.travis.yml

language: python
python:
  - "3.6"
  - "3.7"
  - "3.8"
before_install:
  - sudo apt-get -qq update
  - pip install -U pip
  - export PYTHONPATH=$PYTHONPATH:$(pwd)
  - python setup.py install
install:
  - sudo apt-get update -y
  - sudo apt-get install build-essential curl file git
  - wget https://repo.continuum.io/miniconda/Miniconda3-latest-Linux-x86_64.sh -O miniconda.sh && bash miniconda.sh -b -p $HOME/miniconda
  - export PATH="$HOME/miniconda/bin:$PATH"
  - source "$HOME/miniconda/etc/profile.d/conda.sh"
  - hash -r
  - conda config --set always_yes yes --set changeps1 no
  - conda update -q conda
  - conda info -a
  - conda config --add channels defaults
  - conda config --add channels bioconda
  - conda config --add channels conda-forge
  - conda create -n test
  - conda activate test
#  - conda install blast busco=4.0.5 diamond transdecoder ujson pandas yaml chardet pyyaml numpy joblib
  - conda install blast busco=4.0.5 diamond ujson pandas yaml chardet pyyaml numpy joblib
  - python3 -m pip install -e . --user
  - python setup.py install
  - configure_busco.sh "eukaryota_odb10"
branches:
  except:
  - remodeling
script:
  - pip install coverage #==4.5.4 
  - pip install biopython==1.77
  - py.test -n 3 -v --cov EUKulele --cov-report term-missing
  #- travis_wait 25 py.test tests/code/test_mags_2.py --doctest-modules -v --cov EUKulele --cov-report term-missing
  #- py.test tests/code/test_mets.py --doctest-modules -v --cov EUKulele --cov-report term-missing
after_success:
  - coveralls