diff --git a/poetry.lock b/poetry.lock index ad3f2ea3..e571ef4b 100644 --- a/poetry.lock +++ b/poetry.lock @@ -42,7 +42,7 @@ pytz = {version = ">=2015.7", markers = "python_version < \"3.9\""} [[package]] name = "benchmark-4dn" -version = "0.5.21" +version = "0.5.23" description = "Benchmark functions that returns total space, mem, cpu given input size and parameters for the CWL workflows" category = "main" optional = false @@ -50,14 +50,14 @@ python-versions = ">=3.5,<4.0" [[package]] name = "boto3" -version = "1.26.95" +version = "1.26.111" description = "The AWS SDK for Python" category = "main" optional = false python-versions = ">= 3.7" [package.dependencies] -botocore = ">=1.29.95,<1.30.0" +botocore = ">=1.29.111,<1.30.0" jmespath = ">=0.7.1,<2.0.0" s3transfer = ">=0.6.0,<0.7.0" @@ -66,7 +66,7 @@ crt = ["botocore[crt] (>=1.21.0,<2.0a0)"] [[package]] name = "botocore" -version = "1.29.95" +version = "1.29.111" description = "Low-level, data-driven core of boto 3." category = "main" optional = false @@ -169,7 +169,7 @@ python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*" [[package]] name = "importlib-metadata" -version = "6.1.0" +version = "6.3.0" description = "Read metadata from Python packages" category = "dev" optional = false @@ -287,11 +287,11 @@ python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*" [[package]] name = "pygments" -version = "2.14.0" +version = "2.15.0" description = "Pygments is a syntax highlighting package written in Python." category = "dev" optional = false -python-versions = ">=3.6" +python-versions = ">=3.7" [package.extras] plugins = ["importlib-metadata"] @@ -385,7 +385,7 @@ docutils = ">=0.14" [[package]] name = "pytz" -version = "2022.7.1" +version = "2023.3" description = "World timezone definitions, modern and historical" category = "dev" optional = false @@ -425,7 +425,7 @@ crt = ["botocore[crt] (>=1.20.29,<2.0a.0)"] [[package]] name = "setuptools" -version = "67.6.0" +version = "67.6.1" description = "Easily download, build, install, upgrade, and uninstall Python packages" category = "dev" optional = false @@ -608,11 +608,11 @@ python-versions = ">=3.7" [[package]] name = "tomlkit" -version = "0.11.6" +version = "0.11.7" description = "Style preserving TOML library" category = "main" optional = false -python-versions = ">=3.6" +python-versions = ">=3.7" [[package]] name = "typing-extensions" @@ -650,7 +650,7 @@ testing = ["big-O", "flake8 (<5)", "jaraco.functools", "jaraco.itertools", "more [metadata] lock-version = "1.1" python-versions = ">=3.7,<3.9" -content-hash = "dd6a0ed414f1907a1945dca03e38b402eea130c64305ee802e4cc0b630e43841" +content-hash = "fd1d050dd0d3e961d43ea089d662e78bb7dd1e1ef17785646464b0e436a676a4" [metadata.files] alabaster = [ @@ -669,16 +669,16 @@ babel = [ {file = "Babel-2.12.1.tar.gz", hash = "sha256:cc2d99999cd01d44420ae725a21c9e3711b3aadc7976d6147f622d8581963455"}, ] benchmark-4dn = [ - {file = "Benchmark-4dn-0.5.21.tar.gz", hash = "sha256:7b0dbe88be53ca2a629d52a64907781431fda68d23be8e08cd1d8e013eea6a8c"}, - {file = "benchmark_4dn-0.5.21-py3-none-any.whl", hash = "sha256:7420f4f712b771028af310c63723c0b21e0678edac195449831b5702d64dc191"}, + {file = "Benchmark-4dn-0.5.23.tar.gz", hash = "sha256:f17a02c5cd9669f96ea65cb31603106bb77a0a01775b4fd2983a95ab66ee7b7c"}, + {file = "benchmark_4dn-0.5.23-py3-none-any.whl", hash = "sha256:bd8aa8c252e868f1d7afa2c2003e1148f409e6dc825af5656f37cd5fec30e2c3"}, ] boto3 = [ - {file = "boto3-1.26.95-py3-none-any.whl", hash = "sha256:2f07523d45da7a970d18037676e1fb78401ce3f44f4cc26a6a991be8c519b62b"}, - {file = "boto3-1.26.95.tar.gz", hash = "sha256:945d32fa9bbbb5fc775378bc2c19278797b54ad57e24bd4dbd46ab27f0938152"}, + {file = "boto3-1.26.111-py3-none-any.whl", hash = "sha256:6cb601c4232537aca2dd216282ff4383a7277f6a150b2c8947eda0c3933d0223"}, + {file = "boto3-1.26.111.tar.gz", hash = "sha256:db8733f0a723c4548b6565d8665b876e93f28837d8d6bae40cc03a6e597cd6a6"}, ] botocore = [ - {file = "botocore-1.29.95-py3-none-any.whl", hash = "sha256:5f5f1c8125f8c331f561ca0a7a892f709df206714c306c48fd907eee469926cb"}, - {file = "botocore-1.29.95.tar.gz", hash = "sha256:e9ffd4a2fc415c313eda03713c212e3121084fdcb21e20aac5b15924a4ae5a9d"}, + {file = "botocore-1.29.111-py3-none-any.whl", hash = "sha256:baa6442df9b539c5c4e622bd22b47bc3594a0428f280587a359a9298e73a6e48"}, + {file = "botocore-1.29.111.tar.gz", hash = "sha256:c3a51d80ceac0945969f94894651c4728525c7cf2df7d7838063c3516f5ee9e3"}, ] certifi = [ {file = "certifi-2022.12.7-py3-none-any.whl", hash = "sha256:4ad3232f5e926d6718ec31cfc1fcadfde020920e278684144551c91769c7bc18"}, @@ -765,8 +765,8 @@ imagesize = [ {file = "imagesize-1.4.1.tar.gz", hash = "sha256:69150444affb9cb0d5cc5a92b3676f0b2fb7cd9ae39e947a5e11a36b4497cd4a"}, ] importlib-metadata = [ - {file = "importlib_metadata-6.1.0-py3-none-any.whl", hash = "sha256:ff80f3b5394912eb1b108fcfd444dc78b7f1f3e16b16188054bd01cb9cb86f09"}, - {file = "importlib_metadata-6.1.0.tar.gz", hash = "sha256:43ce9281e097583d758c2c708c4376371261a02c34682491a8e98352365aad20"}, + {file = "importlib_metadata-6.3.0-py3-none-any.whl", hash = "sha256:8f8bd2af397cf33bd344d35cfe7f489219b7d14fc79a3f854b75b8417e9226b0"}, + {file = "importlib_metadata-6.3.0.tar.gz", hash = "sha256:23c2bcae4762dfb0bbe072d358faec24957901d75b6c4ab11172c0c982532402"}, ] iniconfig = [ {file = "iniconfig-2.0.0-py3-none-any.whl", hash = "sha256:b6a85871a79d2e3b22d2d1b94ac2824226a63c6b741c88f7ae975f18b6778374"}, @@ -862,8 +862,8 @@ pyflakes = [ {file = "pyflakes-2.3.1.tar.gz", hash = "sha256:f5bc8ecabc05bb9d291eb5203d6810b49040f6ff446a756326104746cc00c1db"}, ] pygments = [ - {file = "Pygments-2.14.0-py3-none-any.whl", hash = "sha256:fa7bd7bd2771287c0de303af8bfdfc731f51bd2c6a47ab69d117138893b82717"}, - {file = "Pygments-2.14.0.tar.gz", hash = "sha256:b3ed06a9e8ac9a9aae5a6f5dbe78a8a58655d17b43b93c078f094ddc476ae297"}, + {file = "Pygments-2.15.0-py3-none-any.whl", hash = "sha256:77a3299119af881904cd5ecd1ac6a66214b6e9bed1f2db16993b54adede64094"}, + {file = "Pygments-2.15.0.tar.gz", hash = "sha256:f7e36cffc4c517fbc252861b9a6e4644ca0e5abadf9a113c72d1358ad09b9500"}, ] pytest = [ {file = "pytest-6.2.5-py3-none-any.whl", hash = "sha256:7310f8d27bc79ced999e760ca304d69f6ba6c6649c0b60fb0e04a4a77cacc134"}, @@ -890,8 +890,8 @@ python-lambda-4dn = [ {file = "python_lambda_4dn-0.12.3-py2.py3-none-any.whl", hash = "sha256:a87fd330fcf6702165904dbe884610df5bf029c55cd2cc176d22f788b04a5f21"}, ] pytz = [ - {file = "pytz-2022.7.1-py2.py3-none-any.whl", hash = "sha256:78f4f37d8198e0627c5f1143240bb0206b8691d8d7ac6d78fee88b78733f8c4a"}, - {file = "pytz-2022.7.1.tar.gz", hash = "sha256:01a0681c4b9684a28304615eba55d1ab31ae00bf68ec157ec3708a8182dbbcd0"}, + {file = "pytz-2023.3-py2.py3-none-any.whl", hash = "sha256:a151b3abb88eda1d4e34a9814df37de2a80e301e68ba0fd856fb9b46bfbbbffb"}, + {file = "pytz-2023.3.tar.gz", hash = "sha256:1d8ce29db189191fb55338ee6d0387d82ab59f3d00eac103412d64e0ebd0c588"}, ] requests = [ {file = "requests-2.27.1-py2.py3-none-any.whl", hash = "sha256:f22fa1e554c9ddfd16e6e41ac79759e17be9e492b3587efa038054674760e72d"}, @@ -902,8 +902,8 @@ s3transfer = [ {file = "s3transfer-0.6.0.tar.gz", hash = "sha256:2ed07d3866f523cc561bf4a00fc5535827981b117dd7876f036b0c1aca42c947"}, ] setuptools = [ - {file = "setuptools-67.6.0-py3-none-any.whl", hash = "sha256:b78aaa36f6b90a074c1fa651168723acbf45d14cb1196b6f02c0fd07f17623b2"}, - {file = "setuptools-67.6.0.tar.gz", hash = "sha256:2ee892cd5f29f3373097f5a814697e397cf3ce313616df0af11231e2ad118077"}, + {file = "setuptools-67.6.1-py3-none-any.whl", hash = "sha256:e728ca814a823bf7bf60162daf9db95b93d532948c4c0bea762ce62f60189078"}, + {file = "setuptools-67.6.1.tar.gz", hash = "sha256:257de92a9d50a60b8e22abfcbb771571fde0dbf3ec234463212027a4eeecbe9a"}, ] six = [ {file = "six-1.16.0-py2.py3-none-any.whl", hash = "sha256:8abb2f1d86890a2dfb989f9a77cfcfd3e47c2a354b01111771326f8aa26e0254"}, @@ -962,8 +962,8 @@ tomli = [ {file = "tomli-2.0.1.tar.gz", hash = "sha256:de526c12914f0c550d15924c62d72abc48d6fe7364aa87328337a31007fe8a4f"}, ] tomlkit = [ - {file = "tomlkit-0.11.6-py3-none-any.whl", hash = "sha256:07de26b0d8cfc18f871aec595fda24d95b08fef89d147caa861939f37230bf4b"}, - {file = "tomlkit-0.11.6.tar.gz", hash = "sha256:71b952e5721688937fb02cf9d354dbcf0785066149d2855e44531ebdd2b65d73"}, + {file = "tomlkit-0.11.7-py3-none-any.whl", hash = "sha256:5325463a7da2ef0c6bbfefb62a3dc883aebe679984709aee32a317907d0a8d3c"}, + {file = "tomlkit-0.11.7.tar.gz", hash = "sha256:f392ef70ad87a672f02519f99967d28a4d3047133e2d1df936511465fbb3791d"}, ] typing-extensions = [ {file = "typing_extensions-4.5.0-py3-none-any.whl", hash = "sha256:fb33085c39dd998ac16d1431ebc293a8b3eedd00fd4a32de0ff79002c19511b4"}, diff --git a/pyproject.toml b/pyproject.toml index 8d8959a6..256608e6 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -1,6 +1,6 @@ [tool.poetry] name = "tibanna" -version = "3.3.0" +version = "3.3.1" description = "Tibanna runs portable pipelines (in CWL/WDL) on the AWS Cloud." authors = ["4DN-DCIC Team "] license = "MIT" @@ -32,7 +32,7 @@ python-lambda-4dn = "0.12.3" boto3 = "^1.9.0" botocore = "^1.12.1" requests = "2.27.1" -Benchmark-4dn = "^0.5.21" +Benchmark-4dn = "^0.5.23" tomlkit = "^0.11.0" [tool.poetry.dev-dependencies] diff --git a/tibanna/lambdas/requirements.txt b/tibanna/lambdas/requirements.txt index c60402dd..c2dec050 100755 --- a/tibanna/lambdas/requirements.txt +++ b/tibanna/lambdas/requirements.txt @@ -1,4 +1,4 @@ -Benchmark-4dn>=0.5.21 +Benchmark-4dn>=0.5.23 boto3>=1.9.0 botocore>=1.12.1 tomlkit>=0.11.0