More about configuration file

1. Full single cell image dataset

No changes need to be made in the configuration file if you downloaded the full single cell image dataset.

2. Full single cell segmentation image dataset

These are the changes that need to be made in case you skipped downloading the raw images and only have the segmentations available:

data:
    cell:
        alias: MEM
        channel: membrane_segmentation
        color: '#F200FF'
    nucleus:
        alias: NUC
        channel: dna_segmentation
        color: '#3AADA7'
    structure:
        alias: STR
        channel: struct_segmentation_roof
        color: '#000000'