diff --git a/requirements/linux/all-requirements.txt b/requirements/linux/all-requirements.txt index 49e065f2d..a6870a01d 100644 --- a/requirements/linux/all-requirements.txt +++ b/requirements/linux/all-requirements.txt @@ -12,7 +12,7 @@ alembic==1.13.1 anndata==0.9.2 annotated-types==0.6.0 antlr4-python3-runtime==4.9.3 -anyio==4.2.0 +anyio==4.3.0 arrow==1.3.0 asciitree==0.3.3 astropy==5.2.2 @@ -30,7 +30,7 @@ botocore==1.27.59 certifi==2024.2.2 charset-normalizer==3.3.2 click==8.1.7 -cliff==4.5.0 +cliff==4.6.0 cloudpickle==3.0.0 cmaes==0.10.0 cmake==3.28.3 @@ -47,9 +47,9 @@ Deprecated==1.2.14 distributed==2023.5.0 docker==7.0.0 e3nn==0.5.1 -edt==2.3.2 +edt==2.4.0 einops==0.7.0 -elementpath==4.2.1 +elementpath==4.3.0 entrypoints==0.4 escnn==1.0.11 exceptiongroup==1.2.0 @@ -58,13 +58,13 @@ fasteners==0.19 filelock==3.13.1 fire==0.5.0 Flask==3.0.2 -fonttools==4.48.1 +fonttools==4.49.0 frozenlist==1.4.1 fsspec==2023.3.0 -future==0.18.3 +future==1.0.0 geomloss==0.2.6 gitdb==4.0.11 -gitpython==3.1.41 +gitpython==3.1.42 gorilla==0.4.0 greenlet==3.0.3 gunicorn==21.2.0 @@ -97,10 +97,10 @@ Mako==1.3.2 markdown==3.5.2 markdown-it-py==3.0.0 MarkupSafe==2.1.5 -matplotlib==3.7.4 +matplotlib==3.7.5 mdurl==0.1.2 mlflow==2.10.2 -monai-weekly==1.4.dev2406 +monai-weekly==1.4.dev2407 mpmath==1.3.0 msgpack==1.0.7 multidict==6.0.5 @@ -121,7 +121,7 @@ nvidia-cusolver-cu11==11.4.0.1 nvidia-cusparse-cu11==11.7.4.91 nvidia-nccl-cu11==2.14.3 nvidia-nvtx-cu11==11.7.91 -ome-types==0.4.5 +ome-types==0.5.0 ome-zarr==0.8.3 omegaconf==2.3.0 opt-einsum==3.3.0 @@ -136,8 +136,8 @@ pbr==6.0.0 pillow==10.2.0 platformdirs==4.2.0 point-cloud-utils==0.30.4 -pooch==1.8.0 -PrettyTable==3.9.0 +pooch==1.8.1 +PrettyTable==3.10.0 protobuf==3.20.1 psutil==5.9.8 py3nj==0.1.2 @@ -153,7 +153,7 @@ pyntcloud==0.3.1 pyparsing==3.1.1 pyperclip==1.8.2 pyrootutils==1.0.4 -pyshtools==4.11.10 +pyshtools==4.10.3 python-dateutil==2.8.2 python-dotenv==1.0.1 python-editor==1.0.4 @@ -185,17 +185,17 @@ sqlalchemy==2.0.27 sqlparse==0.4.4 starlette==0.36.3 starsessions==1.3.0 -stevedore==5.1.0 +stevedore==5.2.0 sympy==1.12 tblib==3.0.0 termcolor==2.4.0 threadpoolctl==3.3.0 tifffile==2023.7.10 -timm==0.9.12 +timm==0.9.16 toolz==0.12.1 torch==2.0.1 -torch-geometric==2.4.0 -torchio==0.19.5 +torch-geometric==2.5.0 +torchio==0.19.6 torchmetrics==1.3.1 torchserve==0.9.0 torchvision==0.15.2 @@ -206,7 +206,7 @@ triton==2.0.0 typer==0.9.0 types-python-dateutil==2.8.19.20240106 typing-extensions==4.9.0 -universal-pathlib==0.2.0 +universal-pathlib==0.2.1 urllib3==1.26.18 uvicorn==0.27.1 vtk==9.3.0 @@ -217,8 +217,8 @@ Werkzeug==3.0.1 wheel==0.42.0 wrapt==1.16.0 xarray==2023.1.0 -xmlschema==3.0.1 -xsdata==24.1 +xmlschema==3.0.2 +xsdata==24.2.1 yarl==1.9.4 zarr==2.16.1 zict==3.0.0 diff --git a/requirements/linux/docs-requirements.txt b/requirements/linux/docs-requirements.txt index a3ee0781d..c7c5af676 100644 --- a/requirements/linux/docs-requirements.txt +++ b/requirements/linux/docs-requirements.txt @@ -13,7 +13,7 @@ alembic==1.13.1 anndata==0.9.2 annotated-types==0.6.0 antlr4-python3-runtime==4.9.3 -anyio==4.2.0 +anyio==4.3.0 arrow==1.3.0 asciitree==0.3.3 astropy==5.2.2 @@ -32,7 +32,7 @@ botocore==1.27.59 certifi==2024.2.2 charset-normalizer==3.3.2 click==8.1.7 -cliff==4.5.0 +cliff==4.6.0 cloudpickle==3.0.0 cmaes==0.10.0 cmake==3.28.3 @@ -50,9 +50,9 @@ distributed==2023.5.0 docker==7.0.0 docutils==0.19 e3nn==0.5.1 -edt==2.3.2 +edt==2.4.0 einops==0.7.0 -elementpath==4.2.1 +elementpath==4.3.0 entrypoints==0.4 escnn==1.0.11 exceptiongroup==1.2.0 @@ -61,14 +61,14 @@ fasteners==0.19 filelock==3.13.1 fire==0.5.0 Flask==3.0.2 -fonttools==4.48.1 +fonttools==4.49.0 frozenlist==1.4.1 fsspec==2023.3.0 furo==2023.3.23 -future==0.18.3 +future==1.0.0 geomloss==0.2.6 gitdb==4.0.11 -gitpython==3.1.41 +gitpython==3.1.42 gorilla==0.4.0 greenlet==3.0.3 gunicorn==21.2.0 @@ -103,11 +103,11 @@ Mako==1.3.2 markdown==3.5.2 markdown-it-py==3.0.0 MarkupSafe==2.1.5 -matplotlib==3.7.4 +matplotlib==3.7.5 mdurl==0.1.2 mistune==0.8.4 mlflow==2.10.2 -monai-weekly==1.4.dev2406 +monai-weekly==1.4.dev2407 mpmath==1.3.0 msgpack==1.0.7 multidict==6.0.5 @@ -128,7 +128,7 @@ nvidia-cusolver-cu11==11.4.0.1 nvidia-cusparse-cu11==11.7.4.91 nvidia-nccl-cu11==2.14.3 nvidia-nvtx-cu11==11.7.91 -ome-types==0.4.5 +ome-types==0.5.0 ome-zarr==0.8.3 omegaconf==2.3.0 opt-einsum==3.3.0 @@ -143,8 +143,8 @@ pbr==6.0.0 pillow==10.2.0 platformdirs==4.2.0 point-cloud-utils==0.30.4 -pooch==1.8.0 -PrettyTable==3.9.0 +pooch==1.8.1 +PrettyTable==3.10.0 protobuf==3.20.1 psutil==5.9.8 py3nj==0.1.2 @@ -160,7 +160,7 @@ pyntcloud==0.3.1 pyparsing==3.1.1 pyperclip==1.8.2 pyrootutils==1.0.4 -pyshtools==4.11.10 +pyshtools==4.10.3 python-dateutil==2.8.2 python-dotenv==1.0.1 python-editor==1.0.4 @@ -201,17 +201,17 @@ sqlalchemy==2.0.27 sqlparse==0.4.4 starlette==0.36.3 starsessions==1.3.0 -stevedore==5.1.0 +stevedore==5.2.0 sympy==1.12 tblib==3.0.0 termcolor==2.4.0 threadpoolctl==3.3.0 tifffile==2023.7.10 -timm==0.9.12 +timm==0.9.16 toolz==0.12.1 torch==2.0.1 -torch-geometric==2.4.0 -torchio==0.19.5 +torch-geometric==2.5.0 +torchio==0.19.6 torchmetrics==1.3.1 torchserve==0.9.0 torchvision==0.15.2 @@ -222,7 +222,7 @@ triton==2.0.0 typer==0.9.0 types-python-dateutil==2.8.19.20240106 typing-extensions==4.9.0 -universal-pathlib==0.2.0 +universal-pathlib==0.2.1 urllib3==1.26.18 uvicorn==0.27.1 vtk==9.3.0 @@ -233,8 +233,8 @@ Werkzeug==3.0.1 wheel==0.42.0 wrapt==1.16.0 xarray==2023.1.0 -xmlschema==3.0.1 -xsdata==24.1 +xmlschema==3.0.2 +xsdata==24.2.1 yarl==1.9.4 zarr==2.16.1 zict==3.0.0 diff --git a/requirements/linux/equiv-requirements.txt b/requirements/linux/equiv-requirements.txt index 6ee4e2a1b..cc34fa989 100644 --- a/requirements/linux/equiv-requirements.txt +++ b/requirements/linux/equiv-requirements.txt @@ -10,7 +10,7 @@ alembic==1.13.1 anndata==0.9.2 annotated-types==0.6.0 antlr4-python3-runtime==4.9.3 -anyio==4.2.0 +anyio==4.3.0 arrow==1.3.0 asciitree==0.3.3 astropy==5.2.2 @@ -28,7 +28,7 @@ botocore==1.27.59 certifi==2024.2.2 charset-normalizer==3.3.2 click==8.1.7 -cliff==4.5.0 +cliff==4.6.0 cloudpickle==3.0.0 cmaes==0.10.0 cmake==3.28.3 @@ -43,9 +43,9 @@ deepdiff==6.7.1 distributed==2023.5.0 docker==7.0.0 e3nn==0.5.1 -edt==2.3.2 +edt==2.4.0 einops==0.7.0 -elementpath==4.2.1 +elementpath==4.3.0 entrypoints==0.4 escnn==1.0.11 exceptiongroup==1.2.0 @@ -54,12 +54,12 @@ fasteners==0.19 filelock==3.13.1 fire==0.5.0 Flask==3.0.2 -fonttools==4.48.1 +fonttools==4.49.0 frozenlist==1.4.1 fsspec==2023.3.0 -future==0.18.3 +future==1.0.0 gitdb==4.0.11 -gitpython==3.1.41 +gitpython==3.1.42 greenlet==3.0.3 gunicorn==21.2.0 h11==0.14.0 @@ -90,10 +90,10 @@ Mako==1.3.2 markdown==3.5.2 markdown-it-py==3.0.0 MarkupSafe==2.1.5 -matplotlib==3.7.4 +matplotlib==3.7.5 mdurl==0.1.2 mlflow==2.10.2 -monai-weekly==1.4.dev2406 +monai-weekly==1.4.dev2407 mpmath==1.3.0 msgpack==1.0.7 multidict==6.0.5 @@ -112,7 +112,7 @@ nvidia-cusolver-cu11==11.4.0.1 nvidia-cusparse-cu11==11.7.4.91 nvidia-nccl-cu11==2.14.3 nvidia-nvtx-cu11==11.7.91 -ome-types==0.4.5 +ome-types==0.5.0 ome-zarr==0.8.3 omegaconf==2.3.0 opt-einsum==3.3.0 @@ -125,7 +125,7 @@ pandas==1.5.3 partd==1.4.1 pbr==6.0.0 pillow==10.2.0 -PrettyTable==3.9.0 +PrettyTable==3.10.0 protobuf==3.20.1 psutil==5.9.8 py3nj==0.1.2 @@ -169,13 +169,13 @@ sqlalchemy==2.0.27 sqlparse==0.4.4 starlette==0.36.3 starsessions==1.3.0 -stevedore==5.1.0 +stevedore==5.2.0 sympy==1.12 tblib==3.0.0 termcolor==2.4.0 threadpoolctl==3.3.0 tifffile==2023.7.10 -timm==0.9.12 +timm==0.9.16 toolz==0.12.1 torch==2.0.1 torchmetrics==1.3.1 @@ -186,7 +186,7 @@ traitlets==5.14.1 triton==2.0.0 types-python-dateutil==2.8.19.20240106 typing-extensions==4.9.0 -universal-pathlib==0.2.0 +universal-pathlib==0.2.1 urllib3==1.26.18 uvicorn==0.27.1 wcwidth==0.2.13 @@ -196,8 +196,8 @@ Werkzeug==3.0.1 wheel==0.42.0 wrapt==1.16.0 xarray==2023.1.0 -xmlschema==3.0.1 -xsdata==24.1 +xmlschema==3.0.2 +xsdata==24.2.1 yarl==1.9.4 zarr==2.16.1 zict==3.0.0 diff --git a/requirements/linux/pdm.lock b/requirements/linux/pdm.lock index 6d35722a4..ed1a67892 100644 --- a/requirements/linux/pdm.lock +++ b/requirements/linux/pdm.lock @@ -6,7 +6,7 @@ groups = ["default", "all", "docs", "equiv", "pcloud", "s3", "spharm", "test", " cross_platform = false static_urls = false lock_version = "4.3" -content_hash = "sha256:c392677f3db2f3745ea6275db9235c2d1c74568ca72edc636c8237f1a30a717e" +content_hash = "sha256:c90aefee5ab3fe56c13f803b43b106b586bad6483a7acd815767b87e85b7330c" [[package]] name = "aicscytoparam" @@ -190,7 +190,7 @@ files = [ [[package]] name = "anyio" -version = "4.2.0" +version = "4.3.0" requires_python = ">=3.8" summary = "High level compatibility layer for multiple asynchronous event loop implementations" dependencies = [ @@ -200,8 +200,8 @@ dependencies = [ "typing-extensions>=4.1; python_version < \"3.11\"", ] files = [ - {file = "anyio-4.2.0-py3-none-any.whl", hash = "sha256:745843b39e829e108e518c489b31dc757de7d2131d53fac32bd8df268227bfee"}, - {file = "anyio-4.2.0.tar.gz", hash = "sha256:e1875bb4b4e2de1669f4bc7869b6d3f54231cdced71605e6e64c9be77e3be50f"}, + {file = "anyio-4.3.0-py3-none-any.whl", hash = "sha256:048e05d0f6caeed70d731f3db756d35dcc1f35747c8c403364a8332c630441b8"}, + {file = "anyio-4.3.0.tar.gz", hash = "sha256:f75253795a87df48568485fd18cdd2a3fa5c4f7c5be8e5e36637733fce06fed6"}, ] [[package]] @@ -422,7 +422,7 @@ files = [ [[package]] name = "cliff" -version = "4.5.0" +version = "4.6.0" requires_python = ">=3.8" summary = "Command Line Interface Formulation Framework" dependencies = [ @@ -433,8 +433,8 @@ dependencies = [ "stevedore>=2.0.1", ] files = [ - {file = "cliff-4.5.0-py3-none-any.whl", hash = "sha256:0cb50f41e13fb90d32e5a66969966427cbbef98ef397cef4eb78bfad52ef747c"}, - {file = "cliff-4.5.0.tar.gz", hash = "sha256:61beeac238530beb3ae19eefb421b8b290b97dcc9efee01fc32fe62fb75a31d9"}, + {file = "cliff-4.6.0-py3-none-any.whl", hash = "sha256:58a90e87738b9a7df672a5f9627bcd668564d01d8e567170dfe2d3a0026adb31"}, + {file = "cliff-4.6.0.tar.gz", hash = "sha256:2f38ce8bd1ea4958d66f15b066ac47e65d61f600b9319b921e12e9e9cbcd99d0"}, ] [[package]] @@ -520,27 +520,27 @@ files = [ [[package]] name = "coverage" -version = "7.4.1" +version = "7.4.2" requires_python = ">=3.8" summary = "Code coverage measurement for Python" files = [ - {file = "coverage-7.4.1-cp310-cp310-manylinux_2_5_x86_64.manylinux1_x86_64.manylinux_2_17_x86_64.manylinux2014_x86_64.whl", hash = "sha256:6dceb61d40cbfcf45f51e59933c784a50846dc03211054bd76b421a713dcdf19"}, - {file = "coverage-7.4.1.tar.gz", hash = "sha256:1ed4b95480952b1a26d863e546fa5094564aa0065e1e5f0d4d0041f293251d04"}, + {file = "coverage-7.4.2-cp310-cp310-manylinux_2_5_x86_64.manylinux1_x86_64.manylinux_2_17_x86_64.manylinux2014_x86_64.whl", hash = "sha256:78cdcbf7b9cb83fe047ee09298e25b1cd1636824067166dc97ad0543b079d22f"}, + {file = "coverage-7.4.2.tar.gz", hash = "sha256:1a5ee18e3a8d766075ce9314ed1cb695414bae67df6a4b0805f5137d93d6f1cb"}, ] [[package]] name = "coverage" -version = "7.4.1" +version = "7.4.2" extras = ["toml"] requires_python = ">=3.8" summary = "Code coverage measurement for Python" dependencies = [ - "coverage==7.4.1", + "coverage==7.4.2", "tomli; python_full_version <= \"3.11.0a6\"", ] files = [ - {file = "coverage-7.4.1-cp310-cp310-manylinux_2_5_x86_64.manylinux1_x86_64.manylinux_2_17_x86_64.manylinux2014_x86_64.whl", hash = "sha256:6dceb61d40cbfcf45f51e59933c784a50846dc03211054bd76b421a713dcdf19"}, - {file = "coverage-7.4.1.tar.gz", hash = "sha256:1ed4b95480952b1a26d863e546fa5094564aa0065e1e5f0d4d0041f293251d04"}, + {file = "coverage-7.4.2-cp310-cp310-manylinux_2_5_x86_64.manylinux1_x86_64.manylinux_2_17_x86_64.manylinux2014_x86_64.whl", hash = "sha256:78cdcbf7b9cb83fe047ee09298e25b1cd1636824067166dc97ad0543b079d22f"}, + {file = "coverage-7.4.2.tar.gz", hash = "sha256:1a5ee18e3a8d766075ce9314ed1cb695414bae67df6a4b0805f5137d93d6f1cb"}, ] [[package]] @@ -710,15 +710,15 @@ files = [ [[package]] name = "edt" -version = "2.3.2" +version = "2.4.0" requires_python = ">=3.7,<4" summary = "Multi-Label Anisotropic Euclidean Distance Transform 3D" dependencies = [ "numpy", ] files = [ - {file = "edt-2.3.2-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.whl", hash = "sha256:004944995b6cd5c8153171ccefde92a7ace0df097035c4bc319a1fd6ebd014a9"}, - {file = "edt-2.3.2.tar.gz", hash = "sha256:c975c5b2591e149dfc84350c508e37792ad75fc52746d4eb1b91e21f3a4f4a1f"}, + {file = "edt-2.4.0-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.whl", hash = "sha256:6520905e85e639eb7a0a37e650b9f137483fd9dae111ff2143a0fb7091365aae"}, + {file = "edt-2.4.0.tar.gz", hash = "sha256:1c0bd88ab81a22cf01d0b53d6a0b584e56301a14658318a9b41bd636fc5e03cf"}, ] [[package]] @@ -733,12 +733,12 @@ files = [ [[package]] name = "elementpath" -version = "4.2.1" +version = "4.3.0" requires_python = ">=3.8" summary = "XPath 1.0/2.0/3.0/3.1 parsers and selectors for ElementTree and lxml" files = [ - {file = "elementpath-4.2.1-py3-none-any.whl", hash = "sha256:bbb05220460fc5ac6c3687a0f70870a80e457c61d1c547e1430bac931aa2fe0a"}, - {file = "elementpath-4.2.1.tar.gz", hash = "sha256:2afd3839732b60854946928f413d6ae869d0a2071c6fcfd5d2cf8937688e0b24"}, + {file = "elementpath-4.3.0-py3-none-any.whl", hash = "sha256:ecc885f2bb5bd5322fd68ace071f134a8fabf05f0019d77c638b906b844f6593"}, + {file = "elementpath-4.3.0.tar.gz", hash = "sha256:8d25db9150f5a6aa978c9f58e607fcd5ab6e6e3017140563439a9884ab1eb304"}, ] [[package]] @@ -847,13 +847,13 @@ files = [ [[package]] name = "fonttools" -version = "4.48.1" +version = "4.49.0" requires_python = ">=3.8" summary = "Tools to manipulate font files" files = [ - {file = "fonttools-4.48.1-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.whl", hash = "sha256:e740a7602c2bb71e1091269b5dbe89549749a8817dc294b34628ffd8b2bf7124"}, - {file = "fonttools-4.48.1-py3-none-any.whl", hash = "sha256:e3e33862fc5261d46d9aae3544acb36203b1a337d00bdb5d3753aae50dac860e"}, - {file = "fonttools-4.48.1.tar.gz", hash = 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-3168,28 +3172,28 @@ files = [ [[package]] name = "xmlschema" -version = "3.0.1" +version = "3.0.2" requires_python = ">=3.8" summary = "An XML Schema validator and decoder" dependencies = [ - "elementpath<5.0.0,>=4.1.5", + "elementpath<5.0.0,>=4.3.0", ] files = [ - {file = "xmlschema-3.0.1-py3-none-any.whl", hash = "sha256:116243b2ad38cd2df9ee0606d4e4e898a6f156736b39ab0017e6f49862c0809e"}, - {file = "xmlschema-3.0.1.tar.gz", hash = "sha256:bb24a5f4738e49d85d9eb03a2b5af26bbbbfdb055517ad953d98925094b8c026"}, + {file = "xmlschema-3.0.2-py3-none-any.whl", hash = "sha256:c8935f81e1645df3e71136805c7206871268aa8c6e31e3667ea23746f22fea0a"}, + {file = "xmlschema-3.0.2.tar.gz", hash = "sha256:b2526e91695905aa62d4aa2b68349565a168fedf88ada0005f5e0dd21da9734b"}, ] [[package]] name = "xsdata" -version = "24.1" +version = "24.2.1" requires_python = ">=3.8" summary = "Python XML Binding" dependencies = [ "typing-extensions", ] files = [ - {file = "xsdata-24.1-py3-none-any.whl", hash = "sha256:314eba1e50219e3393fa3814f51b426646ae0bb9a416ecc5b6d93bcb08e88416"}, - {file = "xsdata-24.1.tar.gz", hash = "sha256:e36fc8b4624bbbaf2d34d0857c6d78ede99ec1d3240cc7dd50546177fbb52442"}, + {file = "xsdata-24.2.1-py3-none-any.whl", hash = "sha256:b5fa19482a059a58dd0f6a237d7a1dee742f7acc5267b51faa7a4d1830603e41"}, + {file = "xsdata-24.2.1.tar.gz", hash = "sha256:4630515935eb23a43942c4c2c4596e6ee11fab6223850380155b4f29d65d67c1"}, ] [[package]] diff --git a/requirements/linux/requirements.txt b/requirements/linux/requirements.txt index aeb5e675f..9218875ab 100644 --- a/requirements/linux/requirements.txt +++ b/requirements/linux/requirements.txt @@ -8,7 +8,7 @@ alembic==1.13.1 anndata==0.9.2 annotated-types==0.6.0 antlr4-python3-runtime==4.9.3 -anyio==4.2.0 +anyio==4.3.0 arrow==1.3.0 asciitree==0.3.3 astropy==5.2.2 @@ -20,12 +20,12 @@ beautifulsoup4==4.12.3 bfio==2.3.0 blessed==1.20.0 blinker==1.7.0 -boto3==1.34.42 -botocore==1.34.42 +boto3==1.34.48 +botocore==1.34.48 certifi==2024.2.2 charset-normalizer==3.3.2 click==8.1.7 -cliff==4.5.0 +cliff==4.6.0 cloudpickle==3.0.0 cmaes==0.10.0 cmake==3.28.3 @@ -39,9 +39,9 @@ dateutils==0.6.12 deepdiff==6.7.1 distributed==2023.5.0 docker==7.0.0 -edt==2.3.2 +edt==2.4.0 einops==0.7.0 -elementpath==4.2.1 +elementpath==4.3.0 entrypoints==0.4 exceptiongroup==1.2.0 fastapi==0.109.2 @@ -49,11 +49,11 @@ fasteners==0.19 filelock==3.13.1 fire==0.5.0 Flask==3.0.2 -fonttools==4.48.1 +fonttools==4.49.0 frozenlist==1.4.1 fsspec==2024.2.0 gitdb==4.0.11 -gitpython==3.1.41 +gitpython==3.1.42 greenlet==3.0.3 gunicorn==21.2.0 h11==0.14.0 @@ -83,10 +83,10 @@ Mako==1.3.2 markdown==3.5.2 markdown-it-py==3.0.0 MarkupSafe==2.1.5 -matplotlib==3.7.4 +matplotlib==3.7.5 mdurl==0.1.2 mlflow==2.10.2 -monai-weekly==1.4.dev2406 +monai-weekly==1.4.dev2407 mpmath==1.3.0 msgpack==1.0.7 multidict==6.0.5 @@ -105,7 +105,7 @@ nvidia-cusolver-cu11==11.4.0.1 nvidia-cusparse-cu11==11.7.4.91 nvidia-nccl-cu11==2.14.3 nvidia-nvtx-cu11==11.7.91 -ome-types==0.4.5 +ome-types==0.5.0 ome-zarr==0.8.3 omegaconf==2.3.0 optuna==2.10.1 @@ -116,7 +116,7 @@ pandas==1.5.3 partd==1.4.1 pbr==6.0.0 pillow==10.2.0 -PrettyTable==3.9.0 +PrettyTable==3.10.0 protobuf==3.20.1 psutil==5.9.8 pyarrow==10.0.1 @@ -158,13 +158,13 @@ sqlalchemy==2.0.27 sqlparse==0.4.4 starlette==0.36.3 starsessions==1.3.0 -stevedore==5.1.0 +stevedore==5.2.0 sympy==1.12 tblib==3.0.0 termcolor==2.4.0 threadpoolctl==3.3.0 tifffile==2023.7.10 -timm==0.9.12 +timm==0.9.16 toolz==0.12.1 torch==2.0.1 torchmetrics==1.3.1 @@ -175,7 +175,7 @@ traitlets==5.14.1 triton==2.0.0 types-python-dateutil==2.8.19.20240106 typing-extensions==4.9.0 -universal-pathlib==0.2.0 +universal-pathlib==0.2.1 urllib3==2.0.7 uvicorn==0.27.1 wcwidth==0.2.13 @@ -185,8 +185,8 @@ Werkzeug==3.0.1 wheel==0.42.0 wrapt==1.16.0 xarray==2023.1.0 -xmlschema==3.0.1 -xsdata==24.1 +xmlschema==3.0.2 +xsdata==24.2.1 yarl==1.9.4 zarr==2.16.1 zict==3.0.0 diff --git a/requirements/linux/spharm-requirements.txt b/requirements/linux/spharm-requirements.txt index 54b782033..fdc99ba9d 100644 --- a/requirements/linux/spharm-requirements.txt +++ b/requirements/linux/spharm-requirements.txt @@ -12,7 +12,7 @@ alembic==1.13.1 anndata==0.9.2 annotated-types==0.6.0 antlr4-python3-runtime==4.9.3 -anyio==4.2.0 +anyio==4.3.0 arrow==1.3.0 asciitree==0.3.3 astropy==5.2.2 @@ -29,7 +29,7 @@ botocore==1.27.59 certifi==2024.2.2 charset-normalizer==3.3.2 click==8.1.7 -cliff==4.5.0 +cliff==4.6.0 cloudpickle==3.0.0 cmaes==0.10.0 cmake==3.28.3 @@ -43,9 +43,9 @@ dateutils==0.6.12 deepdiff==6.7.1 distributed==2023.5.0 docker==7.0.0 -edt==2.3.2 +edt==2.4.0 einops==0.7.0 -elementpath==4.2.1 +elementpath==4.3.0 entrypoints==0.4 exceptiongroup==1.2.0 fastapi==0.109.2 @@ -53,11 +53,11 @@ fasteners==0.19 filelock==3.13.1 fire==0.5.0 Flask==3.0.2 -fonttools==4.48.1 +fonttools==4.49.0 frozenlist==1.4.1 fsspec==2023.3.0 gitdb==4.0.11 -gitpython==3.1.41 +gitpython==3.1.42 greenlet==3.0.3 gunicorn==21.2.0 h11==0.14.0 @@ -87,10 +87,10 @@ Mako==1.3.2 markdown==3.5.2 markdown-it-py==3.0.0 MarkupSafe==2.1.5 -matplotlib==3.7.4 +matplotlib==3.7.5 mdurl==0.1.2 mlflow==2.10.2 -monai-weekly==1.4.dev2406 +monai-weekly==1.4.dev2407 mpmath==1.3.0 msgpack==1.0.7 multidict==6.0.5 @@ -109,7 +109,7 @@ nvidia-cusolver-cu11==11.4.0.1 nvidia-cusparse-cu11==11.7.4.91 nvidia-nccl-cu11==2.14.3 nvidia-nvtx-cu11==11.7.91 -ome-types==0.4.5 +ome-types==0.5.0 ome-zarr==0.8.3 omegaconf==2.3.0 optuna==2.10.1 @@ -121,8 +121,8 @@ partd==1.4.1 pbr==6.0.0 pillow==10.2.0 platformdirs==4.2.0 -pooch==1.8.0 -PrettyTable==3.9.0 +pooch==1.8.1 +PrettyTable==3.10.0 protobuf==3.20.1 psutil==5.9.8 pyarrow==10.0.1 @@ -135,7 +135,7 @@ pyjwt==2.8.0 pyparsing==3.1.1 pyperclip==1.8.2 pyrootutils==1.0.4 -pyshtools==4.11.10 +pyshtools==4.10.3 python-dateutil==2.8.2 python-dotenv==1.0.1 python-editor==1.0.4 @@ -165,13 +165,13 @@ sqlalchemy==2.0.27 sqlparse==0.4.4 starlette==0.36.3 starsessions==1.3.0 -stevedore==5.1.0 +stevedore==5.2.0 sympy==1.12 tblib==3.0.0 termcolor==2.4.0 threadpoolctl==3.3.0 tifffile==2023.7.10 -timm==0.9.12 +timm==0.9.16 toolz==0.12.1 torch==2.0.1 torchmetrics==1.3.1 @@ -182,7 +182,7 @@ traitlets==5.14.1 triton==2.0.0 types-python-dateutil==2.8.19.20240106 typing-extensions==4.9.0 -universal-pathlib==0.2.0 +universal-pathlib==0.2.1 urllib3==1.26.18 uvicorn==0.27.1 vtk==9.3.0 @@ -193,8 +193,8 @@ Werkzeug==3.0.1 wheel==0.42.0 wrapt==1.16.0 xarray==2023.1.0 -xmlschema==3.0.1 -xsdata==24.1 +xmlschema==3.0.2 +xsdata==24.2.1 yarl==1.9.4 zarr==2.16.1 zict==3.0.0 diff --git a/requirements/linux/test-requirements.txt b/requirements/linux/test-requirements.txt index 60501184b..ebb05e2c1 100644 --- a/requirements/linux/test-requirements.txt +++ b/requirements/linux/test-requirements.txt @@ -12,7 +12,7 @@ alembic==1.13.1 anndata==0.9.2 annotated-types==0.6.0 antlr4-python3-runtime==4.9.3 -anyio==4.2.0 +anyio==4.3.0 arrow==1.3.0 asciitree==0.3.3 astropy==5.2.2 @@ -30,7 +30,7 @@ botocore==1.27.59 certifi==2024.2.2 charset-normalizer==3.3.2 click==8.1.7 -cliff==4.5.0 +cliff==4.6.0 cloudpickle==3.0.0 cmaes==0.10.0 cmake==3.28.3 @@ -38,7 +38,7 @@ cmd2==2.4.3 colorama==0.4.6 colorlog==6.8.2 contourpy==1.1.1 -coverage==7.4.1 +coverage==7.4.2 croniter==1.4.1 cycler==0.12.1 dask==2023.5.0 @@ -48,9 +48,9 @@ Deprecated==1.2.14 distributed==2023.5.0 docker==7.0.0 e3nn==0.5.1 -edt==2.3.2 +edt==2.4.0 einops==0.7.0 -elementpath==4.2.1 +elementpath==4.3.0 entrypoints==0.4 escnn==1.0.11 exceptiongroup==1.2.0 @@ -59,13 +59,13 @@ fasteners==0.19 filelock==3.13.1 fire==0.5.0 Flask==3.0.2 -fonttools==4.48.1 +fonttools==4.49.0 frozenlist==1.4.1 fsspec==2023.3.0 -future==0.18.3 +future==1.0.0 geomloss==0.2.6 gitdb==4.0.11 -gitpython==3.1.41 +gitpython==3.1.42 gorilla==0.4.0 greenlet==3.0.3 gunicorn==21.2.0 @@ -99,10 +99,10 @@ Mako==1.3.2 markdown==3.5.2 markdown-it-py==3.0.0 MarkupSafe==2.1.5 -matplotlib==3.7.4 +matplotlib==3.7.5 mdurl==0.1.2 mlflow==2.10.2 -monai-weekly==1.4.dev2406 +monai-weekly==1.4.dev2407 mpmath==1.3.0 msgpack==1.0.7 multidict==6.0.5 @@ -123,7 +123,7 @@ nvidia-cusolver-cu11==11.4.0.1 nvidia-cusparse-cu11==11.7.4.91 nvidia-nccl-cu11==2.14.3 nvidia-nvtx-cu11==11.7.91 -ome-types==0.4.5 +ome-types==0.5.0 ome-zarr==0.8.3 omegaconf==2.3.0 opt-einsum==3.3.0 @@ -139,8 +139,8 @@ pillow==10.2.0 platformdirs==4.2.0 pluggy==1.4.0 point-cloud-utils==0.30.4 -pooch==1.8.0 -PrettyTable==3.9.0 +pooch==1.8.1 +PrettyTable==3.10.0 protobuf==3.20.1 psutil==5.9.8 py3nj==0.1.2 @@ -156,7 +156,7 @@ pyntcloud==0.3.1 pyparsing==3.1.1 pyperclip==1.8.2 pyrootutils==1.0.4 -pyshtools==4.11.10 +pyshtools==4.10.3 pytest==7.4.4 pytest-cov==4.1.0 python-dateutil==2.8.2 @@ -190,18 +190,18 @@ sqlalchemy==2.0.27 sqlparse==0.4.4 starlette==0.36.3 starsessions==1.3.0 -stevedore==5.1.0 +stevedore==5.2.0 sympy==1.12 tblib==3.0.0 termcolor==2.4.0 threadpoolctl==3.3.0 tifffile==2023.7.10 -timm==0.9.12 +timm==0.9.16 tomli==2.0.1 toolz==0.12.1 torch==2.0.1 -torch-geometric==2.4.0 -torchio==0.19.5 +torch-geometric==2.5.0 +torchio==0.19.6 torchmetrics==1.3.1 torchserve==0.9.0 torchvision==0.15.2 @@ -212,7 +212,7 @@ triton==2.0.0 typer==0.9.0 types-python-dateutil==2.8.19.20240106 typing-extensions==4.9.0 -universal-pathlib==0.2.0 +universal-pathlib==0.2.1 urllib3==1.26.18 uvicorn==0.27.1 vtk==9.3.0 @@ -223,8 +223,8 @@ Werkzeug==3.0.1 wheel==0.42.0 wrapt==1.16.0 xarray==2023.1.0 -xmlschema==3.0.1 -xsdata==24.1 +xmlschema==3.0.2 +xsdata==24.2.1 yarl==1.9.4 zarr==2.16.1 zict==3.0.0 diff --git a/requirements/linux/torchserve-requirements.txt b/requirements/linux/torchserve-requirements.txt index 3c3877ed3..ef6d09b97 100644 --- a/requirements/linux/torchserve-requirements.txt +++ b/requirements/linux/torchserve-requirements.txt @@ -10,7 +10,7 @@ alembic==1.13.1 anndata==0.9.2 annotated-types==0.6.0 antlr4-python3-runtime==4.9.3 -anyio==4.2.0 +anyio==4.3.0 arrow==1.3.0 asciitree==0.3.3 astropy==5.2.2 @@ -27,7 +27,7 @@ botocore==1.27.59 certifi==2024.2.2 charset-normalizer==3.3.2 click==8.1.7 -cliff==4.5.0 +cliff==4.6.0 cloudpickle==3.0.0 cmaes==0.10.0 cmake==3.28.3 @@ -41,9 +41,9 @@ dateutils==0.6.12 deepdiff==6.7.1 distributed==2023.5.0 docker==7.0.0 -edt==2.3.2 +edt==2.4.0 einops==0.7.0 -elementpath==4.2.1 +elementpath==4.3.0 entrypoints==0.4 exceptiongroup==1.2.0 fastapi==0.109.2 @@ -51,11 +51,11 @@ fasteners==0.19 filelock==3.13.1 fire==0.5.0 Flask==3.0.2 -fonttools==4.48.1 +fonttools==4.49.0 frozenlist==1.4.1 fsspec==2023.3.0 gitdb==4.0.11 -gitpython==3.1.41 +gitpython==3.1.42 gorilla==0.4.0 greenlet==3.0.3 gunicorn==21.2.0 @@ -86,10 +86,10 @@ Mako==1.3.2 markdown==3.5.2 markdown-it-py==3.0.0 MarkupSafe==2.1.5 -matplotlib==3.7.4 +matplotlib==3.7.5 mdurl==0.1.2 mlflow==2.10.2 -monai-weekly==1.4.dev2406 +monai-weekly==1.4.dev2407 mpmath==1.3.0 msgpack==1.0.7 multidict==6.0.5 @@ -108,7 +108,7 @@ nvidia-cusolver-cu11==11.4.0.1 nvidia-cusparse-cu11==11.7.4.91 nvidia-nccl-cu11==2.14.3 nvidia-nvtx-cu11==11.7.91 -ome-types==0.4.5 +ome-types==0.5.0 ome-zarr==0.8.3 omegaconf==2.3.0 optuna==2.10.1 @@ -119,7 +119,7 @@ pandas==1.5.3 partd==1.4.1 pbr==6.0.0 pillow==10.2.0 -PrettyTable==3.9.0 +PrettyTable==3.10.0 protobuf==3.20.1 psutil==5.9.8 pyarrow==10.0.1 @@ -161,13 +161,13 @@ sqlalchemy==2.0.27 sqlparse==0.4.4 starlette==0.36.3 starsessions==1.3.0 -stevedore==5.1.0 +stevedore==5.2.0 sympy==1.12 tblib==3.0.0 termcolor==2.4.0 threadpoolctl==3.3.0 tifffile==2023.7.10 -timm==0.9.12 +timm==0.9.16 toolz==0.12.1 torch==2.0.1 torchmetrics==1.3.1 @@ -179,7 +179,7 @@ traitlets==5.14.1 triton==2.0.0 types-python-dateutil==2.8.19.20240106 typing-extensions==4.9.0 -universal-pathlib==0.2.0 +universal-pathlib==0.2.1 urllib3==1.26.18 uvicorn==0.27.1 wcwidth==0.2.13 @@ -189,8 +189,8 @@ Werkzeug==3.0.1 wheel==0.42.0 wrapt==1.16.0 xarray==2023.1.0 -xmlschema==3.0.1 -xsdata==24.1 +xmlschema==3.0.2 +xsdata==24.2.1 yarl==1.9.4 zarr==2.16.1 zict==3.0.0 diff --git a/requirements/macos/all-requirements.txt b/requirements/macos/all-requirements.txt index 9334147f1..e2bcb38e0 100644 --- a/requirements/macos/all-requirements.txt +++ b/requirements/macos/all-requirements.txt @@ -12,7 +12,7 @@ alembic==1.13.1 anndata==0.9.2 annotated-types==0.6.0 antlr4-python3-runtime==4.9.3 -anyio==4.2.0 +anyio==4.3.0 arrow==1.3.0 asciitree==0.3.3 astropy==5.2.2 @@ -30,7 +30,7 @@ botocore==1.27.59 certifi==2024.2.2 charset-normalizer==3.3.2 click==8.1.7 -cliff==4.5.0 +cliff==4.6.0 cloudpickle==3.0.0 cmaes==0.10.0 cmd2==2.4.3 @@ -46,9 +46,9 @@ Deprecated==1.2.14 distributed==2023.5.0 docker==7.0.0 e3nn==0.5.1 -edt==2.3.2 +edt==2.4.0 einops==0.7.0 -elementpath==4.2.1 +elementpath==4.3.0 entrypoints==0.4 escnn==1.0.11 exceptiongroup==1.2.0 @@ -57,10 +57,10 @@ fasteners==0.19 filelock==3.13.1 fire==0.5.0 Flask==3.0.2 -fonttools==4.48.1 +fonttools==4.49.0 frozenlist==1.4.1 fsspec==2023.3.0 -future==0.18.3 +future==1.0.0 geomloss==0.2.6 gitdb==4.0.11 gitpython==3.1.42 @@ -95,10 +95,10 @@ Mako==1.3.2 markdown==3.5.2 markdown-it-py==3.0.0 MarkupSafe==2.1.5 -matplotlib==3.7.4 +matplotlib==3.7.5 mdurl==0.1.2 mlflow==2.10.2 -monai-weekly==1.4.dev2406 +monai-weekly==1.4.dev2407 mpmath==1.3.0 msgpack==1.0.7 multidict==6.0.5 @@ -108,7 +108,7 @@ nibabel==5.2.0 Ninja==1.11.1.1 numcodecs==0.12.1 numpy==1.24.4 -ome-types==0.4.5 +ome-types==0.5.0 ome-zarr==0.8.3 omegaconf==2.3.0 opt-einsum==3.3.0 @@ -123,8 +123,8 @@ pbr==6.0.0 pillow==10.2.0 platformdirs==4.2.0 point-cloud-utils==0.30.4 -pooch==1.8.0 -PrettyTable==3.9.0 +pooch==1.8.1 +PrettyTable==3.10.0 protobuf==3.20.1 psutil==5.9.8 py3nj==0.1.2 @@ -140,7 +140,7 @@ pyntcloud==0.3.1 pyparsing==3.1.1 pyperclip==1.8.2 pyrootutils==1.0.4 -pyshtools==4.11.10 +pyshtools==4.10.3 python-dateutil==2.8.2 python-dotenv==1.0.1 python-editor==1.0.4 @@ -172,17 +172,17 @@ sqlalchemy==2.0.27 sqlparse==0.4.4 starlette==0.36.3 starsessions==1.3.0 -stevedore==5.1.0 +stevedore==5.2.0 sympy==1.12 tblib==3.0.0 termcolor==2.4.0 threadpoolctl==3.3.0 tifffile==2023.7.10 -timm==0.9.12 +timm==0.9.16 toolz==0.12.1 torch==2.0.1 -torch-geometric==2.4.0 -torchio==0.19.5 +torch-geometric==2.5.0 +torchio==0.19.6 torchmetrics==1.3.1 torchserve==0.9.0 torchvision==0.15.2 @@ -192,7 +192,7 @@ traitlets==5.14.1 typer==0.9.0 types-python-dateutil==2.8.19.20240106 typing-extensions==4.9.0 -universal-pathlib==0.2.0 +universal-pathlib==0.2.1 urllib3==1.26.18 uvicorn==0.27.1 vtk==9.3.0 @@ -203,8 +203,8 @@ Werkzeug==3.0.1 wheel==0.42.0 wrapt==1.16.0 xarray==2023.1.0 -xmlschema==3.0.1 -xsdata==24.1 +xmlschema==3.0.2 +xsdata==24.2.1 yarl==1.9.4 zarr==2.16.1 zict==3.0.0 diff --git a/requirements/macos/docs-requirements.txt b/requirements/macos/docs-requirements.txt index c08ffa7ee..641af87dc 100644 --- a/requirements/macos/docs-requirements.txt +++ b/requirements/macos/docs-requirements.txt @@ -13,7 +13,7 @@ alembic==1.13.1 anndata==0.9.2 annotated-types==0.6.0 antlr4-python3-runtime==4.9.3 -anyio==4.2.0 +anyio==4.3.0 arrow==1.3.0 asciitree==0.3.3 astropy==5.2.2 @@ -32,7 +32,7 @@ botocore==1.27.59 certifi==2024.2.2 charset-normalizer==3.3.2 click==8.1.7 -cliff==4.5.0 +cliff==4.6.0 cloudpickle==3.0.0 cmaes==0.10.0 cmd2==2.4.3 @@ -49,9 +49,9 @@ distributed==2023.5.0 docker==7.0.0 docutils==0.19 e3nn==0.5.1 -edt==2.3.2 +edt==2.4.0 einops==0.7.0 -elementpath==4.2.1 +elementpath==4.3.0 entrypoints==0.4 escnn==1.0.11 exceptiongroup==1.2.0 @@ -60,11 +60,11 @@ fasteners==0.19 filelock==3.13.1 fire==0.5.0 Flask==3.0.2 -fonttools==4.48.1 +fonttools==4.49.0 frozenlist==1.4.1 fsspec==2023.3.0 furo==2023.3.23 -future==0.18.3 +future==1.0.0 geomloss==0.2.6 gitdb==4.0.11 gitpython==3.1.42 @@ -101,11 +101,11 @@ Mako==1.3.2 markdown==3.5.2 markdown-it-py==3.0.0 MarkupSafe==2.1.5 -matplotlib==3.7.4 +matplotlib==3.7.5 mdurl==0.1.2 mistune==0.8.4 mlflow==2.10.2 -monai-weekly==1.4.dev2406 +monai-weekly==1.4.dev2407 mpmath==1.3.0 msgpack==1.0.7 multidict==6.0.5 @@ -115,7 +115,7 @@ nibabel==5.2.0 Ninja==1.11.1.1 numcodecs==0.12.1 numpy==1.24.4 -ome-types==0.4.5 +ome-types==0.5.0 ome-zarr==0.8.3 omegaconf==2.3.0 opt-einsum==3.3.0 @@ -130,8 +130,8 @@ pbr==6.0.0 pillow==10.2.0 platformdirs==4.2.0 point-cloud-utils==0.30.4 -pooch==1.8.0 -PrettyTable==3.9.0 +pooch==1.8.1 +PrettyTable==3.10.0 protobuf==3.20.1 psutil==5.9.8 py3nj==0.1.2 @@ -147,7 +147,7 @@ pyntcloud==0.3.1 pyparsing==3.1.1 pyperclip==1.8.2 pyrootutils==1.0.4 -pyshtools==4.11.10 +pyshtools==4.10.3 python-dateutil==2.8.2 python-dotenv==1.0.1 python-editor==1.0.4 @@ -188,17 +188,17 @@ sqlalchemy==2.0.27 sqlparse==0.4.4 starlette==0.36.3 starsessions==1.3.0 -stevedore==5.1.0 +stevedore==5.2.0 sympy==1.12 tblib==3.0.0 termcolor==2.4.0 threadpoolctl==3.3.0 tifffile==2023.7.10 -timm==0.9.12 +timm==0.9.16 toolz==0.12.1 torch==2.0.1 -torch-geometric==2.4.0 -torchio==0.19.5 +torch-geometric==2.5.0 +torchio==0.19.6 torchmetrics==1.3.1 torchserve==0.9.0 torchvision==0.15.2 @@ -208,7 +208,7 @@ traitlets==5.14.1 typer==0.9.0 types-python-dateutil==2.8.19.20240106 typing-extensions==4.9.0 -universal-pathlib==0.2.0 +universal-pathlib==0.2.1 urllib3==1.26.18 uvicorn==0.27.1 vtk==9.3.0 @@ -219,8 +219,8 @@ Werkzeug==3.0.1 wheel==0.42.0 wrapt==1.16.0 xarray==2023.1.0 -xmlschema==3.0.1 -xsdata==24.1 +xmlschema==3.0.2 +xsdata==24.2.1 yarl==1.9.4 zarr==2.16.1 zict==3.0.0 diff --git a/requirements/macos/equiv-requirements.txt b/requirements/macos/equiv-requirements.txt index 669dc7e1f..eb339354f 100644 --- a/requirements/macos/equiv-requirements.txt +++ b/requirements/macos/equiv-requirements.txt @@ -10,7 +10,7 @@ alembic==1.13.1 anndata==0.9.2 annotated-types==0.6.0 antlr4-python3-runtime==4.9.3 -anyio==4.2.0 +anyio==4.3.0 arrow==1.3.0 asciitree==0.3.3 astropy==5.2.2 @@ -28,7 +28,7 @@ botocore==1.27.59 certifi==2024.2.2 charset-normalizer==3.3.2 click==8.1.7 -cliff==4.5.0 +cliff==4.6.0 cloudpickle==3.0.0 cmaes==0.10.0 cmd2==2.4.3 @@ -42,9 +42,9 @@ deepdiff==6.7.1 distributed==2023.5.0 docker==7.0.0 e3nn==0.5.1 -edt==2.3.2 +edt==2.4.0 einops==0.7.0 -elementpath==4.2.1 +elementpath==4.3.0 entrypoints==0.4 escnn==1.0.11 exceptiongroup==1.2.0 @@ -53,10 +53,10 @@ fasteners==0.19 filelock==3.13.1 fire==0.5.0 Flask==3.0.2 -fonttools==4.48.1 +fonttools==4.49.0 frozenlist==1.4.1 fsspec==2023.3.0 -future==0.18.3 +future==1.0.0 gitdb==4.0.11 gitpython==3.1.42 greenlet==3.0.3 @@ -88,10 +88,10 @@ Mako==1.3.2 markdown==3.5.2 markdown-it-py==3.0.0 MarkupSafe==2.1.5 -matplotlib==3.7.4 +matplotlib==3.7.5 mdurl==0.1.2 mlflow==2.10.2 -monai-weekly==1.4.dev2406 +monai-weekly==1.4.dev2407 mpmath==1.3.0 msgpack==1.0.7 multidict==6.0.5 @@ -99,7 +99,7 @@ natsort==8.4.0 networkx==3.1 numcodecs==0.12.1 numpy==1.24.4 -ome-types==0.4.5 +ome-types==0.5.0 ome-zarr==0.8.3 omegaconf==2.3.0 opt-einsum==3.3.0 @@ -112,7 +112,7 @@ pandas==1.5.3 partd==1.4.1 pbr==6.0.0 pillow==10.2.0 -PrettyTable==3.9.0 +PrettyTable==3.10.0 protobuf==3.20.1 psutil==5.9.8 py3nj==0.1.2 @@ -156,13 +156,13 @@ sqlalchemy==2.0.27 sqlparse==0.4.4 starlette==0.36.3 starsessions==1.3.0 -stevedore==5.1.0 +stevedore==5.2.0 sympy==1.12 tblib==3.0.0 termcolor==2.4.0 threadpoolctl==3.3.0 tifffile==2023.7.10 -timm==0.9.12 +timm==0.9.16 toolz==0.12.1 torch==2.0.1 torchmetrics==1.3.1 @@ -172,7 +172,7 @@ tqdm==4.66.2 traitlets==5.14.1 types-python-dateutil==2.8.19.20240106 typing-extensions==4.9.0 -universal-pathlib==0.2.0 +universal-pathlib==0.2.1 urllib3==1.26.18 uvicorn==0.27.1 wcwidth==0.2.13 @@ -181,8 +181,8 @@ websockets==12.0 Werkzeug==3.0.1 wrapt==1.16.0 xarray==2023.1.0 -xmlschema==3.0.1 -xsdata==24.1 +xmlschema==3.0.2 +xsdata==24.2.1 yarl==1.9.4 zarr==2.16.1 zict==3.0.0 diff --git a/requirements/macos/pdm.lock b/requirements/macos/pdm.lock index 35fa0f85a..e80dc9e33 100644 --- a/requirements/macos/pdm.lock +++ b/requirements/macos/pdm.lock @@ -6,7 +6,7 @@ groups = ["default", "all", "docs", "equiv", "pcloud", "s3", "spharm", "test", " cross_platform = false static_urls = false lock_version = "4.3" -content_hash = "sha256:c392677f3db2f3745ea6275db9235c2d1c74568ca72edc636c8237f1a30a717e" +content_hash = 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[[package]] name = "timm" -version = "0.9.12" -requires_python = ">=3.7" +version = "0.9.16" +requires_python = ">=3.8" summary = "PyTorch Image Models" dependencies = [ "huggingface-hub", "pyyaml", "safetensors", - "torch>=1.7", + "torch", "torchvision", ] files = [ - {file = "timm-0.9.12-py3-none-any.whl", hash = "sha256:2a828afac5b710a80ec66d0f85807e171e342faf5c0703b33102d8aa206f19dc"}, - {file = "timm-0.9.12.tar.gz", hash = "sha256:9121d1cf320f7f32490d893340fd33117bda0a0270eb8282dfd52ae5fd3e1af6"}, + {file = "timm-0.9.16-py3-none-any.whl", hash = "sha256:bf5704014476ab011589d3c14172ee4c901fd18f9110a928019cac5be2945914"}, + {file = "timm-0.9.16.tar.gz", hash = "sha256:891e54f375d55adf31a71ab0c117761f0e472f9f3971858ecdd1e7376b7071e6"}, ] [[package]] @@ -2705,10 +2706,12 @@ files = [ [[package]] name = "torch-geometric" -version = "2.4.0" +version = "2.5.0" requires_python = ">=3.8" summary = "Graph Neural Network Library for PyTorch" dependencies = [ + "aiohttp", + "fsspec", "jinja2", "numpy", "psutil>=5.8.0", @@ -2719,14 +2722,14 @@ dependencies = [ "tqdm", ] files = [ - {file = "torch_geometric-2.4.0-py3-none-any.whl", hash = "sha256:9d8eb5eec44382f4072aa5e835450f144e9edb9d164627e532e311880b6bdad0"}, - {file = "torch_geometric-2.4.0.tar.gz", hash = "sha256:343c6906d0678f16553c2d02b7267d0ec77eafb5b44324070ebcf7da8a934557"}, + {file = "torch_geometric-2.5.0-py3-none-any.whl", hash = "sha256:9322fef81189d870b08b5a8b44957c768c9e0ba431a81e6bd0d7cb39fcb87de8"}, + {file = "torch_geometric-2.5.0.tar.gz", hash = "sha256:f4f4a57fd885c74e982d570df3a259ffff5adbb4ad7a3a95aabf5ace5fa7a240"}, ] [[package]] name = "torchio" -version = "0.19.5" -requires_python = "<3.12,>=3.8" +version = "0.19.6" +requires_python = "<3.13,>=3.8" summary = "Tools for medical image processing with PyTorch" dependencies = [ "Deprecated", @@ -2740,8 +2743,8 @@ dependencies = [ "typer[all]", ] files = [ - {file = "torchio-0.19.5-py2.py3-none-any.whl", hash = "sha256:fa9921a9afc0b15bc4be5abcb876b76087e262c91de5e5002c6d4710f693c34e"}, - {file = "torchio-0.19.5.tar.gz", hash = "sha256:f52b52caa874ed491e2fbf065fd2644f903c9233612b5e8fd12c5ea36983f434"}, + {file = "torchio-0.19.6-py2.py3-none-any.whl", hash = "sha256:ffa06bae3e8cda2c8abcbb952f2d3f9318a1e92bfe3a994845e70f40e8aacfbb"}, + {file = "torchio-0.19.6.tar.gz", hash = "sha256:c3afe16c3d822b6cb4aa103ffd6ec28816c95faa03cbeb22f33ff4cf81ec05df"}, ] [[package]] @@ -2873,15 +2876,15 @@ files = [ [[package]] name = "universal-pathlib" -version = "0.2.0" +version = "0.2.1" requires_python = ">=3.8" summary = "pathlib api extended to use fsspec backends" dependencies = [ "fsspec>=2022.1.0", ] files = [ - {file = "universal_pathlib-0.2.0-py3-none-any.whl", hash = "sha256:e842d1d95ee2d5685f5512039cb9d3d70abac670046ed794b034bfffd4d02576"}, - {file = "universal_pathlib-0.2.0.tar.gz", hash = "sha256:1cbd589d1c3ebbb787ad866527f785daff0de20b7540aa557b8285a05a176912"}, + {file = "universal_pathlib-0.2.1-py3-none-any.whl", hash = "sha256:bb14881f1c6c025c654a658c253b4cf89e8238dff6d3c847aa5723899227f85e"}, + {file = "universal_pathlib-0.2.1.tar.gz", hash = "sha256:fda2f484d875c26079771f94acfef58647eed80efce75f0bf8824373b432e802"}, ] [[package]] @@ -3002,28 +3005,28 @@ files = [ [[package]] name = "xmlschema" -version = "3.0.1" +version = "3.0.2" requires_python = ">=3.8" summary = "An XML Schema validator and decoder" dependencies = [ - "elementpath<5.0.0,>=4.1.5", + "elementpath<5.0.0,>=4.3.0", ] files = [ - {file = "xmlschema-3.0.1-py3-none-any.whl", hash = "sha256:116243b2ad38cd2df9ee0606d4e4e898a6f156736b39ab0017e6f49862c0809e"}, - {file = "xmlschema-3.0.1.tar.gz", hash = "sha256:bb24a5f4738e49d85d9eb03a2b5af26bbbbfdb055517ad953d98925094b8c026"}, + {file = "xmlschema-3.0.2-py3-none-any.whl", hash = "sha256:c8935f81e1645df3e71136805c7206871268aa8c6e31e3667ea23746f22fea0a"}, + {file = "xmlschema-3.0.2.tar.gz", hash = "sha256:b2526e91695905aa62d4aa2b68349565a168fedf88ada0005f5e0dd21da9734b"}, ] [[package]] name = "xsdata" -version = "24.1" +version = "24.2.1" requires_python = ">=3.8" summary = "Python XML Binding" dependencies = [ "typing-extensions", ] files = [ - {file = "xsdata-24.1-py3-none-any.whl", hash = "sha256:314eba1e50219e3393fa3814f51b426646ae0bb9a416ecc5b6d93bcb08e88416"}, - {file = "xsdata-24.1.tar.gz", hash = "sha256:e36fc8b4624bbbaf2d34d0857c6d78ede99ec1d3240cc7dd50546177fbb52442"}, + {file = "xsdata-24.2.1-py3-none-any.whl", hash = "sha256:b5fa19482a059a58dd0f6a237d7a1dee742f7acc5267b51faa7a4d1830603e41"}, + {file = "xsdata-24.2.1.tar.gz", hash = "sha256:4630515935eb23a43942c4c2c4596e6ee11fab6223850380155b4f29d65d67c1"}, ] [[package]] diff --git a/requirements/macos/requirements.txt b/requirements/macos/requirements.txt index aee17bf45..4a3b0e786 100644 --- a/requirements/macos/requirements.txt +++ b/requirements/macos/requirements.txt @@ -8,7 +8,7 @@ alembic==1.13.1 anndata==0.9.2 annotated-types==0.6.0 antlr4-python3-runtime==4.9.3 -anyio==4.2.0 +anyio==4.3.0 arrow==1.3.0 asciitree==0.3.3 astropy==5.2.2 @@ -20,12 +20,12 @@ beautifulsoup4==4.12.3 bfio==2.3.0 blessed==1.20.0 blinker==1.7.0 -boto3==1.34.42 -botocore==1.34.42 +boto3==1.34.48 +botocore==1.34.48 certifi==2024.2.2 charset-normalizer==3.3.2 click==8.1.7 -cliff==4.5.0 +cliff==4.6.0 cloudpickle==3.0.0 cmaes==0.10.0 cmd2==2.4.3 @@ -38,9 +38,9 @@ dateutils==0.6.12 deepdiff==6.7.1 distributed==2023.5.0 docker==7.0.0 -edt==2.3.2 +edt==2.4.0 einops==0.7.0 -elementpath==4.2.1 +elementpath==4.3.0 entrypoints==0.4 exceptiongroup==1.2.0 fastapi==0.109.2 @@ -48,11 +48,11 @@ fasteners==0.19 filelock==3.13.1 fire==0.5.0 Flask==3.0.2 -fonttools==4.48.1 +fonttools==4.49.0 frozenlist==1.4.1 fsspec==2024.2.0 gitdb==4.0.11 -gitpython==3.1.41 +gitpython==3.1.42 greenlet==3.0.3 gunicorn==21.2.0 h11==0.14.0 @@ -81,10 +81,10 @@ Mako==1.3.2 markdown==3.5.2 markdown-it-py==3.0.0 MarkupSafe==2.1.5 -matplotlib==3.7.4 +matplotlib==3.7.5 mdurl==0.1.2 mlflow==2.10.2 -monai-weekly==1.4.dev2406 +monai-weekly==1.4.dev2407 mpmath==1.3.0 msgpack==1.0.7 multidict==6.0.5 @@ -92,7 +92,7 @@ natsort==8.4.0 networkx==3.1 numcodecs==0.12.1 numpy==1.24.4 -ome-types==0.4.5 +ome-types==0.5.0 ome-zarr==0.8.3 omegaconf==2.3.0 optuna==2.10.1 @@ -103,7 +103,7 @@ pandas==1.5.3 partd==1.4.1 pbr==6.0.0 pillow==10.2.0 -PrettyTable==3.9.0 +PrettyTable==3.10.0 protobuf==3.20.1 psutil==5.9.8 pyarrow==10.0.1 @@ -145,13 +145,13 @@ sqlalchemy==2.0.27 sqlparse==0.4.4 starlette==0.36.3 starsessions==1.3.0 -stevedore==5.1.0 +stevedore==5.2.0 sympy==1.12 tblib==3.0.0 termcolor==2.4.0 threadpoolctl==3.3.0 tifffile==2023.7.10 -timm==0.9.12 +timm==0.9.16 toolz==0.12.1 torch==2.0.1 torchmetrics==1.3.1 @@ -161,7 +161,7 @@ tqdm==4.66.2 traitlets==5.14.1 types-python-dateutil==2.8.19.20240106 typing-extensions==4.9.0 -universal-pathlib==0.2.0 +universal-pathlib==0.2.1 urllib3==2.0.7 uvicorn==0.27.1 wcwidth==0.2.13 @@ -170,8 +170,8 @@ websockets==12.0 Werkzeug==3.0.1 wrapt==1.16.0 xarray==2023.1.0 -xmlschema==3.0.1 -xsdata==24.1 +xmlschema==3.0.2 +xsdata==24.2.1 yarl==1.9.4 zarr==2.16.1 zict==3.0.0 diff --git a/requirements/macos/spharm-requirements.txt b/requirements/macos/spharm-requirements.txt index 15e7105f2..cbc2a04fb 100644 --- a/requirements/macos/spharm-requirements.txt +++ b/requirements/macos/spharm-requirements.txt @@ -12,7 +12,7 @@ alembic==1.13.1 anndata==0.9.2 annotated-types==0.6.0 antlr4-python3-runtime==4.9.3 -anyio==4.2.0 +anyio==4.3.0 arrow==1.3.0 asciitree==0.3.3 astropy==5.2.2 @@ -29,7 +29,7 @@ botocore==1.27.59 certifi==2024.2.2 charset-normalizer==3.3.2 click==8.1.7 -cliff==4.5.0 +cliff==4.6.0 cloudpickle==3.0.0 cmaes==0.10.0 cmd2==2.4.3 @@ -42,9 +42,9 @@ dateutils==0.6.12 deepdiff==6.7.1 distributed==2023.5.0 docker==7.0.0 -edt==2.3.2 +edt==2.4.0 einops==0.7.0 -elementpath==4.2.1 +elementpath==4.3.0 entrypoints==0.4 exceptiongroup==1.2.0 fastapi==0.109.2 @@ -52,7 +52,7 @@ fasteners==0.19 filelock==3.13.1 fire==0.5.0 Flask==3.0.2 -fonttools==4.48.1 +fonttools==4.49.0 frozenlist==1.4.1 fsspec==2023.3.0 gitdb==4.0.11 @@ -85,10 +85,10 @@ Mako==1.3.2 markdown==3.5.2 markdown-it-py==3.0.0 MarkupSafe==2.1.5 -matplotlib==3.7.4 +matplotlib==3.7.5 mdurl==0.1.2 mlflow==2.10.2 -monai-weekly==1.4.dev2406 +monai-weekly==1.4.dev2407 mpmath==1.3.0 msgpack==1.0.7 multidict==6.0.5 @@ -96,7 +96,7 @@ natsort==8.4.0 networkx==3.1 numcodecs==0.12.1 numpy==1.24.4 -ome-types==0.4.5 +ome-types==0.5.0 ome-zarr==0.8.3 omegaconf==2.3.0 optuna==2.10.1 @@ -108,8 +108,8 @@ partd==1.4.1 pbr==6.0.0 pillow==10.2.0 platformdirs==4.2.0 -pooch==1.8.0 -PrettyTable==3.9.0 +pooch==1.8.1 +PrettyTable==3.10.0 protobuf==3.20.1 psutil==5.9.8 pyarrow==10.0.1 @@ -122,7 +122,7 @@ pyjwt==2.8.0 pyparsing==3.1.1 pyperclip==1.8.2 pyrootutils==1.0.4 -pyshtools==4.11.10 +pyshtools==4.10.3 python-dateutil==2.8.2 python-dotenv==1.0.1 python-editor==1.0.4 @@ -152,13 +152,13 @@ sqlalchemy==2.0.27 sqlparse==0.4.4 starlette==0.36.3 starsessions==1.3.0 -stevedore==5.1.0 +stevedore==5.2.0 sympy==1.12 tblib==3.0.0 termcolor==2.4.0 threadpoolctl==3.3.0 tifffile==2023.7.10 -timm==0.9.12 +timm==0.9.16 toolz==0.12.1 torch==2.0.1 torchmetrics==1.3.1 @@ -168,7 +168,7 @@ tqdm==4.66.2 traitlets==5.14.1 types-python-dateutil==2.8.19.20240106 typing-extensions==4.9.0 -universal-pathlib==0.2.0 +universal-pathlib==0.2.1 urllib3==1.26.18 uvicorn==0.27.1 vtk==9.3.0 @@ -178,8 +178,8 @@ websockets==12.0 Werkzeug==3.0.1 wrapt==1.16.0 xarray==2023.1.0 -xmlschema==3.0.1 -xsdata==24.1 +xmlschema==3.0.2 +xsdata==24.2.1 yarl==1.9.4 zarr==2.16.1 zict==3.0.0 diff --git a/requirements/macos/test-requirements.txt b/requirements/macos/test-requirements.txt index 70524dbea..99fc1bd71 100644 --- a/requirements/macos/test-requirements.txt +++ b/requirements/macos/test-requirements.txt @@ -12,7 +12,7 @@ alembic==1.13.1 anndata==0.9.2 annotated-types==0.6.0 antlr4-python3-runtime==4.9.3 -anyio==4.2.0 +anyio==4.3.0 arrow==1.3.0 asciitree==0.3.3 astropy==5.2.2 @@ -30,14 +30,14 @@ botocore==1.27.59 certifi==2024.2.2 charset-normalizer==3.3.2 click==8.1.7 -cliff==4.5.0 +cliff==4.6.0 cloudpickle==3.0.0 cmaes==0.10.0 cmd2==2.4.3 colorama==0.4.6 colorlog==6.8.2 contourpy==1.1.1 -coverage==7.4.1 +coverage==7.4.2 croniter==1.4.1 cycler==0.12.1 dask==2023.5.0 @@ -47,9 +47,9 @@ Deprecated==1.2.14 distributed==2023.5.0 docker==7.0.0 e3nn==0.5.1 -edt==2.3.2 +edt==2.4.0 einops==0.7.0 -elementpath==4.2.1 +elementpath==4.3.0 entrypoints==0.4 escnn==1.0.11 exceptiongroup==1.2.0 @@ -58,10 +58,10 @@ fasteners==0.19 filelock==3.13.1 fire==0.5.0 Flask==3.0.2 -fonttools==4.48.1 +fonttools==4.49.0 frozenlist==1.4.1 fsspec==2023.3.0 -future==0.18.3 +future==1.0.0 geomloss==0.2.6 gitdb==4.0.11 gitpython==3.1.42 @@ -97,10 +97,10 @@ Mako==1.3.2 markdown==3.5.2 markdown-it-py==3.0.0 MarkupSafe==2.1.5 -matplotlib==3.7.4 +matplotlib==3.7.5 mdurl==0.1.2 mlflow==2.10.2 -monai-weekly==1.4.dev2406 +monai-weekly==1.4.dev2407 mpmath==1.3.0 msgpack==1.0.7 multidict==6.0.5 @@ -110,7 +110,7 @@ nibabel==5.2.0 Ninja==1.11.1.1 numcodecs==0.12.1 numpy==1.24.4 -ome-types==0.4.5 +ome-types==0.5.0 ome-zarr==0.8.3 omegaconf==2.3.0 opt-einsum==3.3.0 @@ -126,8 +126,8 @@ pillow==10.2.0 platformdirs==4.2.0 pluggy==1.4.0 point-cloud-utils==0.30.4 -pooch==1.8.0 -PrettyTable==3.9.0 +pooch==1.8.1 +PrettyTable==3.10.0 protobuf==3.20.1 psutil==5.9.8 py3nj==0.1.2 @@ -143,7 +143,7 @@ pyntcloud==0.3.1 pyparsing==3.1.1 pyperclip==1.8.2 pyrootutils==1.0.4 -pyshtools==4.11.10 +pyshtools==4.10.3 pytest==7.4.4 pytest-cov==4.1.0 python-dateutil==2.8.2 @@ -177,18 +177,18 @@ sqlalchemy==2.0.27 sqlparse==0.4.4 starlette==0.36.3 starsessions==1.3.0 -stevedore==5.1.0 +stevedore==5.2.0 sympy==1.12 tblib==3.0.0 termcolor==2.4.0 threadpoolctl==3.3.0 tifffile==2023.7.10 -timm==0.9.12 +timm==0.9.16 tomli==2.0.1 toolz==0.12.1 torch==2.0.1 -torch-geometric==2.4.0 -torchio==0.19.5 +torch-geometric==2.5.0 +torchio==0.19.6 torchmetrics==1.3.1 torchserve==0.9.0 torchvision==0.15.2 @@ -198,7 +198,7 @@ traitlets==5.14.1 typer==0.9.0 types-python-dateutil==2.8.19.20240106 typing-extensions==4.9.0 -universal-pathlib==0.2.0 +universal-pathlib==0.2.1 urllib3==1.26.18 uvicorn==0.27.1 vtk==9.3.0 @@ -209,8 +209,8 @@ Werkzeug==3.0.1 wheel==0.42.0 wrapt==1.16.0 xarray==2023.1.0 -xmlschema==3.0.1 -xsdata==24.1 +xmlschema==3.0.2 +xsdata==24.2.1 yarl==1.9.4 zarr==2.16.1 zict==3.0.0 diff --git a/requirements/macos/torchserve-requirements.txt b/requirements/macos/torchserve-requirements.txt index 176d5e097..9d0bb39ad 100644 --- a/requirements/macos/torchserve-requirements.txt +++ b/requirements/macos/torchserve-requirements.txt @@ -10,7 +10,7 @@ alembic==1.13.1 anndata==0.9.2 annotated-types==0.6.0 antlr4-python3-runtime==4.9.3 -anyio==4.2.0 +anyio==4.3.0 arrow==1.3.0 asciitree==0.3.3 astropy==5.2.2 @@ -27,7 +27,7 @@ botocore==1.27.59 certifi==2024.2.2 charset-normalizer==3.3.2 click==8.1.7 -cliff==4.5.0 +cliff==4.6.0 cloudpickle==3.0.0 cmaes==0.10.0 cmd2==2.4.3 @@ -40,9 +40,9 @@ dateutils==0.6.12 deepdiff==6.7.1 distributed==2023.5.0 docker==7.0.0 -edt==2.3.2 +edt==2.4.0 einops==0.7.0 -elementpath==4.2.1 +elementpath==4.3.0 entrypoints==0.4 exceptiongroup==1.2.0 fastapi==0.109.2 @@ -50,7 +50,7 @@ fasteners==0.19 filelock==3.13.1 fire==0.5.0 Flask==3.0.2 -fonttools==4.48.1 +fonttools==4.49.0 frozenlist==1.4.1 fsspec==2023.3.0 gitdb==4.0.11 @@ -84,10 +84,10 @@ Mako==1.3.2 markdown==3.5.2 markdown-it-py==3.0.0 MarkupSafe==2.1.5 -matplotlib==3.7.4 +matplotlib==3.7.5 mdurl==0.1.2 mlflow==2.10.2 -monai-weekly==1.4.dev2406 +monai-weekly==1.4.dev2407 mpmath==1.3.0 msgpack==1.0.7 multidict==6.0.5 @@ -95,7 +95,7 @@ natsort==8.4.0 networkx==3.1 numcodecs==0.12.1 numpy==1.24.4 -ome-types==0.4.5 +ome-types==0.5.0 ome-zarr==0.8.3 omegaconf==2.3.0 optuna==2.10.1 @@ -106,7 +106,7 @@ pandas==1.5.3 partd==1.4.1 pbr==6.0.0 pillow==10.2.0 -PrettyTable==3.9.0 +PrettyTable==3.10.0 protobuf==3.20.1 psutil==5.9.8 pyarrow==10.0.1 @@ -148,13 +148,13 @@ sqlalchemy==2.0.27 sqlparse==0.4.4 starlette==0.36.3 starsessions==1.3.0 -stevedore==5.1.0 +stevedore==5.2.0 sympy==1.12 tblib==3.0.0 termcolor==2.4.0 threadpoolctl==3.3.0 tifffile==2023.7.10 -timm==0.9.12 +timm==0.9.16 toolz==0.12.1 torch==2.0.1 torchmetrics==1.3.1 @@ -165,7 +165,7 @@ tqdm==4.66.2 traitlets==5.14.1 types-python-dateutil==2.8.19.20240106 typing-extensions==4.9.0 -universal-pathlib==0.2.0 +universal-pathlib==0.2.1 urllib3==1.26.18 uvicorn==0.27.1 wcwidth==0.2.13 @@ -175,8 +175,8 @@ Werkzeug==3.0.1 wheel==0.42.0 wrapt==1.16.0 xarray==2023.1.0 -xmlschema==3.0.1 -xsdata==24.1 +xmlschema==3.0.2 +xsdata==24.2.1 yarl==1.9.4 zarr==2.16.1 zict==3.0.0 diff --git a/requirements/windows/all-requirements.txt b/requirements/windows/all-requirements.txt index ee4482b61..2df4bf07f 100644 --- a/requirements/windows/all-requirements.txt +++ b/requirements/windows/all-requirements.txt @@ -13,7 +13,7 @@ anndata==0.9.2 annotated-types==0.6.0 ansicon==1.89.0 antlr4-python3-runtime==4.9.3 -anyio==4.2.0 +anyio==4.3.0 arrow==1.3.0 asciitree==0.3.3 astropy==5.2.2 @@ -31,7 +31,7 @@ botocore==1.27.59 certifi==2024.2.2 charset-normalizer==3.3.2 click==8.1.7 -cliff==4.5.0 +cliff==4.6.0 cloudpickle==3.0.0 cmaes==0.10.0 cmd2==2.4.3 @@ -47,9 +47,9 @@ Deprecated==1.2.14 distributed==2023.5.0 docker==7.0.0 e3nn==0.5.1 -edt==2.3.2 +edt==2.4.0 einops==0.7.0 -elementpath==4.2.1 +elementpath==4.3.0 entrypoints==0.4 escnn==1.0.11 exceptiongroup==1.2.0 @@ -58,13 +58,13 @@ fasteners==0.19 filelock==3.13.1 fire==0.5.0 Flask==3.0.2 -fonttools==4.48.1 +fonttools==4.49.0 frozenlist==1.4.1 fsspec==2023.3.0 -future==0.18.3 +future==1.0.0 geomloss==0.2.6 gitdb==4.0.11 -gitpython==3.1.41 +gitpython==3.1.42 gorilla==0.4.0 greenlet==3.0.3 h11==0.14.0 @@ -96,10 +96,10 @@ Mako==1.3.2 markdown==3.5.2 markdown-it-py==3.0.0 MarkupSafe==2.1.5 -matplotlib==3.7.4 +matplotlib==3.7.5 mdurl==0.1.2 mlflow==2.10.2 -monai-weekly==1.4.dev2406 +monai-weekly==1.4.dev2407 mpmath==1.3.0 msgpack==1.0.7 multidict==6.0.5 @@ -109,7 +109,7 @@ nibabel==5.2.0 Ninja==1.11.1.1 numcodecs==0.12.1 numpy==1.24.4 -ome-types==0.4.5 +ome-types==0.5.0 ome-zarr==0.8.3 omegaconf==2.3.0 opt-einsum==3.3.0 @@ -124,8 +124,8 @@ pbr==6.0.0 pillow==10.2.0 platformdirs==4.2.0 point-cloud-utils==0.30.4 -pooch==1.8.0 -PrettyTable==3.9.0 +pooch==1.8.1 +PrettyTable==3.10.0 protobuf==3.20.1 psutil==5.9.8 py3nj==0.1.2 @@ -142,7 +142,7 @@ pyparsing==3.1.1 pyperclip==1.8.2 pyreadline3==3.4.1 pyrootutils==1.0.4 -pyshtools==4.11.10 +pyshtools==4.10.3 python-dateutil==2.8.2 python-dotenv==1.0.1 python-editor==1.0.4 @@ -175,17 +175,17 @@ sqlalchemy==2.0.27 sqlparse==0.4.4 starlette==0.36.3 starsessions==1.3.0 -stevedore==5.1.0 +stevedore==5.2.0 sympy==1.12 tblib==3.0.0 termcolor==2.4.0 threadpoolctl==3.3.0 tifffile==2023.7.10 -timm==0.9.12 +timm==0.9.16 toolz==0.12.1 torch==2.0.1 -torch-geometric==2.4.0 -torchio==0.19.5 +torch-geometric==2.5.0 +torchio==0.19.6 torchmetrics==1.3.1 torchserve==0.9.0 torchvision==0.15.2 @@ -195,7 +195,7 @@ traitlets==5.14.1 typer==0.9.0 types-python-dateutil==2.8.19.20240106 typing-extensions==4.9.0 -universal-pathlib==0.2.0 +universal-pathlib==0.2.1 urllib3==1.26.18 uvicorn==0.27.1 vtk==9.3.0 @@ -207,8 +207,8 @@ Werkzeug==3.0.1 wheel==0.42.0 wrapt==1.16.0 xarray==2023.1.0 -xmlschema==3.0.1 -xsdata==24.1 +xmlschema==3.0.2 +xsdata==24.2.1 yarl==1.9.4 zarr==2.16.1 zict==3.0.0 diff --git a/requirements/windows/docs-requirements.txt b/requirements/windows/docs-requirements.txt index 75bfe56fe..7502725a6 100644 --- a/requirements/windows/docs-requirements.txt +++ b/requirements/windows/docs-requirements.txt @@ -14,7 +14,7 @@ anndata==0.9.2 annotated-types==0.6.0 ansicon==1.89.0 antlr4-python3-runtime==4.9.3 -anyio==4.2.0 +anyio==4.3.0 arrow==1.3.0 asciitree==0.3.3 astropy==5.2.2 @@ -33,7 +33,7 @@ botocore==1.27.59 certifi==2024.2.2 charset-normalizer==3.3.2 click==8.1.7 -cliff==4.5.0 +cliff==4.6.0 cloudpickle==3.0.0 cmaes==0.10.0 cmd2==2.4.3 @@ -50,9 +50,9 @@ distributed==2023.5.0 docker==7.0.0 docutils==0.19 e3nn==0.5.1 -edt==2.3.2 +edt==2.4.0 einops==0.7.0 -elementpath==4.2.1 +elementpath==4.3.0 entrypoints==0.4 escnn==1.0.11 exceptiongroup==1.2.0 @@ -61,14 +61,14 @@ fasteners==0.19 filelock==3.13.1 fire==0.5.0 Flask==3.0.2 -fonttools==4.48.1 +fonttools==4.49.0 frozenlist==1.4.1 fsspec==2023.3.0 furo==2023.3.23 -future==0.18.3 +future==1.0.0 geomloss==0.2.6 gitdb==4.0.11 -gitpython==3.1.41 +gitpython==3.1.42 gorilla==0.4.0 greenlet==3.0.3 h11==0.14.0 @@ -102,11 +102,11 @@ Mako==1.3.2 markdown==3.5.2 markdown-it-py==3.0.0 MarkupSafe==2.1.5 -matplotlib==3.7.4 +matplotlib==3.7.5 mdurl==0.1.2 mistune==0.8.4 mlflow==2.10.2 -monai-weekly==1.4.dev2406 +monai-weekly==1.4.dev2407 mpmath==1.3.0 msgpack==1.0.7 multidict==6.0.5 @@ -116,7 +116,7 @@ nibabel==5.2.0 Ninja==1.11.1.1 numcodecs==0.12.1 numpy==1.24.4 -ome-types==0.4.5 +ome-types==0.5.0 ome-zarr==0.8.3 omegaconf==2.3.0 opt-einsum==3.3.0 @@ -131,8 +131,8 @@ pbr==6.0.0 pillow==10.2.0 platformdirs==4.2.0 point-cloud-utils==0.30.4 -pooch==1.8.0 -PrettyTable==3.9.0 +pooch==1.8.1 +PrettyTable==3.10.0 protobuf==3.20.1 psutil==5.9.8 py3nj==0.1.2 @@ -149,7 +149,7 @@ pyparsing==3.1.1 pyperclip==1.8.2 pyreadline3==3.4.1 pyrootutils==1.0.4 -pyshtools==4.11.10 +pyshtools==4.10.3 python-dateutil==2.8.2 python-dotenv==1.0.1 python-editor==1.0.4 @@ -191,17 +191,17 @@ sqlalchemy==2.0.27 sqlparse==0.4.4 starlette==0.36.3 starsessions==1.3.0 -stevedore==5.1.0 +stevedore==5.2.0 sympy==1.12 tblib==3.0.0 termcolor==2.4.0 threadpoolctl==3.3.0 tifffile==2023.7.10 -timm==0.9.12 +timm==0.9.16 toolz==0.12.1 torch==2.0.1 -torch-geometric==2.4.0 -torchio==0.19.5 +torch-geometric==2.5.0 +torchio==0.19.6 torchmetrics==1.3.1 torchserve==0.9.0 torchvision==0.15.2 @@ -211,7 +211,7 @@ traitlets==5.14.1 typer==0.9.0 types-python-dateutil==2.8.19.20240106 typing-extensions==4.9.0 -universal-pathlib==0.2.0 +universal-pathlib==0.2.1 urllib3==1.26.18 uvicorn==0.27.1 vtk==9.3.0 @@ -223,8 +223,8 @@ Werkzeug==3.0.1 wheel==0.42.0 wrapt==1.16.0 xarray==2023.1.0 -xmlschema==3.0.1 -xsdata==24.1 +xmlschema==3.0.2 +xsdata==24.2.1 yarl==1.9.4 zarr==2.16.1 zict==3.0.0 diff --git a/requirements/windows/equiv-requirements.txt b/requirements/windows/equiv-requirements.txt index a6782ab78..5ecf39aec 100644 --- a/requirements/windows/equiv-requirements.txt +++ b/requirements/windows/equiv-requirements.txt @@ -11,7 +11,7 @@ anndata==0.9.2 annotated-types==0.6.0 ansicon==1.89.0 antlr4-python3-runtime==4.9.3 -anyio==4.2.0 +anyio==4.3.0 arrow==1.3.0 asciitree==0.3.3 astropy==5.2.2 @@ -29,7 +29,7 @@ botocore==1.27.59 certifi==2024.2.2 charset-normalizer==3.3.2 click==8.1.7 -cliff==4.5.0 +cliff==4.6.0 cloudpickle==3.0.0 cmaes==0.10.0 cmd2==2.4.3 @@ -44,9 +44,9 @@ deepdiff==6.7.1 distributed==2023.5.0 docker==7.0.0 e3nn==0.5.1 -edt==2.3.2 +edt==2.4.0 einops==0.7.0 -elementpath==4.2.1 +elementpath==4.3.0 entrypoints==0.4 escnn==1.0.11 exceptiongroup==1.2.0 @@ -55,12 +55,12 @@ fasteners==0.19 filelock==3.13.1 fire==0.5.0 Flask==3.0.2 -fonttools==4.48.1 +fonttools==4.49.0 frozenlist==1.4.1 fsspec==2023.3.0 -future==0.18.3 +future==1.0.0 gitdb==4.0.11 -gitpython==3.1.41 +gitpython==3.1.42 greenlet==3.0.3 h11==0.14.0 h5py==3.10.0 @@ -90,10 +90,10 @@ Mako==1.3.2 markdown==3.5.2 markdown-it-py==3.0.0 MarkupSafe==2.1.5 -matplotlib==3.7.4 +matplotlib==3.7.5 mdurl==0.1.2 mlflow==2.10.2 -monai-weekly==1.4.dev2406 +monai-weekly==1.4.dev2407 mpmath==1.3.0 msgpack==1.0.7 multidict==6.0.5 @@ -101,7 +101,7 @@ natsort==8.4.0 networkx==3.1 numcodecs==0.12.1 numpy==1.24.4 -ome-types==0.4.5 +ome-types==0.5.0 ome-zarr==0.8.3 omegaconf==2.3.0 opt-einsum==3.3.0 @@ -114,7 +114,7 @@ pandas==1.5.3 partd==1.4.1 pbr==6.0.0 pillow==10.2.0 -PrettyTable==3.9.0 +PrettyTable==3.10.0 protobuf==3.20.1 psutil==5.9.8 py3nj==0.1.2 @@ -160,13 +160,13 @@ sqlalchemy==2.0.27 sqlparse==0.4.4 starlette==0.36.3 starsessions==1.3.0 -stevedore==5.1.0 +stevedore==5.2.0 sympy==1.12 tblib==3.0.0 termcolor==2.4.0 threadpoolctl==3.3.0 tifffile==2023.7.10 -timm==0.9.12 +timm==0.9.16 toolz==0.12.1 torch==2.0.1 torchmetrics==1.3.1 @@ -176,7 +176,7 @@ tqdm==4.66.2 traitlets==5.14.1 types-python-dateutil==2.8.19.20240106 typing-extensions==4.9.0 -universal-pathlib==0.2.0 +universal-pathlib==0.2.1 urllib3==1.26.18 uvicorn==0.27.1 waitress==2.1.2 @@ -186,8 +186,8 @@ websockets==12.0 Werkzeug==3.0.1 wrapt==1.16.0 xarray==2023.1.0 -xmlschema==3.0.1 -xsdata==24.1 +xmlschema==3.0.2 +xsdata==24.2.1 yarl==1.9.4 zarr==2.16.1 zict==3.0.0 diff --git a/requirements/windows/pdm.lock b/requirements/windows/pdm.lock index 3c79d7518..3e306228e 100644 --- a/requirements/windows/pdm.lock +++ b/requirements/windows/pdm.lock @@ -6,7 +6,7 @@ groups = ["default", "all", "docs", "equiv", "pcloud", "s3", "spharm", "test", " cross_platform = false static_urls = false lock_version = "4.3" -content_hash = "sha256:c392677f3db2f3745ea6275db9235c2d1c74568ca72edc636c8237f1a30a717e" +content_hash = "sha256:c90aefee5ab3fe56c13f803b43b106b586bad6483a7acd815767b87e85b7330c" [[package]] name = "aicscytoparam" @@ -199,7 +199,7 @@ files = [ [[package]] name = "anyio" -version = "4.2.0" +version = "4.3.0" requires_python = ">=3.8" summary = "High level compatibility layer for multiple asynchronous event loop implementations" dependencies = [ @@ -209,8 +209,8 @@ dependencies = [ "typing-extensions>=4.1; python_version < \"3.11\"", ] files = [ - {file = "anyio-4.2.0-py3-none-any.whl", hash = "sha256:745843b39e829e108e518c489b31dc757de7d2131d53fac32bd8df268227bfee"}, - {file = "anyio-4.2.0.tar.gz", hash = "sha256:e1875bb4b4e2de1669f4bc7869b6d3f54231cdced71605e6e64c9be77e3be50f"}, + {file = "anyio-4.3.0-py3-none-any.whl", hash = "sha256:048e05d0f6caeed70d731f3db756d35dcc1f35747c8c403364a8332c630441b8"}, + {file = "anyio-4.3.0.tar.gz", hash = "sha256:f75253795a87df48568485fd18cdd2a3fa5c4f7c5be8e5e36637733fce06fed6"}, ] [[package]] @@ -435,7 +435,7 @@ files = [ [[package]] name = "cliff" -version = "4.5.0" +version = "4.6.0" requires_python = ">=3.8" summary = "Command Line Interface Formulation Framework" dependencies = [ @@ -446,8 +446,8 @@ dependencies = [ "stevedore>=2.0.1", ] files = [ - {file = "cliff-4.5.0-py3-none-any.whl", hash = "sha256:0cb50f41e13fb90d32e5a66969966427cbbef98ef397cef4eb78bfad52ef747c"}, - {file = "cliff-4.5.0.tar.gz", hash = "sha256:61beeac238530beb3ae19eefb421b8b290b97dcc9efee01fc32fe62fb75a31d9"}, + {file = "cliff-4.6.0-py3-none-any.whl", hash = "sha256:58a90e87738b9a7df672a5f9627bcd668564d01d8e567170dfe2d3a0026adb31"}, + {file = "cliff-4.6.0.tar.gz", hash = "sha256:2f38ce8bd1ea4958d66f15b066ac47e65d61f600b9319b921e12e9e9cbcd99d0"}, ] [[package]] @@ -527,27 +527,27 @@ files = [ [[package]] name = "coverage" -version = "7.4.1" +version = "7.4.2" requires_python = ">=3.8" summary = "Code coverage measurement for Python" files = [ - {file = "coverage-7.4.1-cp310-cp310-win_amd64.whl", hash = "sha256:869b5046d41abfea3e381dd143407b0d29b8282a904a19cb908fa24d090cc018"}, - {file = "coverage-7.4.1.tar.gz", hash = "sha256:1ed4b95480952b1a26d863e546fa5094564aa0065e1e5f0d4d0041f293251d04"}, + {file = "coverage-7.4.2-cp310-cp310-win_amd64.whl", hash = "sha256:7df95fdd1432a5d2675ce630fef5f239939e2b3610fe2f2b5bf21fa505256fa3"}, + {file = "coverage-7.4.2.tar.gz", hash = "sha256:1a5ee18e3a8d766075ce9314ed1cb695414bae67df6a4b0805f5137d93d6f1cb"}, ] [[package]] name = "coverage" -version = "7.4.1" +version = "7.4.2" extras = ["toml"] requires_python = ">=3.8" summary = "Code coverage measurement for Python" dependencies = [ - "coverage==7.4.1", + "coverage==7.4.2", "tomli; python_full_version <= \"3.11.0a6\"", ] files = [ - {file = "coverage-7.4.1-cp310-cp310-win_amd64.whl", hash = "sha256:869b5046d41abfea3e381dd143407b0d29b8282a904a19cb908fa24d090cc018"}, - {file = "coverage-7.4.1.tar.gz", hash = "sha256:1ed4b95480952b1a26d863e546fa5094564aa0065e1e5f0d4d0041f293251d04"}, + {file = "coverage-7.4.2-cp310-cp310-win_amd64.whl", hash = "sha256:7df95fdd1432a5d2675ce630fef5f239939e2b3610fe2f2b5bf21fa505256fa3"}, + {file = "coverage-7.4.2.tar.gz", hash = "sha256:1a5ee18e3a8d766075ce9314ed1cb695414bae67df6a4b0805f5137d93d6f1cb"}, ] [[package]] @@ -718,15 +718,15 @@ files = [ [[package]] name = "edt" -version = "2.3.2" +version = "2.4.0" requires_python = ">=3.7,<4" summary = "Multi-Label Anisotropic Euclidean Distance Transform 3D" dependencies = [ "numpy", ] files = [ - {file = "edt-2.3.2-cp310-cp310-win_amd64.whl", hash = "sha256:2d22e7fe48c66159bae3570000ff4dfe6972c543a2cab3348b5ce0dfeecfb26f"}, - {file = "edt-2.3.2.tar.gz", hash = "sha256:c975c5b2591e149dfc84350c508e37792ad75fc52746d4eb1b91e21f3a4f4a1f"}, + {file = "edt-2.4.0-cp310-cp310-win_amd64.whl", hash = "sha256:5f2b4f629f70a589aa5366bf5da1c0ea8bcb6219d92a35a3c52e4235435739a0"}, + {file = "edt-2.4.0.tar.gz", hash = "sha256:1c0bd88ab81a22cf01d0b53d6a0b584e56301a14658318a9b41bd636fc5e03cf"}, ] [[package]] @@ -741,12 +741,12 @@ files = [ [[package]] name = "elementpath" -version = "4.2.1" +version = "4.3.0" requires_python = ">=3.8" summary = "XPath 1.0/2.0/3.0/3.1 parsers and selectors for ElementTree and lxml" files = [ - {file = "elementpath-4.2.1-py3-none-any.whl", hash = "sha256:bbb05220460fc5ac6c3687a0f70870a80e457c61d1c547e1430bac931aa2fe0a"}, - {file = "elementpath-4.2.1.tar.gz", hash = "sha256:2afd3839732b60854946928f413d6ae869d0a2071c6fcfd5d2cf8937688e0b24"}, + {file = "elementpath-4.3.0-py3-none-any.whl", hash = "sha256:ecc885f2bb5bd5322fd68ace071f134a8fabf05f0019d77c638b906b844f6593"}, + {file = "elementpath-4.3.0.tar.gz", hash = "sha256:8d25db9150f5a6aa978c9f58e607fcd5ab6e6e3017140563439a9884ab1eb304"}, ] [[package]] @@ -855,13 +855,13 @@ files = [ [[package]] name = "fonttools" -version = "4.48.1" +version = "4.49.0" requires_python = ">=3.8" summary = "Tools to manipulate font files" files = [ - {file = "fonttools-4.48.1-cp310-cp310-win_amd64.whl", hash = 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"Python XML Binding" dependencies = [ "typing-extensions", ] files = [ - {file = "xsdata-24.1-py3-none-any.whl", hash = "sha256:314eba1e50219e3393fa3814f51b426646ae0bb9a416ecc5b6d93bcb08e88416"}, - {file = "xsdata-24.1.tar.gz", hash = "sha256:e36fc8b4624bbbaf2d34d0857c6d78ede99ec1d3240cc7dd50546177fbb52442"}, + {file = "xsdata-24.2.1-py3-none-any.whl", hash = "sha256:b5fa19482a059a58dd0f6a237d7a1dee742f7acc5267b51faa7a4d1830603e41"}, + {file = "xsdata-24.2.1.tar.gz", hash = "sha256:4630515935eb23a43942c4c2c4596e6ee11fab6223850380155b4f29d65d67c1"}, ] [[package]] diff --git a/requirements/windows/requirements.txt b/requirements/windows/requirements.txt index ac6e125a3..e1a14a6c1 100644 --- a/requirements/windows/requirements.txt +++ b/requirements/windows/requirements.txt @@ -9,7 +9,7 @@ anndata==0.9.2 annotated-types==0.6.0 ansicon==1.89.0 antlr4-python3-runtime==4.9.3 -anyio==4.2.0 +anyio==4.3.0 arrow==1.3.0 asciitree==0.3.3 astropy==5.2.2 @@ -21,12 +21,12 @@ beautifulsoup4==4.12.3 bfio==2.3.0 blessed==1.20.0 blinker==1.7.0 -boto3==1.34.42 -botocore==1.34.42 +boto3==1.34.48 +botocore==1.34.48 certifi==2024.2.2 charset-normalizer==3.3.2 click==8.1.7 -cliff==4.5.0 +cliff==4.6.0 cloudpickle==3.0.0 cmaes==0.10.0 cmd2==2.4.3 @@ -40,9 +40,9 @@ dateutils==0.6.12 deepdiff==6.7.1 distributed==2023.5.0 docker==7.0.0 -edt==2.3.2 +edt==2.4.0 einops==0.7.0 -elementpath==4.2.1 +elementpath==4.3.0 entrypoints==0.4 exceptiongroup==1.2.0 fastapi==0.109.2 @@ -50,11 +50,11 @@ fasteners==0.19 filelock==3.13.1 fire==0.5.0 Flask==3.0.2 -fonttools==4.48.1 +fonttools==4.49.0 frozenlist==1.4.1 fsspec==2024.2.0 gitdb==4.0.11 -gitpython==3.1.41 +gitpython==3.1.42 greenlet==3.0.3 h11==0.14.0 h5py==3.10.0 @@ -83,10 +83,10 @@ Mako==1.3.2 markdown==3.5.2 markdown-it-py==3.0.0 MarkupSafe==2.1.5 -matplotlib==3.7.4 +matplotlib==3.7.5 mdurl==0.1.2 mlflow==2.10.2 -monai-weekly==1.4.dev2406 +monai-weekly==1.4.dev2407 mpmath==1.3.0 msgpack==1.0.7 multidict==6.0.5 @@ -94,7 +94,7 @@ natsort==8.4.0 networkx==3.1 numcodecs==0.12.1 numpy==1.24.4 -ome-types==0.4.5 +ome-types==0.5.0 ome-zarr==0.8.3 omegaconf==2.3.0 optuna==2.10.1 @@ -105,7 +105,7 @@ pandas==1.5.3 partd==1.4.1 pbr==6.0.0 pillow==10.2.0 -PrettyTable==3.9.0 +PrettyTable==3.10.0 protobuf==3.20.1 psutil==5.9.8 pyarrow==10.0.1 @@ -149,13 +149,13 @@ sqlalchemy==2.0.27 sqlparse==0.4.4 starlette==0.36.3 starsessions==1.3.0 -stevedore==5.1.0 +stevedore==5.2.0 sympy==1.12 tblib==3.0.0 termcolor==2.4.0 threadpoolctl==3.3.0 tifffile==2023.7.10 -timm==0.9.12 +timm==0.9.16 toolz==0.12.1 torch==2.0.1 torchmetrics==1.3.1 @@ -165,7 +165,7 @@ tqdm==4.66.2 traitlets==5.14.1 types-python-dateutil==2.8.19.20240106 typing-extensions==4.9.0 -universal-pathlib==0.2.0 +universal-pathlib==0.2.1 urllib3==2.0.7 uvicorn==0.27.1 waitress==2.1.2 @@ -175,8 +175,8 @@ websockets==12.0 Werkzeug==3.0.1 wrapt==1.16.0 xarray==2023.1.0 -xmlschema==3.0.1 -xsdata==24.1 +xmlschema==3.0.2 +xsdata==24.2.1 yarl==1.9.4 zarr==2.16.1 zict==3.0.0 diff --git a/requirements/windows/spharm-requirements.txt b/requirements/windows/spharm-requirements.txt index 2698b2123..83408553f 100644 --- a/requirements/windows/spharm-requirements.txt +++ b/requirements/windows/spharm-requirements.txt @@ -13,7 +13,7 @@ anndata==0.9.2 annotated-types==0.6.0 ansicon==1.89.0 antlr4-python3-runtime==4.9.3 -anyio==4.2.0 +anyio==4.3.0 arrow==1.3.0 asciitree==0.3.3 astropy==5.2.2 @@ -30,7 +30,7 @@ botocore==1.27.59 certifi==2024.2.2 charset-normalizer==3.3.2 click==8.1.7 -cliff==4.5.0 +cliff==4.6.0 cloudpickle==3.0.0 cmaes==0.10.0 cmd2==2.4.3 @@ -44,9 +44,9 @@ dateutils==0.6.12 deepdiff==6.7.1 distributed==2023.5.0 docker==7.0.0 -edt==2.3.2 +edt==2.4.0 einops==0.7.0 -elementpath==4.2.1 +elementpath==4.3.0 entrypoints==0.4 exceptiongroup==1.2.0 fastapi==0.109.2 @@ -54,11 +54,11 @@ fasteners==0.19 filelock==3.13.1 fire==0.5.0 Flask==3.0.2 -fonttools==4.48.1 +fonttools==4.49.0 frozenlist==1.4.1 fsspec==2023.3.0 gitdb==4.0.11 -gitpython==3.1.41 +gitpython==3.1.42 greenlet==3.0.3 h11==0.14.0 h5py==3.10.0 @@ -87,10 +87,10 @@ Mako==1.3.2 markdown==3.5.2 markdown-it-py==3.0.0 MarkupSafe==2.1.5 -matplotlib==3.7.4 +matplotlib==3.7.5 mdurl==0.1.2 mlflow==2.10.2 -monai-weekly==1.4.dev2406 +monai-weekly==1.4.dev2407 mpmath==1.3.0 msgpack==1.0.7 multidict==6.0.5 @@ -98,7 +98,7 @@ natsort==8.4.0 networkx==3.1 numcodecs==0.12.1 numpy==1.24.4 -ome-types==0.4.5 +ome-types==0.5.0 ome-zarr==0.8.3 omegaconf==2.3.0 optuna==2.10.1 @@ -110,8 +110,8 @@ partd==1.4.1 pbr==6.0.0 pillow==10.2.0 platformdirs==4.2.0 -pooch==1.8.0 -PrettyTable==3.9.0 +pooch==1.8.1 +PrettyTable==3.10.0 protobuf==3.20.1 psutil==5.9.8 pyarrow==10.0.1 @@ -125,7 +125,7 @@ pyparsing==3.1.1 pyperclip==1.8.2 pyreadline3==3.4.1 pyrootutils==1.0.4 -pyshtools==4.11.10 +pyshtools==4.10.3 python-dateutil==2.8.2 python-dotenv==1.0.1 python-editor==1.0.4 @@ -156,13 +156,13 @@ sqlalchemy==2.0.27 sqlparse==0.4.4 starlette==0.36.3 starsessions==1.3.0 -stevedore==5.1.0 +stevedore==5.2.0 sympy==1.12 tblib==3.0.0 termcolor==2.4.0 threadpoolctl==3.3.0 tifffile==2023.7.10 -timm==0.9.12 +timm==0.9.16 toolz==0.12.1 torch==2.0.1 torchmetrics==1.3.1 @@ -172,7 +172,7 @@ tqdm==4.66.2 traitlets==5.14.1 types-python-dateutil==2.8.19.20240106 typing-extensions==4.9.0 -universal-pathlib==0.2.0 +universal-pathlib==0.2.1 urllib3==1.26.18 uvicorn==0.27.1 vtk==9.3.0 @@ -183,8 +183,8 @@ websockets==12.0 Werkzeug==3.0.1 wrapt==1.16.0 xarray==2023.1.0 -xmlschema==3.0.1 -xsdata==24.1 +xmlschema==3.0.2 +xsdata==24.2.1 yarl==1.9.4 zarr==2.16.1 zict==3.0.0 diff --git a/requirements/windows/test-requirements.txt b/requirements/windows/test-requirements.txt index 1bf95550a..a76a47919 100644 --- a/requirements/windows/test-requirements.txt +++ b/requirements/windows/test-requirements.txt @@ -13,7 +13,7 @@ anndata==0.9.2 annotated-types==0.6.0 ansicon==1.89.0 antlr4-python3-runtime==4.9.3 -anyio==4.2.0 +anyio==4.3.0 arrow==1.3.0 asciitree==0.3.3 astropy==5.2.2 @@ -31,14 +31,14 @@ botocore==1.27.59 certifi==2024.2.2 charset-normalizer==3.3.2 click==8.1.7 -cliff==4.5.0 +cliff==4.6.0 cloudpickle==3.0.0 cmaes==0.10.0 cmd2==2.4.3 colorama==0.4.6 colorlog==6.8.2 contourpy==1.1.1 -coverage==7.4.1 +coverage==7.4.2 croniter==1.4.1 cycler==0.12.1 dask==2023.5.0 @@ -48,9 +48,9 @@ Deprecated==1.2.14 distributed==2023.5.0 docker==7.0.0 e3nn==0.5.1 -edt==2.3.2 +edt==2.4.0 einops==0.7.0 -elementpath==4.2.1 +elementpath==4.3.0 entrypoints==0.4 escnn==1.0.11 exceptiongroup==1.2.0 @@ -59,13 +59,13 @@ fasteners==0.19 filelock==3.13.1 fire==0.5.0 Flask==3.0.2 -fonttools==4.48.1 +fonttools==4.49.0 frozenlist==1.4.1 fsspec==2023.3.0 -future==0.18.3 +future==1.0.0 geomloss==0.2.6 gitdb==4.0.11 -gitpython==3.1.41 +gitpython==3.1.42 gorilla==0.4.0 greenlet==3.0.3 h11==0.14.0 @@ -98,10 +98,10 @@ Mako==1.3.2 markdown==3.5.2 markdown-it-py==3.0.0 MarkupSafe==2.1.5 -matplotlib==3.7.4 +matplotlib==3.7.5 mdurl==0.1.2 mlflow==2.10.2 -monai-weekly==1.4.dev2406 +monai-weekly==1.4.dev2407 mpmath==1.3.0 msgpack==1.0.7 multidict==6.0.5 @@ -111,7 +111,7 @@ nibabel==5.2.0 Ninja==1.11.1.1 numcodecs==0.12.1 numpy==1.24.4 -ome-types==0.4.5 +ome-types==0.5.0 ome-zarr==0.8.3 omegaconf==2.3.0 opt-einsum==3.3.0 @@ -127,8 +127,8 @@ pillow==10.2.0 platformdirs==4.2.0 pluggy==1.4.0 point-cloud-utils==0.30.4 -pooch==1.8.0 -PrettyTable==3.9.0 +pooch==1.8.1 +PrettyTable==3.10.0 protobuf==3.20.1 psutil==5.9.8 py3nj==0.1.2 @@ -145,7 +145,7 @@ pyparsing==3.1.1 pyperclip==1.8.2 pyreadline3==3.4.1 pyrootutils==1.0.4 -pyshtools==4.11.10 +pyshtools==4.10.3 pytest==7.4.4 pytest-cov==4.1.0 python-dateutil==2.8.2 @@ -180,18 +180,18 @@ sqlalchemy==2.0.27 sqlparse==0.4.4 starlette==0.36.3 starsessions==1.3.0 -stevedore==5.1.0 +stevedore==5.2.0 sympy==1.12 tblib==3.0.0 termcolor==2.4.0 threadpoolctl==3.3.0 tifffile==2023.7.10 -timm==0.9.12 +timm==0.9.16 tomli==2.0.1 toolz==0.12.1 torch==2.0.1 -torch-geometric==2.4.0 -torchio==0.19.5 +torch-geometric==2.5.0 +torchio==0.19.6 torchmetrics==1.3.1 torchserve==0.9.0 torchvision==0.15.2 @@ -201,7 +201,7 @@ traitlets==5.14.1 typer==0.9.0 types-python-dateutil==2.8.19.20240106 typing-extensions==4.9.0 -universal-pathlib==0.2.0 +universal-pathlib==0.2.1 urllib3==1.26.18 uvicorn==0.27.1 vtk==9.3.0 @@ -213,8 +213,8 @@ Werkzeug==3.0.1 wheel==0.42.0 wrapt==1.16.0 xarray==2023.1.0 -xmlschema==3.0.1 -xsdata==24.1 +xmlschema==3.0.2 +xsdata==24.2.1 yarl==1.9.4 zarr==2.16.1 zict==3.0.0 diff --git a/requirements/windows/torchserve-requirements.txt b/requirements/windows/torchserve-requirements.txt index cdc775fdc..404b6b373 100644 --- a/requirements/windows/torchserve-requirements.txt +++ b/requirements/windows/torchserve-requirements.txt @@ -11,7 +11,7 @@ anndata==0.9.2 annotated-types==0.6.0 ansicon==1.89.0 antlr4-python3-runtime==4.9.3 -anyio==4.2.0 +anyio==4.3.0 arrow==1.3.0 asciitree==0.3.3 astropy==5.2.2 @@ -28,7 +28,7 @@ botocore==1.27.59 certifi==2024.2.2 charset-normalizer==3.3.2 click==8.1.7 -cliff==4.5.0 +cliff==4.6.0 cloudpickle==3.0.0 cmaes==0.10.0 cmd2==2.4.3 @@ -42,9 +42,9 @@ dateutils==0.6.12 deepdiff==6.7.1 distributed==2023.5.0 docker==7.0.0 -edt==2.3.2 +edt==2.4.0 einops==0.7.0 -elementpath==4.2.1 +elementpath==4.3.0 entrypoints==0.4 exceptiongroup==1.2.0 fastapi==0.109.2 @@ -52,11 +52,11 @@ fasteners==0.19 filelock==3.13.1 fire==0.5.0 Flask==3.0.2 -fonttools==4.48.1 +fonttools==4.49.0 frozenlist==1.4.1 fsspec==2023.3.0 gitdb==4.0.11 -gitpython==3.1.41 +gitpython==3.1.42 gorilla==0.4.0 greenlet==3.0.3 h11==0.14.0 @@ -86,10 +86,10 @@ Mako==1.3.2 markdown==3.5.2 markdown-it-py==3.0.0 MarkupSafe==2.1.5 -matplotlib==3.7.4 +matplotlib==3.7.5 mdurl==0.1.2 mlflow==2.10.2 -monai-weekly==1.4.dev2406 +monai-weekly==1.4.dev2407 mpmath==1.3.0 msgpack==1.0.7 multidict==6.0.5 @@ -97,7 +97,7 @@ natsort==8.4.0 networkx==3.1 numcodecs==0.12.1 numpy==1.24.4 -ome-types==0.4.5 +ome-types==0.5.0 ome-zarr==0.8.3 omegaconf==2.3.0 optuna==2.10.1 @@ -108,7 +108,7 @@ pandas==1.5.3 partd==1.4.1 pbr==6.0.0 pillow==10.2.0 -PrettyTable==3.9.0 +PrettyTable==3.10.0 protobuf==3.20.1 psutil==5.9.8 pyarrow==10.0.1 @@ -152,13 +152,13 @@ sqlalchemy==2.0.27 sqlparse==0.4.4 starlette==0.36.3 starsessions==1.3.0 -stevedore==5.1.0 +stevedore==5.2.0 sympy==1.12 tblib==3.0.0 termcolor==2.4.0 threadpoolctl==3.3.0 tifffile==2023.7.10 -timm==0.9.12 +timm==0.9.16 toolz==0.12.1 torch==2.0.1 torchmetrics==1.3.1 @@ -169,7 +169,7 @@ tqdm==4.66.2 traitlets==5.14.1 types-python-dateutil==2.8.19.20240106 typing-extensions==4.9.0 -universal-pathlib==0.2.0 +universal-pathlib==0.2.1 urllib3==1.26.18 uvicorn==0.27.1 waitress==2.1.2 @@ -180,8 +180,8 @@ Werkzeug==3.0.1 wheel==0.42.0 wrapt==1.16.0 xarray==2023.1.0 -xmlschema==3.0.1 -xsdata==24.1 +xmlschema==3.0.2 +xsdata==24.2.1 yarl==1.9.4 zarr==2.16.1 zict==3.0.0