setup.py

import os
import sys
import warnings

import numpy
from numpy.distutils.core import Extension, setup
from setuptools import find_packages


def read(rel_path):
    """Function read() was copied from setup.py in Pip package."""
    here = os.path.abspath(os.path.dirname(__file__))
    # intentionally *not* adding an encoding option to open, See:
    #   https://github.com/pypa/virtualenv/issues/201#issuecomment-3145690
    with open(os.path.join(here, rel_path), "r") as fp:
        return fp.read()


packages = find_packages()  # exclude=["RMextract.LOFAR_TOOLS"])
ext_modules = []

ext_modules.append(
    Extension(
        "RMextract.EMM._EMM_Model",
        sources=[
            os.path.join("RMextract", "EMM", f)
            for f in ("EMM_Model.cc", "GeomagnetismLibrary.c", "EMM_Model_wrap.cc")
        ],
        extra_compile_args=["-Wno-format-security"],
    )
)

ext_modules.append(
    Extension(
        "RMextract.pyiri._iri",
        sources=[
            os.path.join("RMextract", "pyiri", f)
            for f in (
                "iri.pyf",
                "cira.for",
                "igrf.for",
                "iridreg.for",
                "iriflip.for",
                "irifun.for",
                "irisub.for",
                "iritec.for",
                "iriget.for",
            )
        ],
        include_dirs=[numpy.get_include()],
    )
)

ext_modules.append(
    Extension(
        "RMextract.pyiriplas._iriplas",
        sources=[
            os.path.join("RMextract", "pyiriplas", f)
            for f in (
                "iriplas.pyf",
                "igrf.for",
                "irif2019.for",
                "iriplas_main.for",
                "Iris2017.for",
                "indx2017.for",
            )
        ],
        include_dirs=[numpy.get_include()],
    )
)

# For backward compatibility for those who (still) use `python setup.py` to
# install the optional LOFAR utilities.
if "--add-lofar-utils" in sys.argv:
    packages.append("RMextract.LOFAR_TOOLS")
    sys.argv.remove("--add-lofar-utils")
    warnings.warn(
        "Use of 'python setup.py install --add-lofar-utils' is deprecated. "
        "Use 'pip install RMextract[lofar-utils]' instead."
    )

setup(
    name="RMextract",
    version="0.4.4",
    url="https://github.com/lofar-astron/RMextract",
    project_urls={"Source": "https://github.com/lofar-astron/RMextract"},
    author="Maaijke Mevius",
    author_email="mevius@astron.nl",
    description="Extract TEC, vTEC, Earthmagnetic field and Rotation Measures from GPS "
                "and WMM data for radio interferometry observations",
    long_description=read("README.md"),
    long_description_content_type="text/markdown",
    maintainer="Marcel Loose",
    maintainer_email="loose@astron.nl",
    classifiers=[
        "Development Status :: 4 - Beta",
        "Intended Audience :: Science/Research",
        "License :: OSI Approved :: GNU General Public License v3 (GPLv3)",
        "Operating System :: POSIX :: Linux",
        "Programming Language :: Python",
        "Topic :: Scientific/Engineering :: Astronomy",
        "Topic :: Software Development :: Libraries :: Python Modules",
    ],
    ext_modules=ext_modules,
    packages=packages,
    install_requires=["numpy", "scipy", "astropy", "python-casacore", "PySocks"],
    extras_require={
        # Note that "lofar-utils" also depends on the python bindings to the LOFAR ParmDB.
        # Since these have never been published on PyPI, we cannot specify this dependency.
        "lofar-utils": ["losoto"]
    },
    entry_points={
        "console_scripts": [
            "createRMParmdb = RMextract.LOFAR_TOOLS.createRMParmdb:main [lofar-utils]",
            "createRMh5parm.py = RMextract.LOFAR_TOOLS.createRMh5parm:main [lofar-utils]",
            "download_IONEX.py = RMextract.LOFAR_TOOLS.download_IONEX:main [lofar-utils]",
        ]
    },
    package_data={
        "RMextract.EMM": ["*.COF"],
        # Add *.pyf files. These files are _not_ treated as source files by Numpy's setup(),
        # because, normally, they are (re)generated by f2py from the Fortran source files.
        # However, since these files needed to be tweaked a bit, they _must_ be treated as source
        # files now. So, we have to manually add them to the source distribution.
        "RMextract.pyiri": ["iri.pyf", "*.dat", "*.asc"],
        "RMextract.pyiriplas": ["iriplas.pyf", "*.dat", "*.asc", "kp*", "*.ASC"],
    },
)