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environment.yml
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name: ec3D_env
channels:
- plotly
- anaconda
- conda-forge
- bioconda
- defaults
dependencies:
- _libgcc_mutex=0.1=conda_forge
- _openmp_mutex=4.5=2_gnu
- asciitree=0.3.3=py_2
- autograd=1.6.2=pyhd8ed1ab_0
- aws-c-auth=0.7.31=h57bd9a3_0
- aws-c-cal=0.7.4=hfd43aa1_1
- aws-c-common=0.9.28=hb9d3cd8_0
- aws-c-compression=0.2.19=h756ea98_1
- aws-c-event-stream=0.4.3=h29ce20c_2
- aws-c-http=0.8.10=h5e77a74_0
- aws-c-io=0.14.18=h2af50b2_12
- aws-c-mqtt=0.10.7=h02abb05_0
- aws-c-s3=0.6.6=h834ce55_0
- aws-c-sdkutils=0.1.19=h756ea98_3
- aws-checksums=0.1.20=h756ea98_0
- aws-crt-cpp=0.28.3=h3e6eb3e_6
- aws-sdk-cpp=1.11.407=h9f1560d_0
- azure-core-cpp=1.14.0=h5cfcd09_0
- azure-identity-cpp=1.10.0=h113e628_0
- azure-storage-blobs-cpp=12.13.0=h3cf044e_1
- azure-storage-common-cpp=12.8.0=h736e048_1
- azure-storage-files-datalake-cpp=12.12.0=ha633028_1
- biopython=1.83=py38h01eb140_0
- blas=1.1=openblas
- bokeh=3.1.1=pyhd8ed1ab_0
- brotli=1.1.0=hd590300_1
- brotli-bin=1.1.0=hd590300_1
- brotli-python=1.1.0=py38h17151c0_1
- bzip2=1.0.8=h4bc722e_7
- c-ares=1.32.3=h4bc722e_0
- ca-certificates=2024.8.30=hbcca054_0
- cached-property=1.5.2=hd8ed1ab_1
- cached_property=1.5.2=pyha770c72_1
- certifi=2024.8.30=pyhd8ed1ab_0
- cffi=1.17.0=py38heb5c249_0
- charset-normalizer=3.4.0=pyhd8ed1ab_0
- click=8.1.7=unix_pyh707e725_0
- cloudpickle=3.1.0=pyhd8ed1ab_1
- contourpy=1.1.1=py38h7f3f72f_1
- cooler=0.10.2=pyhdfd78af_0
- cycler=0.12.1=pyhd8ed1ab_0
- cytoolz=0.12.3=py38h01eb140_0
- dask=2023.5.0=pyhd8ed1ab_0
- dask-core=2023.5.0=pyhd8ed1ab_0
- dill=0.3.9=pyhd8ed1ab_0
- distributed=2023.5.0=pyhd8ed1ab_0
- fonttools=4.53.1=py38h2019614_0
- freetype=2.12.1=h267a509_2
- fsspec=2024.9.0=pyhff2d567_0
- future=1.0.0=pyhd8ed1ab_0
- gflags=2.2.2=h5888daf_1005
- glog=0.7.1=hbabe93e_0
- h2=4.1.0=pyhd8ed1ab_0
- h5py=3.11.0=nompi_py38h55b5aab_102
- hdf5=1.14.3=nompi_hdf9ad27_105
- hpack=4.0.0=pyh9f0ad1d_0
- htslib=1.21=h5efdd21_0
- hyperframe=6.0.1=pyhd8ed1ab_0
- iced=0.5.10=py38h8c35140_2
- icu=75.1=he02047a_0
- idna=3.10=pyhd8ed1ab_0
- importlib-metadata=8.5.0=pyha770c72_0
- importlib-resources=6.4.5=pyhd8ed1ab_0
- importlib_metadata=8.5.0=hd8ed1ab_0
- importlib_resources=6.4.5=pyhd8ed1ab_0
- jinja2=3.1.4=pyhd8ed1ab_0
- joblib=1.4.2=pyhd8ed1ab_0
- keyutils=1.6.1=h166bdaf_0
- kiwisolver=1.4.5=py38h7f3f72f_1
- krb5=1.21.3=h659f571_0
- lcms2=2.16=hb7c19ff_0
- ld_impl_linux-64=2.43=h712a8e2_1
- lerc=4.0.0=h27087fc_0
- libabseil=20240722.0=cxx17_h5888daf_1
- libaec=1.1.3=h59595ed_0
- libarrow=17.0.0=ha07344c_22_cpu
- libarrow-acero=17.0.0=h5888daf_22_cpu
- libarrow-dataset=17.0.0=h5888daf_22_cpu
- libarrow-substrait=17.0.0=he882d9a_22_cpu
- libblas=3.9.0=24_linux64_openblas
- libbrotlicommon=1.1.0=hd590300_1
- libbrotlidec=1.1.0=hd590300_1
- libbrotlienc=1.1.0=hd590300_1
- libcblas=3.9.0=24_linux64_openblas
- libcrc32c=1.1.2=h9c3ff4c_0
- libcurl=8.10.1=hbbe4b11_0
- libdeflate=1.21=h4bc722e_0
- libedit=3.1.20191231=he28a2e2_2
- libev=4.33=hd590300_2
- libevent=2.1.12=hf998b51_1
- libffi=3.4.2=h7f98852_5
- libgcc=14.2.0=h77fa898_1
- libgcc-ng=14.2.0=h69a702a_1
- libgfortran=14.2.0=h69a702a_1
- libgfortran-ng=14.2.0=h69a702a_1
- libgfortran5=14.2.0=hd5240d6_1
- libgomp=14.2.0=h77fa898_1
- libgoogle-cloud=2.30.0=h438788a_0
- libgoogle-cloud-storage=2.30.0=h0121fbd_0
- libgrpc=1.65.5=hf5c653b_0
- libiconv=1.17=hd590300_2
- libjpeg-turbo=3.0.0=hd590300_1
- liblapack=3.9.0=24_linux64_openblas
- libnghttp2=1.58.0=h47da74e_1
- libnsl=2.0.1=hd590300_0
- libopenblas=0.3.27=pthreads_hac2b453_1
- libparquet=17.0.0=h6bd9018_22_cpu
- libpng=1.6.44=hadc24fc_0
- libprotobuf=5.27.5=h5b01275_2
- libre2-11=2024.07.02=hbbce691_1
- libsqlite=3.46.1=hadc24fc_0
- libssh2=1.11.0=h0841786_0
- libstdcxx=14.2.0=hc0a3c3a_1
- libstdcxx-ng=14.2.0=h4852527_1
- libthrift=0.21.0=h0e7cc3e_0
- libtiff=4.7.0=h6565414_0
- libutf8proc=2.8.0=h166bdaf_0
- libuuid=2.38.1=h0b41bf4_0
- libwebp-base=1.4.0=hd590300_0
- libxcb=1.17.0=h8a09558_0
- libxcrypt=4.4.36=hd590300_1
- libxml2=2.12.7=he7c6b58_4
- libzlib=1.3.1=hb9d3cd8_2
- locket=1.0.0=pyhd8ed1ab_0
- lz4=4.3.3=py38hdcd8cb4_0
- lz4-c=1.9.4=hcb278e6_0
- markupsafe=2.1.5=py38h01eb140_0
- matplotlib-base=3.7.3=py38h58ed7fa_0
- msgpack-python=1.0.8=py38hea7755e_0
- multiprocess=0.70.16=py38h01eb140_0
- munkres=1.1.4=pyh9f0ad1d_0
- ncurses=6.5=he02047a_1
- networkx=3.1=py38h06a4308_0
- numpy=1.24.4=py38h59b608b_0
- openblas=0.3.27=pthreads_h9eca1d5_1
- openjpeg=2.5.2=h488ebb8_0
- openssl=3.3.2=hb9d3cd8_0
- orc=2.0.2=h690cf93_1
- packaging=24.1=pyhd8ed1ab_0
- pairix=0.3.8=py38h6bfa29d_3
- pandas=2.0.3=py38h01efb38_1
- partd=1.4.1=pyhd8ed1ab_0
- patsy=0.5.6=pyhd8ed1ab_0
- perl=5.32.1=7_hd590300_perl5
- pillow=10.4.0=py38h2bc05a7_0
- pip=24.2=pyh8b19718_1
- platformdirs=4.3.6=pyhd8ed1ab_0
- plotly=5.24.1=py_0
- pooch=1.8.2=pyhd8ed1ab_0
- psutil=6.0.0=py38hfb59056_0
- pthread-stubs=0.4=hb9d3cd8_1002
- pyarrow=17.0.0=py38hb563948_1
- pyarrow-core=17.0.0=py38h7debecc_1_cpu
- pycparser=2.22=pyhd8ed1ab_0
- pyfaidx=0.8.1.3=pyhdfd78af_0
- pyparsing=3.1.4=pyhd8ed1ab_0
- pysam=0.22.1=py38h2d19e03_2
- pysocks=1.7.1=pyha2e5f31_6
- python=3.8.20=h4a871b0_2_cpython
- python-dateutil=2.9.0=pyhd8ed1ab_0
- python-louvain=0.16=pyhd8ed1ab_0
- python-tzdata=2024.2=pyhd8ed1ab_0
- python_abi=3.8=5_cp38
- pytz=2024.2=pyhd8ed1ab_0
- pyvcf3=1.0.3=pyhdfd78af_0
- pyyaml=6.0.2=py38h2019614_0
- re2=2024.07.02=h77b4e00_1
- readline=8.2=h8228510_1
- requests=2.32.3=pyhd8ed1ab_0
- s2n=1.5.5=h3931f03_0
- samtools=1.21=h50ea8bc_0
- scikit-learn=1.3.2=py38ha25d942_2
- scipy=1.10.1=py38h32ae08f_1
- setuptools=75.1.0=pyhd8ed1ab_0
- simplejson=3.19.3=py38h2019614_0
- six=1.16.0=pyh6c4a22f_0
- snappy=1.2.1=ha2e4443_0
- sortedcontainers=2.4.0=pyhd8ed1ab_0
- statsmodels=0.14.0=py38ha9d4c09_0
- tblib=3.0.0=pyhd8ed1ab_0
- tenacity=9.0.0=pyhd8ed1ab_0
- threadpoolctl=3.5.0=pyhc1e730c_0
- tk=8.6.13=noxft_h4845f30_101
- toolz=1.0.0=pyhd8ed1ab_0
- tornado=6.4.1=py38hfb59056_0
- tzdata=2024b=hc8b5060_0
- unicodedata2=15.1.0=py38h01eb140_0
- urllib3=2.2.3=pyhd8ed1ab_0
- wheel=0.44.0=pyhd8ed1ab_0
- xorg-libxau=1.0.11=hb9d3cd8_1
- xorg-libxdmcp=1.1.5=hb9d3cd8_0
- xyzservices=2024.9.0=pyhd8ed1ab_0
- xz=5.2.6=h166bdaf_0
- yaml=0.2.5=h7f98852_2
- zict=3.0.0=pyhd8ed1ab_0
- zipp=3.20.2=pyhd8ed1ab_0
- zstandard=0.23.0=py38h62bed22_0
- zstd=1.5.6=ha6fb4c9_0