Skip to content

Commit

Permalink
Merge pull request #797 from AlexsLemonade/jashapiro/setup-nb
Browse files Browse the repository at this point in the history
Add instructions for copying notebook file to magic file location
  • Loading branch information
jashapiro authored Aug 12, 2024
2 parents a56e086 + 5147ee6 commit 8718d22
Showing 1 changed file with 1 addition and 0 deletions.
1 change: 1 addition & 0 deletions RNA-seq/setup/magic-files.md
Original file line number Diff line number Diff line change
Expand Up @@ -12,6 +12,7 @@ Files are listed below by the notebook that produces them:
- `data/gastric-cancer/txi/gastric-cancer_tximeta.rds`
- `setup/ref_notebooks/04-nb_cell_line_tximeta.Rmd` (participants create their own notebook for this step)
- `data/NB-cell/txi/NB-cell_tximeta.rds`
- For convenience, we should also copy `setup/ref_notebooks/04-nb_cell_line_tximeta.Rmd` to `/shared/data/training-data/<date>/RNA-seq/nb_cell_tximeta.Rmd`, to match the activity instructions for notebook name.
- `05-nb_cell_line_DESeq2.Rmd`
- `results/NB-cell/NB-cell_DESeq_amplified_v_nonamplified.rds`
- `results/NB-cell/NB-cell_DESeq_amplified_v_nonamplified_results.tsv`
Expand Down

0 comments on commit 8718d22

Please sign in to comment.