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Welcome to the cvapipe_analysis wiki!

The goals of this repo are:

1. Reproduce results shown in the paper Integrated intracellular organization and its variations in human iPS cells. This can be done in 3 levels

1.1. All results: this requires downloading the full single cell images dataset. You will need 8Tb of space in disk to store raw and segmented images. Click here if you are interested in this.

1.2. Results that depend on segmentation only: most results require only segmented images. In that case 100Gb of space in disk is required. Click here if you are interested in this.

2. Test mode: run cvapipe_analysis in a small set of cells.

Click here if you are interested in this.

3. Apply the concepts of shape space and PILR used in the paper to custom data.

Click here if you are interested in this.

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Welcome to the cvapipe_analysis wiki!

The goal of this repo is to enable reproduction of results shown in the paper Integrated intracellular organization and its variations in human iPS cells.

This can be done the following ways:

1. Title for this section???

• All results: this requires downloading the full single cell images dataset. You will need 8Tb of space in disk to store raw and segmented images. Click here if you are interested in this.

• Results that depend on segmentation only: most results require only segmented images. In that case 100Gb of space in disk is required. Click here if you are interested in this.

2. Test mode: run cvapipe_analysis in a small set of cells

Jump to this section

3. Apply the concepts of shape space and PILR used in the paper to custom data

Jump to this section