollowupRecommendationOptions": { + "type": "object", + "description": "Follow-up recommendation options.", + "properties": { + "includeRecommendationsWithNoSpecifiedModality": { + "type": "boolean", + "description": "Include/Exclude follow-up recommendations without a specific radiology procedure. Default is false." + }, + "includeRecommendationsInReferences": { + "type": "boolean", + "description": "Include/Exclude follow-up recommendations in references to a guideline or article. Default is false." + }, + "provideFocusedSentenceEvidence": { + "type": "boolean", + "description": "If this is true, provide one or more sentences as evidence for the recommendation, next to the token evidence. The start and end positions of these sentences will be put in an extension with url 'modality_sentences'. Default is false." + } + } + }, + "GenericProcedureRecommendation": { + "type": "object", + "description": "Generic procedure information.", + "properties": { + "code": { + "$ref": "#/definitions/Fhir.R4.CodeableConcept", + "description": "Procedure modality : SNOMED CT code." + }, + "description": { + "type": "string", + "description": "Procedure description : MANAGEMENT PROCEDURE (PROCEDURE) or CONSULTATION (PROCEDURE) based on SNOMED CT." + } + }, + "required": [ + "code" + ], + "allOf": [ + { + "$ref": "#/definitions/ProcedureRecommendation" + } + ], + "x-ms-discriminator-value": "genericProcedureRecommendation" + }, + "GeoJsonGeometryType": { + "type": "string", + "description": "`GeoJSON` geometry type.", + "enum": [ + "Point" + ], + "x-ms-enum": { + "name": "GeoJsonGeometryType", + "modelAsString": true, + "values": [ + { + "name": "Point", + "value": "Point" + } + ] + } + }, + "GeoJsonPropertiesSubType": { + "type": "string", + "description": "`GeoJSON` object sub-type.", + "enum": [ + "Circle" + ], + "x-ms-enum": { + "name": "GeoJsonPropertiesSubType", + "modelAsString": true, + "values": [ + { + "name": "Circle", + "value": "Circle" + } + ] + } + }, + "GeoJsonType": { + "type": "string", + "description": "`GeoJSON` type.", + "enum": [ + "Feature" + ], + "x-ms-enum": { + "name": "GeoJsonType", + "modelAsString": true, + "values": [ + { + "name": "Feature", + "value": "Feature" + } + ] + } + }, + "GeographicArea": { + "type": "object", + "description": "A geographic area, expressed as a `Circle` geometry represented using a `GeoJSON Feature` (see [GeoJSON spec](https://tools.ietf.org/html/rfc7946)).", + "properties": { + "type": { + "$ref": "#/definitions/GeoJsonType", + "description": "`GeoJSON` type." + }, + "geometry": { + "$ref": "#/definitions/AreaGeometry", + "description": "`GeoJSON` geometry, representing the area circle's center." + }, + "properties": { + "$ref": "#/definitions/AreaProperties", + "description": "`GeoJSON` object properties." + } + }, + "required": [ + "type", + "geometry", + "properties" + ] + }, + "GeographicLocation": { + "type": "object", + "description": "A location given as a combination of city, state and country/region. It could specify a city, a state or a country/region.\nIn case a city is specified, either state +country/region or country/region (for countries/regions where there are no states) should be added.\nIn case a state is specified (without a city), country/region should be added.", + "properties": { + "city": { + "type": "string", + "description": "City name." + }, + "state": { + "type": "string", + "description": "State name." + }, + "countryOrRegion": { + "type": "string", + "description": "Country/region name." + } + }, + "required": [ + "countryOrRegion" + ] + }, + "ImagingProcedure": { + "type": "object", + "description": "Imaging procedure.", + "properties": { + "modality": { + "$ref": "#/definitions/Fhir.R4.CodeableConcept", + "description": "Modality : SNOMED CT code." + }, + "anatomy": { + "$ref": "#/definitions/Fhir.R4.CodeableConcept", + "description": "Anatomy : SNOMED CT code." + }, + "laterality": { + "$ref": "#/definitions/Fhir.R4.CodeableConcept", + "description": "Laterality : SNOMED CT code." + }, + "contrast": { + "$ref": "#/definitions/RadiologyCodeWithTypes", + "description": "Contrast : see RadiologyCodeWithTypes (below)." + }, + "view": { + "$ref": "#/definitions/RadiologyCodeWithTypes", + "description": "View : see RadiologyCodeWithTypes (below)." + } + }, + "required": [ + "modality", + "anatomy" + ] + }, + "ImagingProcedureRecommendation": { + "type": "object", + "description": "Imaging procedures.", + "properties": { + "procedureCodes": { + "type": "array", + "description": "LOINC codes for the procedure.", + "items": { + "$ref": "#/definitions/Fhir.R4.CodeableConcept" + } + }, + "imagingProcedures": { + "type": "array", + "description": "Imaging procedures.", + "minItems": 1, + "items": { + "$ref": "#/definitions/ImagingProcedure" + }, + "x-ms-identifiers": [] + } + }, + "required": [ + "imagingProcedures" + ], + "allOf": [ + { + "$ref": "#/definitions/ProcedureRecommendation" + } + ], + "x-ms-discriminator-value": "imagingProcedureRecommendation" + }, + "InferenceEvidence": { + "type": "object", + "description": "A piece of evidence corresponding to an inference.", + "properties": { + "patientDataEvidence": { + "$ref": "#/definitions/ClinicalNoteEvidence", + "description": "A piece of evidence from a clinical note (text document)." + }, + "patientInfoEvidence": { + "$ref": "#/definitions/ClinicalCodedElement", + "description": "A piece of clinical information, expressed as a code in a clinical coding\nsystem." + }, + "importance": { + "type": "number", + "format": "float", + "description": "A value indicating how important this piece of evidence is for the inference.", + "minimum": 0, + "maximum": 1 + } + } + }, + "JobStatus": { + "type": "string", + "description": "The status of the processing job.", + "enum": [ + "notStarted", + "running", + "succeeded", + "failed", + "canceled" + ], + "x-ms-enum": { + "name": "JobStatus", + "modelAsString": true, + "values": [ + { + "name": "NotStarted", + "value": "notStarted" + }, + { + "name": "Running", + "value": "running" + }, + { + "name": "Succeeded", + "value": "succeeded" + }, + { + "name": "Failed", + "value": "failed" + }, + { + "name": "Canceled", + "value": "canceled" + } + ] + } + }, + "LateralityDiscrepancyInference": { + "type": "object", + "description": "A laterality mismatch occurs when there is a discrepancy between the clinical documentation and the ordered procedure (orderLateralityMismatch), a contradiction within the clinical document (textLateralityContradiction), or when no laterality is mentioned (textLateralityMissing).", + "properties": { + "lateralityIndication": { + "$ref": "#/definitions/Fhir.R4.CodeableConcept", + "description": "Laterality indication : SNOMED CT code for laterality qualifier value." + }, + "discrepancyType": { + "$ref": "#/definitions/LateralityDiscrepancyType", + "description": "Mismatch type : orderLateralityMismatch, textLateralityContradiction, textLateralityMissing." + } + }, + "required": [ + "discrepancyType" + ], + "allOf": [ + { + "$ref": "#/definitions/RadiologyInsightsInference" + } + ], + "x-ms-discriminator-value": "lateralityDiscrepancy" + }, + "LateralityDiscrepancyType": { + "type": "string", + "description": "Laterality discrepancy type", + "enum": [ + "orderLateralityMismatch", + "textLateralityContradiction", + "textLateralityMissing" + ], + "x-ms-enum": { + "name": "LateralityDiscrepancyType", + "modelAsString": true, + "values": [ + { + "name": "OrderLateralityMismatch", + "value": "orderLateralityMismatch", + "description": "Mismatch between order and text" + }, + { + "name": "TextLateralityContradiction", + "value": "textLateralityContradiction", + "description": "Contradiction in text" + }, + { + "name": "TextLateralityMissing", + "value": "textLateralityMissing", + "description": "Missing laterality in text" + } + ] + } + }, + "LimitedOrderDiscrepancyInference": { + "type": "object", + "description": "A limited order discrepancy occurs when there is a limited order, but all body parts and measurements that are needed for a complete order are present in the document.", + "properties": { + "orderType": { + "$ref": "#/definitions/Fhir.R4.CodeableConcept", + "description": "Order type : CPT ultrasound complete code for abdomen, retroperitoneal, pelvis or breast." + }, + "presentBodyParts": { + "type": "array", + "description": "List of body parts found in the document : SNOMED CT codes.", + "items": { + "$ref": "#/definitions/Fhir.R4.CodeableConcept" + } + }, + "presentBodyPartMeasurements": { + "type": "array", + "description": "List of body parts that are measured according to the document : SNOMED CT codes.", + "items": { + "$ref": "#/definitions/Fhir.R4.CodeableConcept" + } + } + }, + "required": [ + "orderType" + ], + "allOf": [ + { + "$ref": "#/definitions/RadiologyInsightsInference" + } + ], + "x-ms-discriminator-value": "limitedOrderDiscrepancy" + }, + "MedicalProfessionalType": { + "type": "string", + "description": "Medical Professional Type", + "enum": [ + "unknown", + "doctor", + "nurse", + "midwife", + "physicianAssistant" + ], + "x-ms-enum": { + "name": "MedicalProfessionalType", + "modelAsString": true, + "values": [ + { + "name": "Unknown", + "value": "unknown", + "description": "Unknown medical professional type" + }, + { + "name": "Doctor", + "value": "doctor", + "description": "Doctor medical professional type" + }, + { + "name": "Nurse", + "value": "nurse", + "description": "Nurse medical professional type" + }, + { + "name": "Midwife", + "value": "midwife", + "description": "Technician medical professional type" + }, + { + "name": "PhysicianAssistant", + "value": "physicianAssistant", + "description": "Technician medical professional type" + } + ] + } + }, + "ModelVersion": { + "type": "string", + "description": "The version of the model used for inference, expressed as the model date." + }, + "NeededClinicalInfo": { + "type": "array", + "description": "Clinical information which is needed to provide better trial matching results for the patient.", + "items": { + "$ref": "#/definitions/ExtendedClinicalCodedElement" + }, + "x-ms-identifiers": [] + }, + "OncoPhenotypeData": { + "type": "object", + "description": "The body of the Onco Phenotype request.", + "properties": { + "patients": { + "type": "array", + "description": "The list of patients, including their clinical information and data.", + "items": { + "$ref": "#/definitions/PatientRecord" + } + }, + "configuration": { + "$ref": "#/definitions/OncoPhenotypeModelConfiguration", + "description": "Configuration affecting the Onco Phenotype model's inference." + } + }, + "required": [ + "patients" + ] + }, + "OncoPhenotypeInference": { + "type": "object", + "description": "An inference made by the Onco Phenotype model regarding a patient.", + "properties": { + "type": { + "$ref": "#/definitions/OncoPhenotypeInferenceType", + "description": "The type of the Onco Phenotype inference" + }, + "value": { + "type": "string", + "description": "The value of the inference, as relevant for the given inference type." + }, + "description": { + "type": "string", + "description": "The description corresponding to the inference value." + }, + "confidenceScore": { + "type": "number", + "format": "float", + "description": "Confidence score for this inference.", + "minimum": 0, + "maximum": 1 + }, + "evidence": { + "type": "array", + "description": "The evidence corresponding to the inference value.", + "items": { + "$ref": "#/definitions/InferenceEvidence" + }, + "x-ms-identifiers": [] + }, + "caseId": { + "type": "string", + "description": "An identifier for a clinical case, if there are multiple clinical cases regarding the same patient." + } + }, + "required": [ + "type", + "value" + ] + }, + "OncoPhenotypeInferenceResult": { + "type": "object", + "description": "The inference results for the Onco Phenotype request.", + "properties": { + "patientResults": { + "type": "array", + "description": "Results for the patients given in the request.", + "items": { + "$ref": "#/definitions/OncoPhenotypePatientResult" + }, + "x-ms-identifiers": [] + }, + "modelVersion": { + "$ref": "#/definitions/ModelVersion", + "description": "The version of the model used for inference, expressed as the model date." + } + }, + "required": [ + "patientResults", + "modelVersion" + ] + }, + "OncoPhenotypeInferenceType": { + "type": "string", + "description": "The type of the Onco Phenotype inference.", + "enum": [ + "tumorSite", + "histology", + "clinicalStageT", + "clinicalStageN", + "clinicalStageM", + "pathologicStageT", + "pathologicStageN", + "pathologicStageM", + "diagnosisDate" + ], + "x-ms-enum": { + "name": "OncoPhenotypeInferenceType", + "modelAsString": true, + "values": [ + { + "name": "TumorSite", + "value": "tumorSite" + }, + { + "name": "Histology", + "value": "histology" + }, + { + "name": "ClinicalStageT", + "value": "clinicalStageT" + }, + { + "name": "ClinicalStageN", + "value": "clinicalStageN" + }, + { + "name": "ClinicalStageM", + "value": "clinicalStageM" + }, + { + "name": "PathologicStageT", + "value": "pathologicStageT" + }, + { + "name": "PathologicStageN", + "value": "pathologicStageN" + }, + { + "name": "PathologicStageM", + "value": "pathologicStageM" + }, + { + "name": "DiagnosisDate", + "value": "diagnosisDate" + } + ] + } + }, + "OncoPhenotypeModelConfiguration": { + "type": "object", + "description": "Configuration affecting the Onco Phenotype model's inference.", + "properties": { + "verbose": { + "type": "boolean", + "description": "An indication whether the model should produce verbose output.", + "default": false + }, + "includeEvidence": { + "type": "boolean", + "description": "An indication whether the model's output should include evidence for the inferences.", + "default": true + }, + "inferenceTypes": { + "type": "array", + "description": "A list of inference types to be inferred for the current request.\nThis could be used if only part of the Onco Phenotype inferences are required.\nIf this list is omitted or empty, the model will return all the inference types.", + "items": { + "$ref": "#/definitions/OncoPhenotypeInferenceType" + } + }, + "checkForCancerCase": { + "type": "boolean", + "description": "An indication whether to perform a preliminary step on the patient's documents to determine whether they relate to a Cancer case.", + "default": false + } + } + }, + "OncoPhenotypePatientResult": { + "type": "object", + "description": "The results of the model's work for a single patient.", + "properties": { + "patientId": { + "type": "string", + "description": "The identifier given for the patient in the request." + }, + "inferences": { + "type": "array", + "description": "The model's inferences for the given patient.", + "items": { + "$ref": "#/definitions/OncoPhenotypeInference" + }, + "x-ms-identifiers": [] + } + }, + "required": [ + "patientId", + "inferences" + ] + }, + "OncoPhenotypeResult": { + "type": "object", + "description": "The response for the Onco Phenotype request.", + "properties": { + "id": { + "$ref": "#/definitions/Azure.Core.uuid", + "description": "The unique ID of the operation.", + "readOnly": true + }, + "status": { + "$ref": "#/definitions/JobStatus", + "description": "The status of the operation", + "readOnly": true + }, + "createdDateTime": { + "type": "string", + "format": "date-time", + "description": "The date and time when the processing job was created.", + "readOnly": true + }, + "expirationDateTime": { + "type": "string", + "format": "date-time", + "description": "The date and time when the processing job is set to expire.", + "readOnly": true + }, + "lastUpdateDateTime": { + "type": "string", + "format": "date-time", + "description": "The date and time when the processing job was last updated.", + "readOnly": true + }, + "error": { + "$ref": "#/definitions/Azure.Core.Foundations.Error", + "description": "Error object that describes the error when status is \"Failed\"." + }, + "result": { + "$ref": "#/definitions/OncoPhenotypeInferenceResult", + "description": "The result of the operation." + } + }, + "required": [ + "id", + "status" + ] + }, + "OrderedProcedure": { + "type": "object", + "description": "Procedure information", + "properties": { + "extension": { + "type": "array", + "description": "Additional Content defined by implementations", + "items": { + "$ref": "#/definitions/Fhir.R4.Extension" + } + }, + "code": { + "$ref": "#/definitions/Fhir.R4.CodeableConcept", + "description": "Procedure code" + }, + "description": { + "type": "string", + "description": "Procedure description" + } + } + }, + "PatientDocument": { + "type": "object", + "description": "A clinical document related to a patient. Document here is in the wide sense - not just a text document (note).", + "properties": { + "type": { + "$ref": "#/definitions/DocumentType", + "description": "The type of the patient document, such as 'note' (text document) or 'fhirBundle' (FHIR JSON document)." + }, + "clinicalType": { + "$ref": "#/definitions/ClinicalDocumentType", + "description": "The type of the clinical document." + }, + "id": { + "type": "string", + "description": "A given identifier for the document. Has to be unique across all documents for a single patient.", + "minLength": 1 + }, + "language": { + "type": "string", + "description": "A 2 letter ISO 639-1 representation of the language of the document." + }, + "createdDateTime": { + "type": "string", + "format": "date-time", + "description": "The date and time when the document was created." + }, + "authors": { + "type": "array", + "description": "Document author(s)", + "items": { + "$ref": "#/definitions/DocumentAuthor" + } + }, + "specialtyType": { + "$ref": "#/definitions/SpecialtyType", + "description": "specialty type the document" + }, + "administrativeMetadata": { + "$ref": "#/definitions/DocumentAdministrativeMetadata", + "description": "Administrative metadata for the document." + }, + "content": { + "$ref": "#/definitions/DocumentContent", + "description": "The content of the patient document." + } + }, + "required": [ + "type", + "id", + "content" + ] + }, + "PatientInfo": { + "type": "object", + "description": "Patient structured information, including demographics and known structured clinical information.", + "properties": { + "sex": { + "$ref": "#/definitions/PatientInfoSex", + "description": "The patient's sex." + }, + "birthDate": { + "type": "string", + "format": "date", + "description": "The patient's date of birth." + }, + "clinicalInfo": { + "type": "array", + "description": "Known clinical information for the patient, structured.", + "items": { + "$ref": "#/definitions/Fhir.R4.Resource" + } + } + } + }, + "PatientInfoSex": { + "type": "string", + "description": "The patient's sex.", + "enum": [ + "female", + "male", + "unspecified" + ], + "x-ms-enum": { + "name": "PatientInfoSex", + "modelAsString": true, + "values": [ + { + "name": "Female", + "value": "female" + }, + { + "name": "Male", + "value": "male" + }, + { + "name": "Unspecified", + "value": "unspecified" + } + ] + } + }, + "PatientRecord": { + "type": "object", + "description": "A patient record, including their clinical information and data.", + "properties": { + "id": { + "type": "string", + "description": "A given identifier for the patient. Has to be unique across all patients in a single request.", + "minLength": 1 + }, + "info": { + "$ref": "#/definitions/PatientInfo", + "description": "Patient structured information, including demographics and known structured clinical information." + }, + "encounters": { + "type": "array", + "description": "Patient encounters/visits.", + "items": { + "$ref": "#/definitions/Encounter" + } + }, + "patientDocuments": { + "type": "array", + "description": "Patient unstructured clinical data, given as documents.", + "items": { + "$ref": "#/definitions/PatientDocument" + } + } + }, + "required": [ + "id" + ] + }, + "PatientTimelineData": { + "type": "object", + "description": "The body of the Patient Timeline request.", + "properties": { + "patients": { + "type": "array", + "description": "The list of patients, including their clinical information and data.", + "items": { + "$ref": "#/definitions/PatientRecord" + } + }, + "configuration": { + "$ref": "#/definitions/PatientTimelineModelConfiguration", + "description": "Configuration affecting the Patient Timeline model's inference." + } + }, + "required": [ + "patients" + ] + }, + "PatientTimelineInference": { + "type": "object", + "description": "An inference made by the Patient Timeline model regarding a patient.", + "properties": { + "extension": { + "type": "array", + "description": "Additional Content defined by implementations", + "items": { + "$ref": "#/definitions/Fhir.R4.Extension" + } + }, + "type": { + "$ref": "#/definitions/PatientTimelineInferenceType", + "description": "The type of the Patient Timeline inference." + }, + "resource": { + "$ref": "#/definitions/Fhir.R4.DomainResource", + "description": "FHIR 4.0 representation of the piece of clinical info.\nadditional dependent resources maybe contained (e.g. MedicationStatement may contain Medication)\n-- In the SDK we will have custom mapping to map this type to JsonObject" + }, + "period": { + "$ref": "#/definitions/TimePeriod", + "description": "Time range relevant to this Timeline inference." + } + }, + "required": [ + "type" + ] + }, + "PatientTimelineInferenceResult": { + "type": "object", + "description": "The inference results for the Patient Timeline request.", + "properties": { + "patientResults": { + "type": "array", + "description": "Results for the patients given in the request.", + "items": { + "$ref": "#/definitions/PatientTimelinePatientResult" + }, + "x-ms-identifiers": [] + }, + "modelVersion": { + "$ref": "#/definitions/ModelVersion", + "description": "The version of the model used for inference, expressed as the model date." + } + }, + "required": [ + "patientResults", + "modelVersion" + ] + }, + "PatientTimelineInferenceType": { + "type": "string", + "description": "The type of the Patient Timeline inference.", + "enum": [ + "timelineEvent", + "summaryItem" + ], + "x-ms-enum": { + "name": "PatientTimelineInferenceType", + "modelAsString": true, + "values": [ + { + "name": "TimelineEvent", + "value": "timelineEvent", + "description": "The inference is a timeline event." + }, + { + "name": "SummaryItem", + "value": "summaryItem", + "description": "The inference is a summary item." + } + ] + } + }, + "PatientTimelineModelConfiguration": { + "type": "object", + "description": "Configuration affecting the Patient Timeline model's inference.", + "properties": { + "verbose": { + "type": "boolean", + "description": "An indication whether the model should produce verbose output.", + "default": false + }, + "includeEvidence": { + "type": "boolean", + "description": "An indication whether the model's output should include evidence for the inferences.", + "default": true + } + } + }, + "PatientTimelinePatientResult": { + "type": "object", + "description": "The results of the model's work for a single patient.", + "properties": { + "patientId": { + "type": "string", + "description": "The identifier given for the patient in the request." + }, + "inferences": { + "type": "array", + "description": "The model's inferences for the given patient.", + "items": { + "$ref": "#/definitions/PatientTimelineInference" + }, + "x-ms-identifiers": [] + } + }, + "required": [ + "patientId", + "inferences" + ] + }, + "PatientTimelineResult": { + "type": "object", + "description": "The response for the Patient Timeline request.", + "properties": { + "id": { + "$ref": "#/definitions/Azure.Core.uuid", + "description": "The unique ID of the operation.", + "readOnly": true + }, + "status": { + "$ref": "#/definitions/JobStatus", + "description": "The status of the operation", + "readOnly": true + }, + "createdDateTime": { + "type": "string", + "format": "date-time", + "description": "The date and time when the processing job was created.", + "readOnly": true + }, + "expirationDateTime": { + "type": "string", + "format": "date-time", + "description": "The date and time when the processing job is set to expire.", + "readOnly": true + }, + "lastUpdateDateTime": { + "type": "string", + "format": "date-time", + "description": "The date and time when the processing job was last updated.", + "readOnly": true + }, + "error": { + "$ref": "#/definitions/Azure.Core.Foundations.Error", + "description": "Error object that describes the error when status is \"Failed\"." + }, + "result": { + "$ref": "#/definitions/PatientTimelineInferenceResult", + "description": "The result of the operation." + } + }, + "required": [ + "id", + "status" + ] + }, + "ProcedureRecommendation": { + "type": "object", + "description": "The procedure recommendation can be a generic procedure or an imaging procedure.", + "properties": { + "kind": { + "type": "string", + "description": "Discriminator property for ProcedureRecommendation." + } + }, + "discriminator": "kind", + "required": [ + "kind" + ] + }, + "RadiologyCodeWithTypes": { + "type": "object", + "description": "Radiology code with types : used in imaging procedure recommendation for contrast and view.", + "properties": { + "code": { + "$ref": "#/definitions/Fhir.R4.CodeableConcept", + "description": "The SNOMED CT code indicates whether imaging was conducted with or without contrast in the case of contrast, and in the case of views, it denotes the number of views." + }, + "types": { + "type": "array", + "description": "The collection of types will indicate the contrast substance used in the case of contrast and, in the case of views, it will specify the types of views, such as lateral and frontal, etc.", + "items": { + "$ref": "#/definitions/Fhir.R4.CodeableConcept" + } + } + }, + "required": [ + "code", + "types" + ] + }, + "RadiologyInsightsData": { + "type": "object", + "description": "Contains the list of patients, and configuration data.", + "properties": { + "patients": { + "type": "array", + "description": "The list of patients, including their clinical information and data.", + "items": { + "$ref": "#/definitions/PatientRecord" + } + }, + "configuration": { + "$ref": "#/definitions/RadiologyInsightsModelConfiguration", + "description": "Configuration affecting the Radiology Insights model's inference." + } + }, + "required": [ + "patients" + ] + }, + "RadiologyInsightsInference": { + "type": "object", + "description": "An inference made by the Radiology Insights model regarding a patient.\n - AgeMismatch\n - SexMismatch\n - LateralityDiscrepancy\n - CompleteOrderDiscrepancy\n - LimitedOrderDiscrepancy\n - Finding\n - CriticalResult\n - FollowupRecommendation\n - RadiologyProcedure\n - FollowupCommunication", + "properties": { + "kind": { + "type": "string", + "description": "Discriminator property for RadiologyInsightsInference." + }, + "extension": { + "type": "array", + "description": "Additional Content defined by implementations", + "items": { + "$ref": "#/definitions/Fhir.R4.Extension" + } + } + }, + "discriminator": "kind", + "required": [ + "kind" + ] + }, + "RadiologyInsightsInferenceOptions": { + "type": "object", + "description": "Options regarding follow up recommendation inferences and finding inferences.", + "properties": { + "followupRecommendationOptions": { + "$ref": "#/definitions/FollowupRecommendationOptions", + "description": "Follow-up recommendation options." + }, + "findingOptions": { + "$ref": "#/definitions/FindingOptions", + "description": "Finding options." + } + } + }, + "RadiologyInsightsInferenceResult": { + "type": "object", + "description": "The inference results for the Radiology Insights request. If field 'status' has value 'succeeded', then field 'result' will contain an instance of RadiologyInsightsInferenceResult.", + "properties": { + "patientResults": { + "type": "array", + "description": "Results for the patients given in the request.", + "items": { + "$ref": "#/definitions/RadiologyInsightsPatientResult" + }, + "x-ms-identifiers": [] + }, + "modelVersion": { + "$ref": "#/definitions/ModelVersion", + "description": "The version of the model used for inference, expressed as the model date." + } + }, + "required": [ + "patientResults", + "modelVersion" + ] + }, + "RadiologyInsightsInferenceType": { + "type": "string", + "description": "A Radiology Insights inference types.", + "enum": [ + "ageMismatch", + "lateralityDiscrepancy", + "sexMismatch", + "completeOrderDiscrepancy", + "limitedOrderDiscrepancy", + "finding", + "criticalResult", + "followupRecommendation", + "followupCommunication", + "radiologyProcedure" + ], + "x-ms-enum": { + "name": "RadiologyInsightsInferenceType", + "modelAsString": true, + "values": [ + { + "name": "AgeMismatch", + "value": "ageMismatch", + "description": "Age mismatch inference type" + }, + { + "name": "LateralityDiscrepancy", + "value": "lateralityDiscrepancy", + "description": "Laterality discrepancy inference type" + }, + { + "name": "SexMismatch", + "value": "sexMismatch", + "description": "Sex mismatch inference type" + }, + { + "name": "CompleteOrderDiscrepancy", + "value": "completeOrderDiscrepancy", + "description": "Complete order discrepancy inference type" + }, + { + "name": "LimitedOrderDiscrepancy", + "value": "limitedOrderDiscrepancy", + "description": "Limited order discrepancy inference type" + }, + { + "name": "Finding", + "value": "finding", + "description": "Finding inference type" + }, + { + "name": "CriticalResult", + "value": "criticalResult", + "description": "Critical finding inference type" + }, + { + "name": "FollowupRecommendation", + "value": "followupRecommendation", + "description": "Recommendation inference type" + }, + { + "name": "FollowupCommunication", + "value": "followupCommunication", + "description": "Followup Communication inference type" + }, + { + "name": "RadiologyProcedure", + "value": "radiologyProcedure", + "description": "Radiology Procedure inference type" + } + ] + } + }, + "RadiologyInsightsModelConfiguration": { + "type": "object", + "description": "Configuration affecting the Radiology Insights model's inference.", + "properties": { + "verbose": { + "type": "boolean", + "description": "An indication whether the model should produce verbose output.", + "default": false + }, + "includeEvidence": { + "type": "boolean", + "description": "An indication whether the model's output should include evidence for the inferences.", + "default": true + }, + "inferenceTypes": { + "type": "array", + "description": "This is a list of inference types to be inferred for the current request. It could be used if only part of the Radiology Insights inferences are required. If this list is omitted or empty, the model will return all the inference types.", + "items": { + "$ref": "#/definitions/RadiologyInsightsInferenceType" + } + }, + "inferenceOptions": { + "$ref": "#/definitions/RadiologyInsightsInferenceOptions", + "description": "Options regarding follow up recommendation inferences and finding inferences." + }, + "locale": { + "type": "string", + "description": "Local for the model to use. If not specified, the model will use the default locale." + } + } + }, + "RadiologyInsightsPatientResult": { + "type": "object", + "description": "Results of the model's work for a single patient.", + "properties": { + "patientId": { + "type": "string", + "description": "Identifier given for the patient in the request." + }, + "inferences": { + "type": "array", + "description": "The model's inferences for the given patient.", + "items": { + "$ref": "#/definitions/RadiologyInsightsInference" + }, + "x-ms-identifiers": [] + } + }, + "required": [ + "patientId", + "inferences" + ] + }, + "RadiologyInsightsResult": { + "type": "object", + "description": "Response for the Radiology Insights request.", + "properties": { + "id": { + "$ref": "#/definitions/Azure.Core.uuid", + "description": "The unique ID of the operation.", + "readOnly": true + }, + "status": { + "$ref": "#/definitions/JobStatus", + "description": "The status of the operation", + "readOnly": true + }, + "createdDateTime": { + "type": "string", + "format": "date-time", + "description": "The date and time when the processing job was created.", + "readOnly": true + }, + "expirationDateTime": { + "type": "string", + "format": "date-time", + "description": "The date and time when the processing job is set to expire.", + "readOnly": true + }, + "lastUpdateDateTime": { + "type": "string", + "format": "date-time", + "description": "The date and time when the processing job was last updated.", + "readOnly": true + }, + "error": { + "$ref": "#/definitions/Azure.Core.Foundations.Error", + "description": "Error object that describes the error when status is \"Failed\"." + }, + "result": { + "$ref": "#/definitions/RadiologyInsightsInferenceResult", + "description": "The result of the operation." + } + }, + "required": [ + "id", + "status" + ] + }, + "RadiologyProcedureInference": { + "type": "object", + "description": "Radiology procedures are the specific imaging studies or examinations ordered for the patient, extracted from the document information and text.", + "properties": { + "procedureCodes": { + "type": "array", + "description": "LOINC codes for the procedure.", + "items": { + "$ref": "#/definitions/Fhir.R4.CodeableConcept" + } + }, + "imagingProcedures": { + "type": "array", + "description": "Imaging procedures.", + "minItems": 1, + "items": { + "$ref": "#/definitions/ImagingProcedure" + }, + "x-ms-identifiers": [] + }, + "orderedProcedure": { + "$ref": "#/definitions/OrderedProcedure", + "description": "Ordered procedure information from the document information or text." + } + }, + "required": [ + "imagingProcedures", + "orderedProcedure" + ], + "allOf": [ + { + "$ref": "#/definitions/RadiologyInsightsInference" + } + ], + "x-ms-discriminator-value": "radiologyProcedure" + }, + "RecommendationFinding": { + "type": "object", + "description": "Finding reference for recommendation.", + "properties": { + "extension": { + "type": "array", + "description": "Additional Content defined by implementations", + "items": { + "$ref": "#/definitions/Fhir.R4.Extension" + } + }, + "finding": { + "$ref": "#/definitions/Fhir.R4.Observation", + "description": "Finding linked to a recommendation." + }, + "criticalFinding": { + "$ref": "#/definitions/CriticalResult", + "description": "Critical result linked to a recommendation." + }, + "recommendationFindingStatus": { + "$ref": "#/definitions/RecommendationFindingStatusType", + "description": "Recommendation finding status." + } + }, + "required": [ + "recommendationFindingStatus" + ] + }, + "RecommendationFindingStatusType": { + "type": "string", + "description": "Recommendation finding status", + "enum": [ + "present", + "differential", + "ruleOut", + "conditional" + ], + "x-ms-enum": { + "name": "RecommendationFindingStatusType", + "modelAsString": true, + "values": [ + { + "name": "Present", + "value": "present", + "description": "Present finding status" + }, + { + "name": "Differential", + "value": "differential", + "description": "Differential finding status" + }, + { + "name": "RuleOut", + "value": "ruleOut", + "description": "Rule out finding status" + }, + { + "name": "Conditional", + "value": "conditional", + "description": "Conditional finding status" + } + ] + } + }, + "SexMismatchInference": { + "type": "object", + "description": "A notification for a sex mismatch is displayed when the gender, personal pronouns, gender-related body parts, or gender-related procedures mentioned in a patient's clinical document are either inconsistent or do not match the gender specified in the patient information.", + "properties": { + "sexIndication": { + "$ref": "#/definitions/Fhir.R4.CodeableConcept", + "description": "Sex indication : SNOMED CT code for gender finding." + } + }, + "required": [ + "sexIndication" + ], + "allOf": [ + { + "$ref": "#/definitions/RadiologyInsightsInference" + } + ], + "x-ms-discriminator-value": "sexMismatch" + }, + "SpecialtyType": { + "type": "string", + "description": "Known values codes that can be used to indicate the type of the Specialty.", + "enum": [ + "pathology", + "radiology" + ], + "x-ms-enum": { + "name": "SpecialtyType", + "modelAsString": true, + "values": [ + { + "name": "Pathology", + "value": "pathology", + "description": "pathology" + }, + { + "name": "Radiology", + "value": "radiology", + "description": "radiology" + } + ] + } + }, + "TimePeriod": { + "type": "object", + "description": "A duration of time during which an event is happening", + "properties": { + "start": { + "type": "string", + "format": "date-time", + "description": "Starting time with inclusive boundary" + }, + "end": { + "type": "string", + "format": "date-time", + "description": "End time with inclusive boundary, if not ongoing" + } + } + }, + "TrialMatcherData": { + "type": "object", + "description": "The body of the Trial Matcher request.", + "properties": { + "patients": { + "type": "array", + "description": "The list of patients, including their clinical information and data.", + "items": { + "$ref": "#/definitions/PatientRecord" + } + }, + "configuration": { + "$ref": "#/definitions/TrialMatcherModelConfiguration", + "description": "Configuration affecting the Trial Matcher model's inference." + } + }, + "required": [ + "patients" + ] + }, + "TrialMatcherInference": { + "type": "object", + "description": "An inference made by the Trial Matcher model regarding a patient.", + "properties": { + "type": { + "$ref": "#/definitions/TrialMatcherInferenceType", + "description": "The type of the Trial Matcher inference." + }, + "value": { + "type": "string", + "description": "The value of the inference, as relevant for the given inference type." + }, + "description": { + "type": "string", + "description": "The description corresponding to the inference value." + }, + "confidenceScore": { + "type": "number", + "format": "float", + "description": "Confidence score for this inference.", + "minimum": 0, + "maximum": 1 + }, + "evidence": { + "type": "array", + "description": "The evidence corresponding to the inference value.", + "items": { + "$ref": "#/definitions/TrialMatcherInferenceEvidence" + }, + "x-ms-identifiers": [] + }, + "clinicalTrialId": { + "type": "string", + "description": "The identifier of the clinical trial.", + "minLength": 1 + }, + "source": { + "$ref": "#/definitions/ClinicalTrialSource", + "description": "Possible sources of a clinical trial." + }, + "metadata": { + "$ref": "#/definitions/ClinicalTrialMetadata", + "description": "Trial data which is of interest to the potential participant." + } + }, + "required": [ + "type", + "value" + ] + }, + "TrialMatcherInferenceEvidence": { + "type": "object", + "description": "A piece of evidence corresponding to a Trial Matcher inference.", + "properties": { + "eligibilityCriteriaEvidence": { + "type": "string", + "description": "A piece of evidence from the eligibility criteria text of a clinical trial." + }, + "patientDataEvidence": { + "$ref": "#/definitions/ClinicalNoteEvidence", + "description": "A piece of evidence from a clinical note (text document)." + }, + "patientInfoEvidence": { + "$ref": "#/definitions/ClinicalCodedElement", + "description": "A piece of clinical information, expressed as a code in a clinical coding\nsystem." + }, + "importance": { + "type": "number", + "format": "float", + "description": "A value indicating how important this piece of evidence is for the inference.", + "minimum": 0, + "maximum": 1 + } + } + }, + "TrialMatcherInferenceResult": { + "type": "object", + "description": "The inference results for the Trial Matcher request.", + "properties": { + "patientResults": { + "type": "array", + "description": "Results for the patients given in the request.", + "items": { + "$ref": "#/definitions/TrialMatcherPatientResult" + }, + "x-ms-identifiers": [] + }, + "modelVersion": { + "$ref": "#/definitions/ModelVersion", + "description": "The version of the model used for inference, expressed as the model date." + }, + "knowledgeGraphLastUpdateDate": { + "type": "string", + "format": "date", + "description": "The date when the clinical trials knowledge graph was last updated." + } + }, + "required": [ + "patientResults", + "modelVersion" + ] + }, + "TrialMatcherInferenceType": { + "type": "string", + "description": "The type of the Trial Matcher inference.", + "enum": [ + "trialEligibility" + ], + "x-ms-enum": { + "name": "TrialMatcherInferenceType", + "modelAsString": true, + "values": [ + { + "name": "TrialEligibility", + "value": "trialEligibility" + } + ] + } + }, + "TrialMatcherModelConfiguration": { + "type": "object", + "description": "Configuration affecting the Trial Matcher model's inference.", + "properties": { + "verbose": { + "type": "boolean", + "description": "An indication whether the model should produce verbose output.", + "default": false + }, + "includeEvidence": { + "type": "boolean", + "description": "An indication whether the model's output should include evidence for the inferences.", + "default": true + }, + "clinicalTrials": { + "$ref": "#/definitions/ClinicalTrials", + "description": "The clinical trials that the patient(s) should be matched to.
The trial\nselection can be given as a list of custom clinical trials and/or a list of\nfilters to known clinical trial registries. In case both are given, the\nresulting trial set is a union of the two sets." + } + }, + "required": [ + "clinicalTrials" + ] + }, + "TrialMatcherPatientResult": { + "type": "object", + "description": "The results of the model's work for a single patient.", + "properties": { + "patientId": { + "type": "string", + "description": "The identifier given for the patient in the request." + }, + "inferences": { + "type": "array", + "description": "The inference results for the patient.", + "items": { + "$ref": "#/definitions/TrialMatcherInference" + }, + "x-ms-identifiers": [] + }, + "neededClinicalInfo": { + "$ref": "#/definitions/NeededClinicalInfo", + "description": "Clinical information which is needed to provide better trial matching results for the patient." + } + }, + "required": [ + "patientId", + "inferences" + ] + }, + "TrialMatcherResult": { + "type": "object", + "description": "The response for the Trial Matcher request.", + "properties": { + "id": { + "$ref": "#/definitions/Azure.Core.uuid", + "description": "The unique ID of the operation.", + "readOnly": true + }, + "status": { + "$ref": "#/definitions/JobStatus", + "description": "The status of the operation", + "readOnly": true + }, + "createdDateTime": { + "type": "string", + "format": "date-time", + "description": "The date and time when the processing job was created.", + "readOnly": true + }, + "expirationDateTime": { + "type": "string", + "format": "date-time", + "description": "The date and time when the processing job is set to expire.", + "readOnly": true + }, + "lastUpdateDateTime": { + "type": "string", + "format": "date-time", + "description": "The date and time when the processing job was last updated.", + "readOnly": true + }, + "error": { + "$ref": "#/definitions/Azure.Core.Foundations.Error", + "description": "Error object that describes the error when status is \"Failed\"." + }, + "result": { + "$ref": "#/definitions/TrialMatcherInferenceResult", + "description": "The result of the operation." + } + }, + "required": [ + "id", + "status" + ] + } + }, + "parameters": { + "Azure.Core.Foundations.ApiVersionParameter": { + "name": "api-version", + "in": "query", + "description": "The API version to use for this operation.", + "required": true, + "type": "string", + "minLength": 1, + "x-ms-parameter-location": "method", + "x-ms-client-name": "apiVersion" + }, + "Azure.Core.RepeatabilityRequestHeaders.repeatabilityFirstSent": { + "name": "Repeatability-First-Sent", + "in": "header", + "description": "Specifies the date and time at which the request was first created.", + "required": false, + "type": "string", + "format": "date-time", + "x-ms-parameter-location": "method", + "x-ms-client-name": "repeatabilityFirstSent" + }, + "Azure.Core.RepeatabilityRequestHeaders.repeatabilityRequestId": { + "name": "Repeatability-Request-ID", + "in": "header", + "description": "An opaque, globally-unique, client-generated string identifier for the request.", + "required": false, + "type": "string", + "x-ms-parameter-location": "method", + "x-ms-client-name": "repeatabilityRequestId" + } + } +} diff --git a/specification/ai/data-plane/HealthInsights/readme.md b/specification/ai/data-plane/HealthInsights/readme.md index 9e8e2f518b94..4d885f884815 100644 --- a/specification/ai/data-plane/HealthInsights/readme.md +++ b/specification/ai/data-plane/HealthInsights/readme.md @@ -4,10 +4,10 @@ Configuration for generating Health Insights SDK. -The current release is `2023-03-01-preview`. +The current release is `2023-09-01-preview`. ```yaml -tag: 2023-03-01-preview +tag: 2023-09-01-preview add-credentials: true openapi-type: data-plane ``` @@ -22,4 +22,20 @@ These settings apply only when `--tag=2023-03-01-preview` is specified on the co ```yaml $(tag) == '2023-03-01-preview' input-file: - preview/2023-03-01-preview/openapi.json +``` + +### Release 2023-09-01-preview + + +These settings apply only when `--tag=2023-09-01-preview` is specified on the command line. + +```yaml $(tag) == '2023-09-01-preview' +input-file: + - preview/2023-09-01-preview/openapi.json +``` + +```yaml +directive: + - suppress: AvoidAnonymousTypes + reason: The spec is auto-generated. Tracking issue to fix is https://github.com/Azure/typespec-azure-pr/issues/3349 ``` \ No newline at end of file