diff --git a/src/scaffoldmaker/meshtypes/meshtype_3d_colon1.py b/src/scaffoldmaker/meshtypes/meshtype_3d_colon1.py index 6118a7df..9f445a37 100644 --- a/src/scaffoldmaker/meshtypes/meshtype_3d_colon1.py +++ b/src/scaffoldmaker/meshtypes/meshtype_3d_colon1.py @@ -290,10 +290,10 @@ def getDefaultOptions(cls, parameterSetName='Default'): } if 'Cattle 1' in parameterSetName: options['Number of segments'] = 40 - options['Proximal length'] = 880.0 + options['Proximal length'] = 900.0 options['Transverse length'] = 3500.0 options['Distal length'] = 1650.0 - options['Proximal inner radius'] = 30.0 + options['Proximal inner radius'] = 35.0 options['Proximal tenia coli width'] = 3.0 options['Proximal-transverse inner radius'] = 15.0 options['Proximal-transverse tenia coli width'] = 3.0 diff --git a/src/scaffoldmaker/meshtypes/meshtype_3d_smallintestine1.py b/src/scaffoldmaker/meshtypes/meshtype_3d_smallintestine1.py index 5d0695c4..13c4ca59 100644 --- a/src/scaffoldmaker/meshtypes/meshtype_3d_smallintestine1.py +++ b/src/scaffoldmaker/meshtypes/meshtype_3d_smallintestine1.py @@ -27,6 +27,554 @@ class MeshType_3d_smallintestine1(Scaffold_base): ''' centralPathDefaultScaffoldPackages = { + 'Cattle 1' : ScaffoldPackage(MeshType_1d_path1, { + 'scaffoldSettings' : { + 'D2 derivatives': True, + 'Coordinate dimensions' : 3, + 'Length' : 1.0, + 'Number of elements' : 536 + }, + 'meshEdits' : exnodeStringFromNodeValues( + [ Node.VALUE_LABEL_VALUE, Node.VALUE_LABEL_D_DS1, Node.VALUE_LABEL_D_DS2, Node.VALUE_LABEL_D2_DS1DS2 ], [ + [ [ -502.3, 732.1, 92.0 ], [ -49.8, -90.7, 0.0 ], [ 0.0, 0.0, 57.5 ], [ 0.0, 0.0, 0.5 ] ], + [ [ -543.1, 654.8, 92.0 ], [ -31.7, -64.0, 0.0 ], [ 0.0, 0.0, 57.5 ], [ 0.0, 0.0, 0.5 ] ], + [ [ -566.2, 605.0, 92.0 ], [ -43.4, -40.2, 0.0 ], [ 0.0, 0.0, 57.5 ], [ 0.0, 0.0, 0.5 ] ], + [ [ -623.9, 583.6, 92.0 ], [ -58.9, 0.0, 0.0 ], [ 0.0, 0.0, 57.5 ], [ 0.0, 0.0, 0.5 ] ], + [ [ -674.4, 602.3, 92.0 ], [ -25.8, 24.9, 0.0 ], [ 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cls.centralPathDefaultScaffoldPackages['Cattle 1'] + else: + centralPathOption = cls.centralPathDefaultScaffoldPackages['Mouse 1'] options = { 'Central path': copy.deepcopy(centralPathOption), 'Number of segments': 100, @@ -119,6 +671,17 @@ def getDefaultOptions(cls, parameterSetName='Default'): 'Refine number of elements along': 1, 'Refine number of elements through wall': 1 } + if 'Cattle 1' in parameterSetName: + options['Number of segments'] = 300 + options['Duodenum length'] = 1000.0 + options['Jejunum length'] = 14700.0 + options['Ileum length'] = 26500.0 + options['Duodenum inner radius'] = 10.0 + options['Duodenum-jejunum inner radius'] = 10.0 + options['Jejunum-ileum inner radius'] = 20.0 + options['Ileum inner radius'] = 10.0 + options['Wall thickness'] = 2.0 + return options @staticmethod @@ -236,7 +799,8 @@ def generateBaseMesh(cls, region, options): [Node.VALUE_LABEL_VALUE, Node.VALUE_LABEL_D_DS1, Node.VALUE_LABEL_D_DS2, Node.VALUE_LABEL_D2_DS1DS2]) # for i in range(len(cx)): - # print(i, '[', cx[i], ',', cd1[i], ',', cd2[i],',', cd12[i], '],') + # print(i+1, '[', cx[i], ',', cd1[i], ',', cd2[i],',', cd12[i], '],') + del tmpRegion # find arclength of colon