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Genome.gb
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LOCUS NC_004675 2766 bp ss-DNA circular VRL 13-AUG-2018
DEFINITION Tomato curly stunt virus, complete genome.
ACCESSION NC_004675
VERSION NC_004675.1
DBLINK BioProject: PRJNA485481
KEYWORDS RefSeq.
SOURCE Tomato curly stunt virus
ORGANISM Tomato curly stunt virus
Viruses; Monodnaviria; Shotokuvirae; Cressdnaviricota;
Repensiviricetes; Geplafuvirales; Geminiviridae; Begomovirus.
REFERENCE 1 (bases 1 to 2766)
AUTHORS Pieterson,G., Idris,A.M., Kruger,K. and Brown,J.K.
TITLE Tomato curly stunt virus, a new Begomovirus of tomato within
TYLCV-Is cluster in South Africa
JOURNAL Plant Dis. 84 (7), 810 (2000)
REFERENCE 2 (bases 1 to 2766)
CONSRTM NCBI Genome Project
TITLE Direct Submission
JOURNAL Submitted (05-MAY-2009) National Center for Biotechnology
Information, NIH, Bethesda, MD 20894, USA
REFERENCE 3 (bases 1 to 2766)
AUTHORS Pieterson,G., Idris,A.M., Kruger,K. and Brown,J.K.
TITLE Direct Submission
JOURNAL Submitted (18-JUL-2002) Plant Sciences, University of Arizona,
Tucson, AZ 85721, USA
REMARK Sequence update by submitter
REFERENCE 4 (bases 1 to 2766)
AUTHORS Pieterson,G., Idris,A.M., Kruger,K. and Brown,J.K.
TITLE Direct Submission
JOURNAL Submitted (28-APR-2000) Plant Sciences, University of Arizona,
Tucson, AZ 85721, USA
COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final
NCBI review. The reference sequence was derived from AF261885.
COMPLETENESS: full length.
FEATURES Location/Qualifiers
source 1..2766
/organism="Tomato curly stunt virus"
/mol_type="genomic DNA"
/db_xref="taxon:128941"
/country="South Africa"
gene 139..480
/gene="v2"
/locus_tag="ToCSVgp1"
/db_xref="GeneID:1460809"
CDS 139..480
/gene="v2"
/locus_tag="ToCSVgp1"
/codon_start=1
/product="V2 protein"
/protein_id="NP_817115.1"
/db_xref="GeneID:1460809"
/translation="MWDPLLNEFPDSVHGFRCMLAVKYLQSVEATYEPNTLGHDLIRD
LILVIRAKDYVEASRRYNHFHARLEGAEKAELRQPVHQPCCCPHCPRHKQATIMDVQA
HVSKAQDVQNV"
gene 299..1075
/gene="v1"
/locus_tag="ToCSVgp2"
/db_xref="GeneID:1460810"
CDS 299..1075
/gene="v1"
/locus_tag="ToCSVgp2"
/codon_start=1
/product="coat protein V1"
/protein_id="NP_817116.1"
/db_xref="GeneID:1460810"
/translation="MSKRPADIIISTPASKVRRRLNFDSPFTSRAVVPIAPGTNKRRS
WTYRPMYRKPKMYRMYRSPDVPRGCEGPCKIQSYEQRDDVKHTGIVRCISDITKGPGL
THRTGKRFVVKSVYILGKVWMDENIKKQNHTTNVMFFLVRDRRPYGTSPMDFGQVFNM
FDNEPSTATVKNDLRDRFQVLRKFTATVVGGPSGLKEQALVKRFFRLNSHVTYNHQEA
AKYENHTENALLLYMACTHASNPVYATLKIRVYFYDSVMN"
gene complement(1072..1476)
/gene="c3"
/locus_tag="ToCSVgp3"
/db_xref="GeneID:1460811"
CDS complement(1072..1476)
/gene="c3"
/locus_tag="ToCSVgp3"
/codon_start=1
/product="C3 protein"
/protein_id="NP_817117.1"
/db_xref="GeneID:1460811"
/translation="MDLRTGELITAHQAQNGVYIWEITNPLYFKIINHDSRPFHTNHD
IISIQIRFNHNLRKELGIHKCFLNFQVWTTLQPQTGRFLSVFKFQVFKYLDNLGVISI
NNVIRAVDHVLYNVLVNTIDVVETHEIKFNIY"
gene complement(1217..1624)
/gene="c2"
/locus_tag="ToCSVgp4"
/db_xref="GeneID:1460812"
CDS complement(1217..1624)
/gene="c2"
/locus_tag="ToCSVgp4"
/codon_start=1
/product="C2 protein"
/protein_id="NP_817118.1"
/db_xref="GeneID:1460812"
/translation="MRSSSPSTSHCTQVPIKVQHRIAKKRVVRRRRVDLDCGCTYYLH
IDCSNHGFTHRGTHHCSSGPEWRLYLGDNKSPLFQDYQPRQQTVPHEPRHHIDPDTVQ
PQPPEGTGDSQMFSQLPSLDDLTASDWSFLKRI"
gene complement(1533..2612)
/gene="c1"
/locus_tag="ToCSVgp5"
/db_xref="GeneID:1460813"
CDS complement(1533..2612)
/gene="c1"
/locus_tag="ToCSVgp5"
/codon_start=1
/product="C1 protein"
/protein_id="NP_817119.1"
/db_xref="GeneID:1460813"
/translation="MAPPKRFQINSKNYFVTYPKCSLTKEESLSQLLNLETPTNKKYI
KICRELHENGEPHLHVLIQFERKFNCKNHRFFDLVSPNRSAHFHPNIQGAKSSSDVKS
YIDKDGDTLEWGEFQVDGRSARGGCQNANDACADALNAGSAEAAMAIIREKLPKDFIF
QYHNLKTNLDRIFQAPPEPYISPFSSSSFDQVPEELEEWVSENVCGAAARPWRPNSIV
IEGDSRSGKTIWARSLGQHNYLCGHLDLSPKVYSNDAWYNVIDDVDPHYLKHWKEFFG
AQRDWQSNTKYGKPIQIKGGIPTIFLCNPGPTSSYKEYLDEDKNTSLKAWTIKNAVFI
TLNQPLYSSPNQGPASNSQEESSQA"
ORIGIN
1 accggatggc cgtgccccca aaaaaaagtg gtccccacgc actattttat gtcgaccaat
61 cagaatgtcg ccttatcgct tagttatctg ctattttgtc tttatatggg aaacttcgcg
121 gaagttacca ttgtcaagat gtgggatcca ctgttaaacg aattcccaga ctccgtccac
181 ggttttcgtt gtatgcttgc tgttaaatat ctgcagtccg ttgaagccac atacgagccc
241 aacacattgg gccacgatct tatacgagat ctgattctgg ttatcagggc aaaagattat
301 gtcgaagcgt cccgccgata taatcatttc cacgcccgcc tcgaaggtgc ggagaaggct
361 gaacttcgac agcccgttca ccagccgtgc tgttgtcccc attgccccag gcacaaacaa
421 gcgacgatca tggacgtaca ggcccatgta tcgaaagccc aagatgtaca gaatgtatag
481 aagccctgat gtccctcgag gttgtgaagg cccatgtaag atccagtcgt atgaacagcg
541 cgatgatgtg aagcacaccg gtatagttag gtgtatcagt gacattacaa agggtcctgg
601 tctgacccat cgcacgggta aaaggttcgt ggtgaagtct gtctatatac tcggtaaggt
661 atggatggat gagaacatca agaagcagaa ccacactacc aatgttatgt ttttcctagt
721 ccgagataga aggccctatg gaacaagccc aatggacttt gggcaggtgt ttaacatgtt
781 tgataacgag cccagtacag ccacggtgaa gaacgatctt cgtgatcgat tccaggtgtt
841 gcgcaagttt acagccaccg ttgttggtgg tccctctggt cttaaggagc aggctcttgt
901 gaagcgtttc ttcaggttaa acagccatgt aacctataac catcaggaag cagccaagta
961 cgagaaccat accgagaatg cgttgttgtt gtatatggca tgtacccatg cctctaatcc
1021 tgtgtatgcc acgttaaaaa tacgtgtata tttttatgac tcagtgatga attaataaat
1081 attaaatttt atttcatgtg tctcaacaac atcgatagtg tttacaagta cattataaag
1141 tacatgatca actgctctaa ttacattgtt aattgaaatt acacccaaat tatctaaata
1201 cttaaaaact tgaaatttaa atacgcttaa gaaacgacca gtctgaggct gtaaggtcgt
1261 ccagacttgg aagttgagaa aacatttgtg aatccccagt tccttccgga ggttgtggtt
1321 gaaccgtatc tggatcgata tgatgtcgtg gttcgtgtgg aacggtctgc tgtcgtggtt
1381 gataatcttg aaatagaggg gatttgttat ctcccaaata tagacgccat tctgggcctg
1441 atgagcagtg atgagttccc cggtgcgtaa atccatggtt gctgcagtcg atgtggaggt
1501 aatatgtaca cccgcaatca agatcaactc gcctacgcct gactactctc ttcttggcta
1561 ttcgatgctg gaccttgatt gggacttgag tacagtggct ggttgagggt gatgaagacc
1621 gcattcttta tagtccaagc cttcagggat gtattcttat cctcatcgag atattcttta
1681 tatgaggatg ttgggcctgg attgcagagg aagatagtgg gaatgccgcc tttaatttga
1741 attggtttcc cgtacttcgt gttgctttgc cagtcccttt gggccccaaa gaattccttc
1801 cagtgcttta ggtaatgcgg atctacgtca tcaatgacgt tataccaagc gtcattagaa
1861 tatacctttg gacttaagtc taaatgacca cataagtaat tatgttgccc taatgatcta
1921 gcccaaatag ttttgccgga acgactatcg ccctctatta caatactatt gggtctccaa
1981 ggccgcgcag cggcaccaca cacattctca gagacccact cttcaagttc ctcagggact
2041 tgatcaaaag aagatgaaga aaaaggagaa atataaggct ctgggggagc ctggaaaatc
2101 ctatctaaat tagtctttaa attatgatac tgaaaaataa aatctttagg gagtttttcc
2161 ctaataatag ccatagcggc ttcagcggaa cctgcgttta aagcgtcggc gcatgcgtcg
2221 ttagcatttt ggcagcctcc tctagcactt ctgccgtcga cctggaattc tccccattca
2281 agtgtgtctc catccttgtc gatgtaggac ttgacgtcgg agctggattt agctccctga
2341 atgtttggat ggaaatgtgc tgacctgttt ggggatacca ggtcgaagaa tcggtgattc
2401 ttgcagttga attttctctc gaactgaata agcacgtgga gatgaggttc cccattttcg
2461 tgtagctctc tgcagatttt gatgtatttt ttattggtgg gtgtttcaag gtttaataat
2521 tgggagagtg actcttcctt tgtgagagag cattttggat atgtgacgaa atagtttttg
2581 gaatttattt gaaagcgctt cggaggagcc atttggtcaa tgggtaccga ttgactctca
2641 aattgcattc tcctggtata tcggtaccca atatatagtg ggtactgaat ggcacaattg
2701 taatttgtgt gaaattaatt ggtatttcaa aattcaaact cccaaagcgg ccatccgatt
2761 aatatt
//