Release notes

v3.0 - Feb 7, 2024

change path to precurated output from the sorting_precurated to curated folder
pin to aind-data-schema==0.19.1
update to spikeinterface==0.100.0
accept behavior_* as session name
add `ArgumentParser`` to be able to pass discrete command line arguments
extended available CLI arguments to control removal of out/bad channels, max fraction of bad channels, n_jobs, parameter file
some renaming:
- preprocessing_strategy -> denoising_strategy
- max_bad_channel_fraction_to_remove - > max_bad_channel_fraction
better error handling

v2.3 - Jan 31, 2024

better handling of spike sorting failures

v2.2 - Dec 11, 2023

fix creation of DerivedDataDescription from scratch

v2.1 - Dec 7, 2023

fix visualization of drift map for short recordings using peak pipeline

v2.0 - Nov 17, 2023

update to spikeinterface==0.99.1
update to aind-data-schema==0.17.1
update to wavpack-numcodecs==0.1.5
add min_processing_duration (default 120), to skip processing for short (test) recordings
added amplitude_median, amplitude_cv, firing_range, synchrony_metrics, nearest-neighbor
include multi_channel template metrics (velocity_above, velocity_below, spread, exp_decay)
change default correlograms params: 1ms bin, 50ms window
add protection against recordings without channel locations
dump preprocessed recording JSON to preprocessed/ to easily reload processed object
use UpgradeProcessing to upgrade old processing schema models
Add nearest neighbor (and fix parameters) and silhouette metrics

v1.9 - Oct 20, 2023

Update to aind-data-schema==0.15.12
Update to spikeinterface==0.98.2
Use new Processing schema

v1.8 - Sep 25, 2023

Update data description name from 'Spike Sorting' to 'sorted'

v1.7 - Jul 27, 2023

Upgrade to wavpack-numcodecs==0.1.4

v1.6 - Jul 18, 2023

Use aind-data-schema.DataDescriptionUpgrade
Update to spikeinterface==0.98.1

v1.5 - Apr 26, 2023

Fix bug in drift map path

v1.4 - Apr 12, 2023

updates `Processing`` construction

v1.3 - Mar 29, 2023

Fix bug in detect_peaks

v1.2 - Mar 28, 2023

Fix matplotlib.Normalize for drift plot

v1.1 - Mar 24, 2023

clean up verbosity
install fonts for sortingview

v1.0 - Mar 14, 2023

first release, spikeinterface==0.97.1