From 5ec15e38d05cc29e8e81841e9c2f7d59d7a45ebd Mon Sep 17 00:00:00 2001 From: jashapiro Date: Thu, 3 Mar 2022 18:49:46 +0000 Subject: [PATCH] Live and rendered notebooks --- RNA-seq/01-qc_trim_quant.nb.html | 2933 +++++++++++++++- RNA-seq/02-gastric_cancer_tximeta.nb.html | 2773 ++++++++++++++- RNA-seq/03-gastric_cancer_exploratory.nb.html | 2733 ++++++++++++++- RNA-seq/04-nb_cell_line_tximeta.nb.html | 2686 ++++++++++++++- RNA-seq/05-nb_cell_line_DESeq2.nb.html | 2772 ++++++++++++++- RNA-seq/06-openpbta_heatmap.nb.html | 2820 ++++++++++++++- .../01-intro_to_base_R.nb.html | 2994 +++++++++++++++- .../02-intro_to_ggplot2-live.Rmd | 65 +- .../02-intro_to_ggplot2.nb.html | 2882 +++++++++++++++- .../03-intro_to_tidyverse.nb.html | 2969 +++++++++++++++- scRNA-seq/01-scRNA_quant_qc.nb.html | 2900 +++++++++++++++- scRNA-seq/02-filtering_scRNA-live.Rmd | 6 +- scRNA-seq/02-filtering_scRNA.nb.html | 2948 +++++++++++++++- scRNA-seq/03-normalizing_scRNA.nb.html | 2766 ++++++++++++++- .../04-dimension_reduction_scRNA-live.Rmd | 5 +- .../04-dimension_reduction_scRNA.nb.html | 3039 ++++++++++++++++- scRNA-seq/05-clustering_markers_scRNA.nb.html | 2965 +++++++++++++++- .../06-overrepresentation_analysis-live.Rmd | 2 +- .../06-overrepresentation_analysis.nb.html | 2939 +++++++++++++++- .../07-gene_set_enrichment_analysis.nb.html | 2897 +++++++++++++++- 20 files changed, 45086 insertions(+), 1008 deletions(-) diff --git a/RNA-seq/01-qc_trim_quant.nb.html b/RNA-seq/01-qc_trim_quant.nb.html index d0b161b7..53b96151 100644 --- a/RNA-seq/01-qc_trim_quant.nb.html +++ b/RNA-seq/01-qc_trim_quant.nb.html @@ -15,13 +15,49 @@ Introduction to bulk RNA-seq data processing - - + + - - - - + + + + - - - - - - - - - + + + + + + + + + + + + - - - - - - - - - + + + + + + + + + + + + - - - - - - - - - + + + + + + + + + + + + - - - - - - - - - + + + + + + + + + + + + - - - - - - - - - + + + + + + + + + + + + - - - - - - - - - + + + + + + + + + + + + - - - - - - - - - + + + + + + + + + + + + - - - - - - - - - + + + + + + + + + + + + - - - - - - - - - + + + + + + + + + + + + - - - - - - - - - + + + + + + + + + + + + - - - - - - - - - + + + + + + + + + + + + - - - - - - - - - + + + + + + + + + + + + - - - - - - - - - + + + + + + + + + + + + - - - - - - - - - + + + + + + + + + + + + - - - - - - - - - + + + + + + + + + + + + - - - - - - - - - + + + + + + + + +