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Agusabb / Bioinformatic_lines Public

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Bioinformatic_lines

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Contar_ocurrencia_AWK

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5 lines (1 loc) · 162 Bytes

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Bioinformatic_lines

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Contar_ocurrencia_AWK

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5 lines (1 loc) · 162 Bytes

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samtools view IGreenACFull.bam SL3.0ch11:2700083-2702516|awk ' BEGIN {count=0;} { if ($2==16 && $10 == "AAGTTATCAGTTGGAAGCCCT") count+=1} END {print count}'

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