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etl-helpers.js
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etl-helpers.js
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/*jshint -W003, -W097, -W117, -W026 */
'use strict';
var _ = require('underscore');
var moment = require('moment');
module.exports = (function () {
return {
getReportParams: function getReportParams(
reportName,
whereClause,
queryParams
) {
let whereParams = [];
// format dates to avoid timezone errors
queryParams.startDate = (
queryParams.startDate || new Date().toISOString().substring(0, 10)
).split('T')[0];
queryParams.endDate = (
queryParams.endDate || new Date().toISOString().substring(0, 10)
).split('T')[0];
queryParams.referenceDate = (
queryParams.referenceDate || new Date().toISOString().substring(0, 10)
).split('T')[0];
// format cohort filters
queryParams.startAge = queryParams.startAge || 0;
queryParams.endAge = queryParams.endAge || 150;
queryParams.gender = (queryParams.gender || 'M,F').split(',');
queryParams.genders = (queryParams.genders || 'M,F').split(',');
// resolve requested indicators parameter name
queryParams.requestIndicators = queryParams.indicators;
// format location TODO: Remove location ids on reports and params in order to avoid resolutions
var locations = [];
if (queryParams.locations) {
_.each(queryParams.locations.split(','), function (loc) {
locations.push(Number(loc));
});
queryParams.locations = locations;
}
// format locationUuids
var locationUuids = [];
if (queryParams.locationUuids) {
_.each(queryParams.locationUuids.split(','), function (loc) {
if (loc == '' || loc == 'undefined' || loc == undefined) {
console.log(loc);
} else {
locationUuids.push(String(loc));
}
});
if (locationUuids.length > 0) {
queryParams.locationUuids = locationUuids;
} else {
delete queryParams['locationUuids'];
}
}
// format programUuids
var programUuids = [];
if (queryParams.programUuids) {
_.each(queryParams.programUuids.split(','), function (program) {
programUuids.push(String(program));
});
queryParams.programUuids = programUuids || ['*'];
}
var stateUuids = [];
if (queryParams.stateUuids) {
_.each(queryParams.stateUuids.split(','), function (state) {
stateUuids.push(String(state));
});
queryParams.stateUuids = stateUuids || ['*'];
}
var providerUuids = [];
if (queryParams.providerUuids) {
_.each(queryParams.providerUuids.split(','), function (provider) {
if (
provider == '' ||
provider == 'undefined' ||
provider == undefined
) {
console.log(provider);
} else {
providerUuids.push(String(provider));
}
});
if (providerUuids.length > 0) {
queryParams.providerUuids = providerUuids;
} else {
delete queryParams['providerUuids'];
}
}
// format conceptUuid
var conceptUuids = [];
if (queryParams.conceptUuids) {
_.each(queryParams.conceptUuids.split(','), function (state) {
conceptUuids.push(String(state));
});
queryParams.conceptUuids = conceptUuids;
}
//
for (let filter of whereClause) {
whereParams.push({
name: filter,
value: queryParams[filter]
});
}
var reportParams = {
reportName: reportName,
whereParams: whereParams,
countBy: queryParams.countBy || 'num_persons',
groupBy: queryParams.groupBy || 'groupByLocation',
offset: queryParams.startIndex,
limit: queryParams.limit,
requestIndicators: queryParams.indicators,
requestParams: queryParams
};
return reportParams;
},
getSortOrder: function getSortOrder(param) {
if (!param) return null;
var parts;
var order = [];
_.each(param.split(','), function (order_by) {
parts = order_by.split('|');
order.push({
column: parts[0],
asc: parts[1].toLowerCase() === 'asc'
});
});
return order;
},
getFilters: function getFilters(filters) {
var s = '';
var vals = [],
column;
_.each(filters, function (item) {
column = item.column;
for (var f in item.filters) {
if (
item.filters[f] === undefined ||
item.filters[f] === null ||
item.filters[f] === ''
)
continue;
console.log(item.filters[f]);
s += column;
if (f === 'start') s += ' >= ?';
else if (f === 'end') s += ' <= ?';
else s += ' like ?';
vals.push(item.filters[f]);
s += ' AND ';
}
});
s = s.substring(0, s.length - 5);
if (s !== '') s = '(' + s + ')';
console.log(s);
console.log(vals);
return {
s: s,
vals: vals
};
},
getConceptName: function getConceptName(code) {
if (code === null || code === undefined) return '';
var concepts = {
221: 'RHEUMATIC HEART DISEASE',
9842: 'DUCTAL CELL CARCINOMA',
664: 'NEGATIVE',
703: 'POSITIVE',
1115: 'NORMAL',
1116: 'ABNORMAL',
1118: 'NOT DONE',
1136: 'PULMONARY EFFUSION',
1137: 'MILIARY CHANGES',
1138: 'INDETERMINATE',
1304: 'POOR SAMPLE QUALITY',
1530: 'CARDIAC ARRHYTHMIA',
1531: 'ATRIAL FIBRILLATION',
1532: 'LEFT VENTRICULAR HYPERTROPHY',
1533: 'RIGHT VENTRICULAR HYPERTROPHY',
1538: 'DILATED CARDIOMYOPATHY',
1539: 'PERICARDIAL EFFUSION',
1540: 'MURAL THROMBI',
1541: 'PULMONARY HYPERTENSION',
1542: 'VENTRICULAR SEPTAL DEFECT',
5158: 'EVIDENCE OF CARDIAC ENLARGEMENT',
5622: 'OTHER NON-CODED',
6049: 'INFILTRATE',
6050: 'DIFFUSE NON-MILIARY CHANGES',
6052: 'CAVITARY LESION',
1098: 'MONTHLY',
1099: 'WEEKLY',
1639: 'MORNING',
1640: 'NOON',
1641: 'AFTERNOON',
1730: 'EVENING',
1888: 'TWICE A DAY',
1889: 'THREE TIMES A DAY',
1890: 'FOUR TIMES A DAY',
1891: 'ONCE A DAY',
1899: 'NUMBER OF MILLIGRAM',
2176: 'EVERY NIGHT',
2178: 'STAT',
7682: 'ONCE EVERY TWO WEEKS',
7772: 'AS NEEDED',
8909: 'ONCE A WEEK',
8927: 'ONCE',
9933: 'ONCE EVERY THREE WEEKS',
10091: 'FIVE TIMES DAILY',
10092: 'TWICE A WEEK',
10093: 'THREE TIMES A WEEK',
10094: 'FOUR TIMES A WEEK',
1256: 'START',
1257: 'CONTINUE',
1259: 'CHANGE',
1260: 'STOP',
2261: 'METFORMIN',
2257: 'GLIBENCLAMIDE',
2254: '70% NPH INSULIN WITH 30% REGULAR INSULIN',
2256: 'INSULIN LISPRO',
2255: 'INSULIN NPH',
2258: 'GLICLAZIDE',
2259: 'CHLORPROPAMIDE',
2260: 'GLIMEPIRIDE',
279: 'INSULIN, LENTE',
282: 'INSULIN, REGULAR',
2270: 'PIOGLITAZONE',
2271: 'ROSIGLITAZONE',
2279: 'GLIBENCLAMIDE AND METFORMIN',
1107: 'NONE',
7281: 'NEW DM PATIENT',
7282: 'KNOWN DM PATIENT',
7285: 'NEW HTN PATIENT',
7286: 'KNOWN HTN PATIENT',
1878: 'STROKE',
8076: 'T.I.A',
1456: 'HEART FAILURE',
8077: 'ISCHEMIC H.D ',
821: 'PERIPHERAL NEUROPATHY',
8084: 'DIABETIC RETINOPATHY',
8085: 'GASTROPATHY',
8086: 'AUTONOMIC NEUROPATHY',
70: 'CATARACTS',
1885: 'KIDNEY FAILURE',
6730: 'VISUAL IMPAIREMENT',
// ONCOLOGY CONCEPTS
8480: 'LENALIDOMIDE',
6555: 'MULTIPLE MYELOMA',
6902: 'BONE MARROW ASPIRATION',
10206: 'DURIE-SALMON SYSTEM',
9851: 'STAGE 0',
9852: 'STAGE I',
9853: 'STAGE IA',
9854: 'STAGE IB',
9855: 'STAGE IC',
9856: 'STAGE II',
9857: 'STAGE IIA',
9858: 'STAGE IIB',
9859: 'STAGE IIC',
9860: 'STAGE III',
9861: 'STAGE IIIA',
9862: 'STAGE IIIB',
9863: 'STAGE IIIC',
9864: 'STAGE IV',
9865: 'STAGE IVA',
9867: 'STAGE IVC',
9866: 'STAGE IVB',
6575: 'CHEMOTHERAPY',
10078: 'INTRATHECAL, DRUG ROUTE',
8479: 'THALIDOMIDE',
6566: 'COMPLETE STAGING',
6536: 'GYNECOLOGIC CANCER TYPE',
7213: 'MELPHALAN',
6485: 'SARCOMA',
6537: 'CERVICAL CANCER',
9918: 'CHEMO MEDS',
8478: 'IMATINIB',
7217: 'PALLIATIVE TAMOXIFEN',
7203: 'CYCLOPHOSPHAMIDE',
7215: 'METHOTREXATE',
7223: 'FLUOROURACIL',
7198: 'HYDROXYDAUNORUBICIN (ADRIAMYCIN)',
491: 'PREDNISONE',
7199: 'BLEOMYCIN',
7218: 'VINBLASTINE',
7205: 'DACARBAZINE',
7212: '5FU / LEUCOVORIN',
8513: 'ANASTRAZOLE',
7202: 'CISPLATIN',
7209: 'ETOPOSIDE',
7197: 'ACTINOMYCIN D',
7219: 'VINCRISTINE',
8506: 'PACLITAXEL',
7210: 'GEMCITABINE (GEMZAR)',
8499: 'IFOSFAMIDE',
8492: 'CARBOPLATINUM',
8522: 'INTERFERON ALFA',
8510: 'CAPECITABINE',
8511: 'EPIRUBICIN',
9919: 'MESNA',
8518: 'LEUPROLIDE',
8516: 'BICALUTAMIDE',
8481: 'SORAFENIB',
7207: 'DEXAMETHASONE',
7204: 'CYTARABINE',
7201: 'CHLORAMBUCIL',
8519: 'ZOLADEX/GOSERELIN',
8507: 'TAXOTERE',
10139: 'OXALIPLATIN',
10140: 'ZOLEDRONIC ACID',
8515: 'LETROZOLE',
8514: 'EXEMESTANE',
8486: 'BORTEZOMIB',
1895: 'MEDICATION ADDED',
10198: 'OTHER MEDS GIVEN',
88: 'BABY ASA',
8598: 'VIT. B12 INJECTION',
8597: 'VIT D SUPPLEMETATION',
1195: 'ANTIBIOTICS',
8410: 'ANTICOAGULATION',
7458: 'IV FLUIDS',
9710: 'SICKLE CELL DRUGS',
7211: 'HYDROXYUREA',
257: 'FOLATE/FOLIC ACID',
784: 'PEN-V',
97: 'PALLUDRINE',
8723: 'ONCOLOGY TREATMENT PLAN',
7465: 'SURGERY',
8427: 'RADIATION THERAPY',
9626: 'HORMONE REPLACEMENT THERAPY',
10038: 'BIOLOGIC THERAPY',
10232: 'TARGETED THERAPY',
10039: 'OTHER ONCOLOGY TREATMENT PLAN',
10586: 'IN REMISSION',
8725: 'REASONS FOR SURGERY',
8428: 'CURATIVE CARE',
8724: 'PALLIATIVE CARE',
8727: 'DIAGNOSTIC',
2206: 'CHEMOTHERAPY INTENT',
9219: 'NEO ADJUVANT INTENT',
9218: 'ADJUVANT INTENT',
9220: 'SYMPTOM CONTROL',
9869: 'CHEMOTHERAPY PLAN',
6576: 'CHEMOTHERAPY REGIMEN MODIFICATION',
1190: 'CHEMOTHERAPY START DATE',
6643: 'CURRENT CHEMOTHERAPY CYCLE',
7463: 'DRUG ROUTE',
10079: 'INTRA OMMAYA',
7597: 'SUBCUTANEOUS INJECTION',
7581: 'INTRAMUSCULAR INJECTION',
7609: 'INTRARTERIAL INJECTION',
7447: 'ORAL ADMINISTRATION',
6042: 'DIAGNOSIS',
9728: 'DIAGNOSIS DATE',
9868: 'OVERALL CANCER STAGE GROUP',
7176: 'CANCER TYPE',
9847: 'NON-CANCER',
9841: 'BREAST CANCER TYPE',
6582: 'CANCER STAGE',
6504: 'DIAGNOSIS METHOD',
507: "KAPOSI'S SARCOMA",
6486: 'SOFT TISSUE SARCOMA',
6487: 'OSTEOGENIC SARCOMA',
6488: "EWING'S SARCOMA",
6489: 'RHABDOMYOSARCOMA',
6490: 'OTHER SARCOMA',
1065: 'YES',
9849: 'NEW CANCER PATIENT',
9850: 'CANCER RECURRENCE',
6484: 'SOLID CANCER',
7175: 'HEMATOLOGIC CANCER',
6529: 'THYROID CANCER',
6522: 'GASTRIC CANCER',
9636: 'ENDOMETRIAL CANCER',
9637: 'BONE OR SOFT TISSUE CANCER',
9638: 'ADRENOCORTICAL CARCINOMA',
9639: 'BRAIN CANCER',
9640: 'ACUTE LEUKEMIA',
6544: 'BREAST CANCER',
6545: 'INFLAMMATORY BREAST CANCER',
9846: 'OTHER SOLID CANCER TYPE',
6514: 'GENITOURINARY CANCER',
6520: 'GASTROINTESTINAL CANCER',
6528: 'HEAD AND NECK CANCER',
6551: 'LYMPHOMA CANCER TYPE',
6540: 'SKIN CANCER TYPE',
216: 'LEUKEMIA',
10129: 'NON SMALL CELL LUNG CANCER',
10130: 'SMALL CELL LUNG CANCER',
8424: 'RETINOBLASTOMA',
8425: 'NEUROBLASTOMA',
9845: 'LUNG CANCER',
6515: 'BLADDER CANCER',
6516: 'RENAL CELL CANCER',
6517: "WILM'S TUMOR",
6518: 'PROSTATE CANCER',
6519: 'TESTES CANCER',
6521: 'ESOPHAGEAL CANCER',
6523: 'PANCREATIC CANCER',
6524: 'CHOLANGIOCARCINOMA',
6525: 'COLON CANCER',
6526: 'RECTAL CANCER',
6527: 'ANAL CANCER',
6568: 'HEPATOCELLULAR CANCER',
6530: 'NASOPHARYNGEAL SQUAMOUS CELL CANCER',
6531: 'OROPHARYNGEAL SQUAMOUS CELL CANCER',
6532: 'HYPOPHARYNGEAL SQUAMOUS CELL CANCER',
6533: 'LARYNGEAL SQUAMOUS CELL CANCER',
6534: 'HEAD AND NECK SQUAMOUS CELL CANCER, SITE NOT SPECIFIED',
6535: 'POSTERIOR NASAL SPACE TUMOR',
6538: 'UTERINE CANCER',
6539: 'OVARIAN CANCER',
6553: "NON-HODGKIN'S LYMPHOMA",
6552: "HODGKIN'S LYMPHOMA",
8423: "BURKITT'S LYMPHOMA",
6541: 'SKIN SQUAMOUS CELL CANCER',
6542: 'BASAL CELL CANCER',
6543: 'MELANOMA',
7420: 'HIGH GRADE SQUAMOUS INTRAEPITHELIAL LESION',
7422: 'ADENOCARCINOMA',
7421: 'SQUAMOUS CELL CARCINOMA, NOT OTHERWISE SPECIFIED',
10131: 'LARGE CELL CARCINOMA',
10209: 'MIXED SQUAMOUS',
6547: 'CHRONIC MYELOGENOUS LEUKEMIA',
6548: 'CHRONIC LYMPHOCYTIC LEUKEMIA',
6549: 'ACUTE MYELOGENOUS LEUKEMIA',
6550: 'ACUTE LYMPHOCYTIC LEUKEMIA',
7469: 'ACETOWHITE LESION',
5245: 'PALLOR',
7470: 'PUNCTUATED CAPILLARIES',
9591: 'OYSTER WHITE LESION',
9592: 'BRIGHT WHITE LESION',
7293: 'ULCER',
6497: 'DYSFUNCTIONAL UTERINE BLEEDING',
7472: 'ATYPICAL BLOOD VESSELS',
9593: 'FRIABLE TISSUE',
6971: 'POSSIBLE',
11772: 'YELLOW STAINING LESION',
7417: 'ATYPICAL SQUAMOUS CELLS OF UNDETERMINED SIGNIFICANCE',
7418: 'ATYPICAL GLANDULAR CELLS OF UNDETERMINED SIGNIFICANCE',
7419: 'LOW GRADE SQUAMOUS INTRAEPITHELIAL LESION',
7420: 'HIGH GRADE SQUAMOUS INTRAEPITHELIAL LESION',
7421: 'SQUAMOUS CELL CARCINOMA, NOT OTHERWISE SPECIFIED',
10055: 'INVASIVE CANCER'
};
return concepts[code];
},
getARVNames: function getARVNames(str) {
if (
str === null ||
str === undefined ||
str === 'unknown' ||
str === '-1'
) {
return '';
}
var arvs = {
625: { mapped_to_ids: '625', name: 'STAVUDINE' },
628: { mapped_to_ids: '628', name: 'LAMIVUDINE' },
630: { mapped_to_ids: '628;797', name: 'ZIDOVUDINE AND LAMIVUDINE' },
631: { mapped_to_ids: '631', name: 'NEVIRAPINE' },
633: { mapped_to_ids: '633', name: 'EFAVIRENZ' },
635: { mapped_to_ids: '635', name: 'NELFINAVIR' },
749: { mapped_to_ids: '749', name: 'INDINAVIR' },
791: { mapped_to_ids: '791', name: 'EMTRICITABINE' },
792: {
mapped_to_ids: '625;628;631',
name: 'STAVUDINE LAMIVUDINE AND NEVIRAPINE'
},
794: { mapped_to_ids: '794', name: 'LOPINAVIR AND RITONAVIR' },
795: { mapped_to_ids: '795', name: 'RITONAVIR' },
796: { mapped_to_ids: '796', name: 'DIDANOSINE' },
797: { mapped_to_ids: '797', name: 'ZIDOVUDINE' },
802: { mapped_to_ids: '802', name: 'TENOFOVIR' },
814: { mapped_to_ids: '814', name: 'ABACAVIR' },
817: {
mapped_to_ids: '628;797;814',
name: 'ABACAVIR LAMIVUDINE AND ZIDOVUDINE'
},
1065: { mapped_to_ids: '1065', name: 'YES' },
1066: { mapped_to_ids: '1066', name: 'NO' },
1107: { mapped_to_ids: '1107', name: 'NONE' },
1400: { mapped_to_ids: '628;802', name: 'LAMIVUDINE AND TENOFOVIR' },
5424: { mapped_to_ids: '5424', name: 'OTHER ANTIRETROVIRAL DRUG' },
5811: { mapped_to_ids: '5811', name: 'UNKNOWN ANTIRETROVIRAL DRUG' },
6156: { mapped_to_ids: '6156', name: 'RALTEGRAVIR' },
6157: { mapped_to_ids: '6157', name: 'DARUNAVIR' },
6158: { mapped_to_ids: '6158', name: 'ETRAVIRINE' },
6159: { mapped_to_ids: '6159', name: 'ATAZANAVIR' },
6160: { mapped_to_ids: '795;6159', name: 'ATAZANAVIR AND RITONAVIR' },
6180: { mapped_to_ids: '791;802', name: 'EMTRICITABINE AND TENOFOVIR' },
6467: {
mapped_to_ids: '628;631;633',
name: 'NEVIRAPINE LAMIVUDINE AND ZIDOVUDINE'
},
6679: { mapped_to_ids: '628;814', name: 'ABACAVIR AND LAMIVUDINE' },
6964: {
mapped_to_ids: '628;633;802',
name: 'TENOFOVIR AND LAMIVUDINE AND EFAVIRENZ'
},
6965: { mapped_to_ids: '625;628', name: 'LAMIVUDINE AND STAVUDINE' },
9435: { mapped_to_ids: '9435', name: 'EVIPLERA' },
9759: { mapped_to_ids: '9759', name: 'DOLUTEGRAVIR' },
9026: { mapped_to_ids: '9026', name: 'LOPINAVIR' },
10090: { mapped_to_ids: '10090', name: 'RILPIVIRINE' },
12053: { mapped_to_ids: '12053', name: 'CABOTEGRAVIR AND RILPIVIRINE' }
};
var arvCodes = str.split(' ## ');
var arvNames = [];
var sortedArvCodes = arvCodes.sort().join(';');
var matchingName = _.find(arvs, function (arv) {
if (arv['mapped_to_ids'] === sortedArvCodes) {
return arv;
}
});
_.each(arvCodes, function (code) {
if (arvs[code]) {
arvNames.push(arvs[code].name);
} else {
arvNames.push(code);
}
});
return matchingName ? matchingName.name : arvNames.join(', ');
},
getContraceptiveMethod: function getContraceptiveMethod(str) {
if (str === null || str === undefined)
return { concept: 1107, name: 'NONE', period: null };
var contraceptives = [
{ concept: 190, name: 'CONDOMS', period: 'Short term' },
{ concept: 780, name: 'ORAL CONTRACEPTION', period: 'Short term' },
{
concept: 907,
name: 'MEDROXYPROGESTERONE ACETATE',
period: 'Short term'
},
{ concept: 5278, name: 'DIAPHRAGM', period: 'Short term' },
{
concept: 5279,
name: 'INJECTABLE CONTRACEPTIVE',
period: 'Long term'
},
{ concept: 5622, name: 'OTHER NON-CODED', period: null },
{ concept: 5275, name: 'INTRAUTERINE DEVICE', period: 'Long term' },
{ concept: 5276, name: 'FEMALE STERILIZATION', period: 'Long term' },
{ concept: 5277, name: 'NATURAL FAMILY PLANNING', period: null },
{ concept: 1107, name: 'NONE', period: null },
{ concept: 6220, name: 'CONTRACEPTIVE IMPLANT', period: 'Long term' },
{
concept: 6218,
name: 'COMBINED HORMONE ORAL CONTRACEPTIVE PILL',
period: 'Short term'
},
{ concept: 6219, name: 'PERIODIC ABSTINENCE', period: null },
{ concept: 6217, name: 'PROGESTIN PILLS', period: 'Short term' },
{ concept: 6700, name: 'TUBAL LIGATION', period: 'Long term' },
{ concept: 6701, name: 'VASECTOMY', period: 'Long term' },
{
concept: 5841,
name: 'HERBAL TRADITIONAL MEDICATIONS',
period: 'Short term'
},
{ concept: 6717, name: 'FEMALE CONDOMS', period: 'Short term' },
{ concept: 6718, name: 'MALE CONDOMS', period: 'Short term' },
{
concept: 6725,
name: 'EMERGENCY CONTRACEPTIVE PILLS',
period: 'Short term'
},
{ concept: 8134, name: 'CONTRACEPTIVE SPONGE', period: 'Short term' },
{
concept: 5274,
name: 'FAMILY PLANNING VIA ORAL CONTRACEPTIVE PILLS',
period: 'Short term'
},
{ concept: 1624, name: 'DO NOT KNOW', period: null },
{ concept: 6707, name: 'UNDECIDED', period: null },
{
concept: 8300,
name: 'LACTATIONAL AMENORRHEA METHOD',
period: 'Short term'
},
{
concept: 9510,
name: '3-YEAR CONTRACEPTIVE IMPLANT',
period: 'Long term'
},
{
concept: 9511,
name: '5-YEAR CONTRACEPTIVE IMPLANT',
period: 'Long term'
},
{ concept: 1067, name: 'UNKNOWN', period: null },
{
concept: 9734,
name: 'COPPER INTRAUTERINE DEVICE',
period: 'Long term'
},
{
concept: 9735,
name: 'HORMONAL INTRAUTERINE DEVICE',
period: 'Long term'
},
{
concept: 10956,
name: 'CONTRACEPTION METHOD UNDECIDED',
period: null
},
{
concept: 10817,
name: 'NORPLANT(IMPLANTABLE CONTRACEPTIVE)',
period: 'Long term'
}
];
var contraceptiveMethod = {} | null;
_.each(contraceptives, function (contraceptive) {
if (contraceptive.concept === str) {
contraceptiveMethod = contraceptive;
}
});
if (contraceptiveMethod === 0 || typeof contraceptiveMethod != 'object')
return { concept: str, name: 'UNKNOWN', period: null };
return contraceptiveMethod;
},
getTestsOrderedNames: function getTestsOrderedNames(str) {
if (str === null || str === undefined) return '';
var tests = {
678: 'WBC',
21: 'Hb',
790: 'Cr',
654: 'ALT',
653: 'AST',
5497: 'CD4',
730: 'CD4%',
856: 'Viral Load',
1040: 'Rapid HIV',
1030: 'HIV DNA PCR',
2323: 'TB PCR',
2311: 'Sputum Culture',
307: 'Sputum AFB',
8064: 'Sputum Gene Xpert',
8070: 'MTB Finding',
8071: 'RIF Resistant Finding',
299: 'VDRL',
729: 'Platelets',
851: 'MCV',
12: 'Chest Xray',
1019: 'Complete Blood Count',
657: 'CD4 PANEL',
6126: 'HbA1c',
887: 'RBS',
6252: 'FBS',
1537: 'EKG',
857: 'UREA'
};
var testsCodes = str.toString().split(' ## ');
var testsNames = [];
_.each(testsCodes, function (code) {
testsNames.push(tests[code]);
});
return testsNames.join(',');
},
getCDMNames: function getCDMNames(tests, str) {
if (str === null || str === undefined) return '';
/*var tests = {
99:"LASIX",
250:"NIFEDIPINE",
920:"TAGRETOL",
1107: "NONE",
1242:"ENALAPRIL",
1243:"HCTZ",
2254:"INSULIN 70/30",
2255:"INSULIN NPH",
2256:"INSULIN HUMALOGUE",
2257:"GLIBENCLAMIDE",
2258:"GLICLAZIDE",
2259: "CHLORPROPAMIDE",
2260:"GLIMEPIRIDE",
2261:"METFORMIN",
2264:"LISINOPRIL/HCTZ",
2265:"LOSARTAN",
2266:"METROPOLOL",
2267:"ATENOLOL",
2268:"CAVEDILOL",
2276:"ATORVASTATIN",
2270: "PIOGLITAZONE",
2271: "ROSIGLITAZONE",
2278:"SILDENAFIL",
2279: "GLIBENCLAMIDE AND METFORMIN",
7303:"JUNIOR ASA",
8015:"INSULIN GLARGINE",
8020:"PREGABALIN",
9205:"FELODIPINE",
10049:"TELMISARTAN",
10050:"CANDESARTAN",
221: "RHEUMATIC HEART DISEASE",
664: "NEGATIVE",
703: "POSITIVE",
1115: "NORMAL",
1116: "ABNORMAL",
1118: "NOT DONE",
1136: "PULMONARY EFFUSION",
1137: "MILIARY CHANGES",
1138: "INDETERMINATE",
1304: "POOR SAMPLE QUALITY",
1530: "CARDIAC ARRHYTHMIA",
1531: "ATRIAL FIBRILLATION",
1532: "LEFT VENTRICULAR HYPERTROPHY",
1533: "RIGHT VENTRICULAR HYPERTROPHY",
1538: "DILATED CARDIOMYOPATHY",
1539: "PERICARDIAL EFFUSION",
1540: "MURAL THROMBI",
1541: "PULMONARY HYPERTENSION",
1542: "VENTRICULAR SEPTAL DEFECT",
5158: "EVIDENCE OF CARDIAC ENLARGEMENT",
5622: "OTHER NON-CODED",
6049: "INFILTRATE",
6050: "DIFFUSE NON-MILIARY CHANGES",
6052: "CAVITARY LESION",
1098: "MONTHLY",
1099: "WEEKLY",
1639: "MORNING",
1640: "NOON",
1641: "AFTERNOON",
1730: "EVENING",
1888: "TWICE A DAY",
1889: "THREE TIMES A DAY",
1890: "FOUR TIMES A DAY",
1891: "ONCE A DAY",
1899: "NUMBER OF MILLIGRAM",
2176: "EVERY NIGHT",
2178: "STAT",
5622: "OTHER NON-CODED",
7682: "ONCE EVERY TWO WEEKS",
7772: "AS NEEDED",
8909: "ONCE A WEEK",
8927: "ONCE",
9933: "ONCE EVERY THREE WEEKS",
10091: "FIVE TIMES DAILY",
10092: "TWICE A WEEK",
10093: "THREE TIMES A WEEK",
10094: "FOUR TIMES A WEEK",
1256: "START",
1257: "CONTINUE",
1259: "CHANGE",
1260: "STOP",
2261: "METFORMIN",
2257: "GLIBENCLAMIDE",
2254: "70% NPH INSULIN WITH 30% REGULAR INSULIN",
2256: "INSULIN LISPRO",
2255: "INSULIN NPH",
2258: "GLICLAZIDE",
2259: "CHLORPROPAMIDE",
2260: "GLIMEPIRIDE",
279: "INSULIN, LENTE",
282: "INSULIN, REGULAR",
2270: "PIOGLITAZONE",
2271: "ROSIGLITAZONE",
2279: "GLIBENCLAMIDE AND METFORMIN",
1107: "NONE",
7281:"NEW DM PATIENT",
7282:"KNOWN DM PATIENT",
7285:"NEW HTN PATIENT",
7286:"KNOWN HTN PATIENT",
1878:"STROKE",
8076:"T.I.A",
1456:"HEART FAILURE",
8077:"ISCHEMIC H.D ",
821:"PERIPHERAL NEUROPATHY",
8084:"DIABETIC RETINOPATHY",
8085:"GASTROPATHY",
8086:"AUTONOMIC NEUROPATHY",
70:"CATARACTS",
1878:"STROKE",
1456:"HEART FAILURE",
1885:"KIDNEY FAILURE",
6730:"VISUAL IMPAIREMENT",
6636:"NEUROPATHY",
8087:"DIABETIC FOOT ULCER",
136:"CHEST PAIN",
175:"DIABETES MELLITUS",
5949:"FATIGUE",
620:"HEADACHE"
};*/
var testsCodes = str.toString().split(' ## ');
var testsNames = [];
_.each(testsCodes, function (code) {
code = code.trim();
testsNames.push(tests[code]);
});
return testsNames.join(',');
},
transformMedicalRefillToClinical: function transformMedicalRefillToClinical(
hivSummaries
) {
let transfromedArray = [];
_.each(hivSummaries, (hivSummary) => {
if (hivSummary.encounter_type == 186) {
// console.log('summarytest',hivSummary);
hivSummary.is_clinical_encounter = 1;
// console.log('summarytest',hivSummary);
}
transfromedArray.push(hivSummary);
});
return transfromedArray;
},
getConceptNames: function getCDMNames(concepts, str) {
if (str === null || str === undefined) return '';
var testsCodes = str.toString().split(' ## ');
var testsNames = [];
_.each(testsCodes, function (code) {
code = code.trim();
testsNames.push(concepts[code]);
});
return testsNames.join(',');
},
resolvedLabOrderErrors: function resolvedLabOrderErrors(
vlerror,
cd4eror,
pcrerror
) {
var message = '';
if (vlerror === 1) message = 'Error processing Viral Load';
if (cd4eror === 1) {
if (message !== '') message = message + ', ' + 'Error processing cd4';
else message = 'Error processing cd4';
}
if (pcrerror === 1) {
if (message !== '')
message = message + ', ' + 'Error processing hiv dna pcr';
else message = 'Error processing hiv dna pcr';
}
return message;
},
buildWhereClauseForDataEntryIndicators: function buildWhereClauseForDataEntryIndicators(
queryParams,
where
) {
if (queryParams.locations) {
var locations = [];
_.each(queryParams.locations.split(','), function (loc) {
locations.push(Number(loc));
});
where[0] = where[0] + ' and t2.location_id in ?';
where.push(locations);
}
if (queryParams.provideruuid) {
where[0] = where[0] + ' and t4.uuid = ?';
where.push(queryParams.provideruuid);
}
if (queryParams.creatoruuid) {
where[0] = where[0] + ' and t5.uuid = ?';
where.push(queryParams.creatoruuid);
}
if (queryParams.encounterTypeIds) {
var encounterTypes = [];
_.each(queryParams.encounterTypeIds.split(','), function (encType) {
encounterTypes.push(Number(encType));
});
where[0] = where[0] + ' and t2.encounter_type in ?';
where.push(encounterTypes);
}
if (queryParams.formIds) {
var formIds = [];
_.each(queryParams.formIds.split(','), function (formid) {
formIds.push(Number(formid));
});
where[0] = where[0] + ' and t2.form_id in ?';
where.push(formIds);
}
},
decodeBase64Image: function decodeBase64Image(dataString) {
var matches = dataString.match(/^data:([A-Za-z-+\/]+);base64,(.+)$/),
response = {};
if (matches.length !== 3) {
return new Error('Invalid input string');
}
response.type = matches[1];
response.data = new Buffer(matches[2], 'base64');
return response;
},
buildWhereParamsDataEntryIndicators: function buildWhereParamsDataEntryIndicators(
queryParams,
where
) {
if (queryParams.locations) {
var locations = [];
_.each(queryParams.locations.split(','), function (loc) {
locations.push(Number(loc));
});
where.locations = locations;
}
if (queryParams.provideruuid) {
where.providerUuid = queryParams.provideruuid;
}
if (queryParams.creatoruuid) {
var creatorUuids = [];
_.each(queryParams.creatoruuid.split(','), function (creator) {
creatorUuids.push(creator);
});
where.creator = creatorUuids;
}
if (queryParams.encounterTypeIds) {
var encounterTypes = [];
_.each(queryParams.encounterTypeIds.split(','), function (encType) {
encounterTypes.push(Number(encType));
});
where.encounterTypes = encounterTypes;
}
if (queryParams.visitTypeIds) {
var visitTypes = [];
_.each(queryParams.visitTypeIds.split(','), function (visitType) {
visitTypes.push(Number(visitType));
});
where.visitTypes = visitTypes;
}
if (queryParams.formIds) {
var formIds = [];
_.each(queryParams.formIds.split(','), function (formid) {
formIds.push(Number(formid));
});
where.formIds = formIds;
}
},
filterDate: function filterDate(date) {
if (!_.isNull(date)) {
return moment(date).format('DD-MM-YYYY');
}
return date;
},
titleCase: function titleCase(name) {
if (name) {
name = name.toLowerCase().split(' ');
for (var i = 0; i < name.length; i++) {
name[i] = name[i].charAt(0).toUpperCase() + name[i].slice(1);
}
return name.join(' ');
}
}
};
})();