diff --git a/requirements/constraints_py3.10.txt b/requirements/constraints_py3.10.txt index df616d172..bb982d8ce 100644 --- a/requirements/constraints_py3.10.txt +++ b/requirements/constraints_py3.10.txt @@ -4,14 +4,16 @@ alabaster==0.7.16 # via sphinx altgraph==0.17.4 # via pyinstaller -annotated-types==0.6.0 +annotated-types==0.7.0 # via pydantic -app-model==0.2.6 +app-model==0.2.7 # via napari appdirs==1.4.4 # via + # partseg (pyproject.toml) # napari # npe2 + # pint asttokens==2.4.1 # via stack-data attrs==23.2.0 @@ -24,7 +26,7 @@ build==1.2.1 # via npe2 cachey==0.2.1 # via napari -certifi==2024.2.2 +certifi==2024.6.2 # via # napari # requests @@ -39,15 +41,18 @@ cloudpickle==3.0.0 # via dask comm==0.2.2 # via ipykernel -coverage==7.5.1 +coverage==7.5.3 + # via partseg (pyproject.toml) czifile==2019.7.2 -dask==2024.5.0 + # via partseg (pyproject.toml) +dask==2024.6.0 # via napari debugpy==1.8.1 # via ipykernel decorator==5.1.1 # via ipython defusedxml==0.7.1 + # via partseg (pyproject.toml) docstring-parser==0.16 # via magicgui docutils==0.21.2 @@ -60,21 +65,30 @@ exceptiongroup==1.2.1 # pytest executing==2.0.1 # via stack-data +flexcache==0.3 + # via pint +flexparser==0.3.1 + # via pint fonticon-fontawesome6==6.4.0 + # via partseg (pyproject.toml) freetype-py==2.4.0 # via vispy -fsspec==2024.3.1 +fsspec==2024.6.0 # via dask h5py==3.11.0 + # via partseg (pyproject.toml) heapdict==1.0.1 # via cachey hsluv==5.0.4 # via vispy idna==3.7 # via requests -imagecodecs==2024.1.1 +imagecodecs==2024.6.1 + # via partseg (pyproject.toml) imageio==2.34.1 # via + # -r requirements/version_denylist.txt + # partseg (pyproject.toml) # napari # napari-svg # scikit-image @@ -90,10 +104,12 @@ iniconfig==2.0.0 # via pytest ipykernel==6.29.4 # via + # partseg (pyproject.toml) # napari-console # qtconsole -ipython==8.24.0 +ipython==8.25.0 # via + # partseg (pyproject.toml) # ipykernel # napari-console jedi==0.19.1 @@ -104,7 +120,7 @@ jsonschema==4.22.0 # via napari jsonschema-specifications==2023.12.1 # via jsonschema -jupyter-client==8.6.1 +jupyter-client==8.6.2 # via # ipykernel # qtconsole @@ -120,16 +136,23 @@ lazy-loader==0.4 # napari # scikit-image local-migrator==0.1.10 - # via nme + # via + # partseg (pyproject.toml) + # nme locket==1.0.0 # via partd -lxml==5.2.1 - # via lxml-html-clean +lxml==5.2.2 + # via + # partseg (pyproject.toml) + # lxml-html-clean lxml-html-clean==0.1.1 # via lxml -magicgui==0.8.2 - # via napari +magicgui==0.8.3 + # via + # partseg (pyproject.toml) + # napari mahotas==1.4.15 + # via partseg (pyproject.toml) markdown-it-py==3.0.0 # via rich markupsafe==2.1.5 @@ -143,6 +166,7 @@ mdurl==0.1.2 mpmath==1.3.0 # via sympy napari==0.4.19.post1 + # via partseg (pyproject.toml) napari-console==0.0.9 # via napari napari-plugin-engine==0.2.0 @@ -156,10 +180,14 @@ nest-asyncio==1.6.0 networkx==3.3 # via scikit-image nme==0.1.8 + # via partseg (pyproject.toml) npe2==0.7.5 - # via napari + # via + # -r requirements/version_denylist.txt + # napari numpy==1.26.4 # via + # partseg (pyproject.toml) # czifile # dask # h5py @@ -177,10 +205,13 @@ numpy==1.26.4 # vispy numpydoc==1.7.0 # via napari -oiffile==2023.8.30 -openpyxl==3.1.2 -packaging==24.0 +oiffile==2024.5.24 + # via partseg (pyproject.toml) +openpyxl==3.1.4 + # via partseg (pyproject.toml) +packaging==24.1 # via + # partseg (pyproject.toml) # build # dask # ipykernel @@ -196,13 +227,17 @@ packaging==24.0 # sphinx # vispy pandas==2.2.2 - # via napari + # via + # partseg (pyproject.toml) + # napari parso==0.8.4 # via jedi partd==1.4.2 # via dask partsegcore-compiled-backend==0.15.6 + # via partseg (pyproject.toml) partsegdata==0.10.0 + # via partseg (pyproject.toml) pexpect==4.9.0 # via ipython pillow==10.3.0 @@ -210,9 +245,9 @@ pillow==10.3.0 # imageio # napari # scikit-image -pint==0.23 +pint==0.24 # via napari -platformdirs==4.2.1 +platformdirs==4.2.2 # via # jupyter-core # pooch @@ -220,9 +255,9 @@ pluggy==1.5.0 # via # pytest # pytest-qt -pooch==1.8.1 +pooch==1.8.2 # via scikit-image -prompt-toolkit==3.0.43 +prompt-toolkit==3.0.47 # via ipython psutil==5.9.8 # via @@ -230,6 +265,7 @@ psutil==5.9.8 # napari psygnal==0.11.1 # via + # partseg (pyproject.toml) # app-model # magicgui # napari @@ -240,56 +276,75 @@ pure-eval==0.2.2 # via stack-data pyconify==0.1.6 # via superqt -pydantic==2.7.1 +pydantic==2.7.4 # via + # partseg (pyproject.toml) # app-model # napari # npe2 # pydantic-compat pydantic-compat==0.1.2 # via app-model -pydantic-core==2.18.2 +pydantic-core==2.18.4 # via pydantic pygments==2.18.0 # via + # partseg (pyproject.toml) # ipython # napari # qtconsole # rich # sphinx # superqt -pyinstaller==6.6.0 -pyinstaller-hooks-contrib==2024.5 +pyinstaller==6.8.0 + # via partseg (pyproject.toml) +pyinstaller-hooks-contrib==2024.7 # via pyinstaller pyopengl==3.1.7 # via napari pyopengl-accelerate==3.1.7 + # via partseg (pyproject.toml) pyproject-hooks==1.1.0 # via build pyqt5==5.15.10 + # via + # -r requirements/version_denylist.txt + # partseg (pyproject.toml) pyqt5-qt5==5.15.2 # via pyqt5 pyqt5-sip==12.13.0 - # via pyqt5 + # via + # -r requirements/version_denylist.txt + # pyqt5 pyqt6==6.7.0 -pyqt6-qt6==6.7.0 + # via partseg (pyproject.toml) +pyqt6-qt6==6.7.1 # via pyqt6 pyqt6-sip==13.6.0 # via pyqt6 pyside2==5.15.2.1 -pyside6==6.7.0 -pyside6-addons==6.7.0 + # via + # -r requirements/version_denylist.txt + # partseg (pyproject.toml) +pyside6==6.7.1 + # via + # -r requirements/version_denylist.txt + # partseg (pyproject.toml) +pyside6-addons==6.7.1 # via pyside6 -pyside6-essentials==6.7.0 +pyside6-essentials==6.7.1 # via # pyside6 # pyside6-addons -pytest==8.2.0 +pytest==8.2.2 # via + # partseg (pyproject.toml) # pytest-qt # pytest-timeout pytest-qt==4.4.0 + # via partseg (pyproject.toml) pytest-timeout==2.3.1 + # via partseg (pyproject.toml) python-dateutil==2.9.0.post0 # via # jupyter-client @@ -307,10 +362,14 @@ pyzmq==26.0.3 # jupyter-client # qtconsole qtawesome==1.3.1 + # via partseg (pyproject.toml) qtconsole==5.5.2 - # via napari-console + # via + # partseg (pyproject.toml) + # napari-console qtpy==2.4.1 # via + # partseg (pyproject.toml) # magicgui # napari # napari-console @@ -321,8 +380,9 @@ referencing==0.35.1 # via # jsonschema # jsonschema-specifications -requests==2.31.0 +requests==2.32.3 # via + # partseg (pyproject.toml) # pooch # pyconify # sphinx @@ -335,13 +395,19 @@ rpds-py==0.18.1 # jsonschema # referencing scikit-image==0.23.2 - # via napari -scipy==1.13.0 # via + # partseg (pyproject.toml) + # napari +scipy==1.13.1 + # via + # partseg (pyproject.toml) # napari # scikit-image -sentry-sdk==2.1.1 -setuptools==69.5.1 +sentry-sdk==2.5.1 + # via + # -r requirements/version_denylist.txt + # partseg (pyproject.toml) +setuptools==70.0.0 # via # pyinstaller # pyinstaller-hooks-contrib @@ -349,14 +415,16 @@ shellingham==1.5.4 # via typer shiboken2==5.15.2.1 # via pyside2 -shiboken6==6.7.0 +shiboken6==6.7.1 # via # pyside6 # pyside6-addons # pyside6-essentials simpleitk==2.3.1 + # via partseg (pyproject.toml) six==1.16.0 # via + # partseg (pyproject.toml) # asttokens # python-dateutil snowballstemmer==2.2.0 @@ -377,15 +445,18 @@ sphinxcontrib-serializinghtml==1.1.10 # via sphinx stack-data==0.6.3 # via ipython -superqt==0.6.5 +superqt==0.6.7 # via + # partseg (pyproject.toml) # magicgui # napari -sympy==1.12 +sympy==1.12.1 + # via partseg (pyproject.toml) tabulate==0.9.0 # via numpydoc -tifffile==2024.5.3 +tifffile==2024.5.22 # via + # partseg (pyproject.toml) # czifile # napari # oiffile @@ -404,13 +475,14 @@ toolz==0.12.1 # dask # napari # partd -tornado==6.4 +tornado==6.4.1 # via # ipykernel # jupyter-client tqdm==4.66.4 # via napari traceback-with-variables==2.0.4 + # via partseg (pyproject.toml) traitlets==5.14.3 # via # comm @@ -422,9 +494,11 @@ traitlets==5.14.3 # qtconsole typer==0.12.3 # via npe2 -typing-extensions==4.11.0 +typing-extensions==4.12.2 # via # app-model + # flexcache + # flexparser # ipython # magicgui # napari @@ -435,12 +509,13 @@ typing-extensions==4.11.0 # typer tzdata==2024.1 # via pandas -urllib3==2.2.1 +urllib3==2.2.2 # via # requests # sentry-sdk -vispy==0.14.2 +vispy==0.14.3 # via + # partseg (pyproject.toml) # napari # napari-svg wcwidth==0.2.13 @@ -448,6 +523,8 @@ wcwidth==0.2.13 wrapt==1.16.0 # via napari xlrd==2.0.1 + # via partseg (pyproject.toml) xlsxwriter==3.2.0 -zipp==3.18.1 + # via partseg (pyproject.toml) +zipp==3.19.2 # via importlib-metadata diff --git a/requirements/constraints_py3.10_pydantic_1.txt b/requirements/constraints_py3.10_pydantic_1.txt index 073c48246..7dc868eb7 100644 --- a/requirements/constraints_py3.10_pydantic_1.txt +++ b/requirements/constraints_py3.10_pydantic_1.txt @@ -4,12 +4,14 @@ alabaster==0.7.16 # via sphinx altgraph==0.17.4 # via pyinstaller -app-model==0.2.6 +app-model==0.2.7 # via napari appdirs==1.4.4 # via + # partseg (pyproject.toml) # napari # npe2 + # pint asttokens==2.4.1 # via stack-data attrs==23.2.0 @@ -22,7 +24,7 @@ build==1.2.1 # via npe2 cachey==0.2.1 # via napari -certifi==2024.2.2 +certifi==2024.6.2 # via # napari # requests @@ -37,15 +39,18 @@ cloudpickle==3.0.0 # via dask comm==0.2.2 # via ipykernel -coverage==7.5.1 +coverage==7.5.3 + # via partseg (pyproject.toml) czifile==2019.7.2 -dask==2024.5.0 + # via partseg (pyproject.toml) +dask==2024.6.0 # via napari debugpy==1.8.1 # via ipykernel decorator==5.1.1 # via ipython defusedxml==0.7.1 + # via partseg (pyproject.toml) docstring-parser==0.16 # via magicgui docutils==0.21.2 @@ -58,21 +63,30 @@ exceptiongroup==1.2.1 # pytest executing==2.0.1 # via stack-data +flexcache==0.3 + # via pint +flexparser==0.3.1 + # via pint fonticon-fontawesome6==6.4.0 + # via partseg (pyproject.toml) freetype-py==2.4.0 # via vispy -fsspec==2024.3.1 +fsspec==2024.6.0 # via dask h5py==3.11.0 + # via partseg (pyproject.toml) heapdict==1.0.1 # via cachey hsluv==5.0.4 # via vispy idna==3.7 # via requests -imagecodecs==2024.1.1 +imagecodecs==2024.6.1 + # via partseg (pyproject.toml) imageio==2.34.1 # via + # -r requirements/version_denylist.txt + # partseg (pyproject.toml) # napari # napari-svg # scikit-image @@ -88,10 +102,12 @@ iniconfig==2.0.0 # via pytest ipykernel==6.29.4 # via + # partseg (pyproject.toml) # napari-console # qtconsole -ipython==8.24.0 +ipython==8.25.0 # via + # partseg (pyproject.toml) # ipykernel # napari-console jedi==0.19.1 @@ -102,7 +118,7 @@ jsonschema==4.22.0 # via napari jsonschema-specifications==2023.12.1 # via jsonschema -jupyter-client==8.6.1 +jupyter-client==8.6.2 # via # ipykernel # qtconsole @@ -118,16 +134,23 @@ lazy-loader==0.4 # napari # scikit-image local-migrator==0.1.10 - # via nme + # via + # partseg (pyproject.toml) + # nme locket==1.0.0 # via partd -lxml==5.2.1 - # via lxml-html-clean +lxml==5.2.2 + # via + # partseg (pyproject.toml) + # lxml-html-clean lxml-html-clean==0.1.1 # via lxml -magicgui==0.8.2 - # via napari +magicgui==0.8.3 + # via + # partseg (pyproject.toml) + # napari mahotas==1.4.15 + # via partseg (pyproject.toml) markdown-it-py==3.0.0 # via rich markupsafe==2.1.5 @@ -141,6 +164,7 @@ mdurl==0.1.2 mpmath==1.3.0 # via sympy napari==0.4.19.post1 + # via partseg (pyproject.toml) napari-console==0.0.9 # via napari napari-plugin-engine==0.2.0 @@ -154,10 +178,14 @@ nest-asyncio==1.6.0 networkx==3.3 # via scikit-image nme==0.1.8 + # via partseg (pyproject.toml) npe2==0.7.5 - # via napari + # via + # -r requirements/version_denylist.txt + # napari numpy==1.26.4 # via + # partseg (pyproject.toml) # czifile # dask # h5py @@ -175,10 +203,13 @@ numpy==1.26.4 # vispy numpydoc==1.7.0 # via napari -oiffile==2023.8.30 -openpyxl==3.1.2 -packaging==24.0 +oiffile==2024.5.24 + # via partseg (pyproject.toml) +openpyxl==3.1.4 + # via partseg (pyproject.toml) +packaging==24.1 # via + # partseg (pyproject.toml) # build # dask # ipykernel @@ -194,13 +225,17 @@ packaging==24.0 # sphinx # vispy pandas==2.2.2 - # via napari + # via + # partseg (pyproject.toml) + # napari parso==0.8.4 # via jedi partd==1.4.2 # via dask partsegcore-compiled-backend==0.15.6 + # via partseg (pyproject.toml) partsegdata==0.10.0 + # via partseg (pyproject.toml) pexpect==4.9.0 # via ipython pillow==10.3.0 @@ -208,9 +243,9 @@ pillow==10.3.0 # imageio # napari # scikit-image -pint==0.23 +pint==0.24 # via napari -platformdirs==4.2.1 +platformdirs==4.2.2 # via # jupyter-core # pooch @@ -218,9 +253,9 @@ pluggy==1.5.0 # via # pytest # pytest-qt -pooch==1.8.1 +pooch==1.8.2 # via scikit-image -prompt-toolkit==3.0.43 +prompt-toolkit==3.0.47 # via ipython psutil==5.9.8 # via @@ -228,6 +263,7 @@ psutil==5.9.8 # napari psygnal==0.11.1 # via + # partseg (pyproject.toml) # app-model # magicgui # napari @@ -238,8 +274,10 @@ pure-eval==0.2.2 # via stack-data pyconify==0.1.6 # via superqt -pydantic==1.10.15 +pydantic==1.10.16 # via + # -c requirements/pydantic_1.txt + # partseg (pyproject.toml) # app-model # napari # npe2 @@ -248,44 +286,62 @@ pydantic-compat==0.1.2 # via app-model pygments==2.18.0 # via + # partseg (pyproject.toml) # ipython # napari # qtconsole # rich # sphinx # superqt -pyinstaller==6.6.0 -pyinstaller-hooks-contrib==2024.5 +pyinstaller==6.8.0 + # via partseg (pyproject.toml) +pyinstaller-hooks-contrib==2024.7 # via pyinstaller pyopengl==3.1.7 # via napari pyopengl-accelerate==3.1.7 + # via partseg (pyproject.toml) pyproject-hooks==1.1.0 # via build pyqt5==5.15.10 + # via + # -r requirements/version_denylist.txt + # partseg (pyproject.toml) pyqt5-qt5==5.15.2 # via pyqt5 pyqt5-sip==12.13.0 - # via pyqt5 + # via + # -r requirements/version_denylist.txt + # pyqt5 pyqt6==6.7.0 -pyqt6-qt6==6.7.0 + # via partseg (pyproject.toml) +pyqt6-qt6==6.7.1 # via pyqt6 pyqt6-sip==13.6.0 # via pyqt6 pyside2==5.15.2.1 -pyside6==6.7.0 -pyside6-addons==6.7.0 + # via + # -r requirements/version_denylist.txt + # partseg (pyproject.toml) +pyside6==6.7.1 + # via + # -r requirements/version_denylist.txt + # partseg (pyproject.toml) +pyside6-addons==6.7.1 # via pyside6 -pyside6-essentials==6.7.0 +pyside6-essentials==6.7.1 # via # pyside6 # pyside6-addons -pytest==8.2.0 +pytest==8.2.2 # via + # partseg (pyproject.toml) # pytest-qt # pytest-timeout pytest-qt==4.4.0 + # via partseg (pyproject.toml) pytest-timeout==2.3.1 + # via partseg (pyproject.toml) python-dateutil==2.9.0.post0 # via # jupyter-client @@ -303,10 +359,14 @@ pyzmq==26.0.3 # jupyter-client # qtconsole qtawesome==1.3.1 + # via partseg (pyproject.toml) qtconsole==5.5.2 - # via napari-console + # via + # partseg (pyproject.toml) + # napari-console qtpy==2.4.1 # via + # partseg (pyproject.toml) # magicgui # napari # napari-console @@ -317,8 +377,9 @@ referencing==0.35.1 # via # jsonschema # jsonschema-specifications -requests==2.31.0 +requests==2.32.3 # via + # partseg (pyproject.toml) # pooch # pyconify # sphinx @@ -331,13 +392,19 @@ rpds-py==0.18.1 # jsonschema # referencing scikit-image==0.23.2 - # via napari -scipy==1.13.0 # via + # partseg (pyproject.toml) + # napari +scipy==1.13.1 + # via + # partseg (pyproject.toml) # napari # scikit-image -sentry-sdk==2.1.1 -setuptools==69.5.1 +sentry-sdk==2.5.1 + # via + # -r requirements/version_denylist.txt + # partseg (pyproject.toml) +setuptools==70.0.0 # via # pyinstaller # pyinstaller-hooks-contrib @@ -345,14 +412,16 @@ shellingham==1.5.4 # via typer shiboken2==5.15.2.1 # via pyside2 -shiboken6==6.7.0 +shiboken6==6.7.1 # via # pyside6 # pyside6-addons # pyside6-essentials simpleitk==2.3.1 + # via partseg (pyproject.toml) six==1.16.0 # via + # partseg (pyproject.toml) # asttokens # python-dateutil snowballstemmer==2.2.0 @@ -373,15 +442,18 @@ sphinxcontrib-serializinghtml==1.1.10 # via sphinx stack-data==0.6.3 # via ipython -superqt==0.6.5 +superqt==0.6.7 # via + # partseg (pyproject.toml) # magicgui # napari -sympy==1.12 +sympy==1.12.1 + # via partseg (pyproject.toml) tabulate==0.9.0 # via numpydoc -tifffile==2024.5.3 +tifffile==2024.5.22 # via + # partseg (pyproject.toml) # czifile # napari # oiffile @@ -400,13 +472,14 @@ toolz==0.12.1 # dask # napari # partd -tornado==6.4 +tornado==6.4.1 # via # ipykernel # jupyter-client tqdm==4.66.4 # via napari traceback-with-variables==2.0.4 + # via partseg (pyproject.toml) traitlets==5.14.3 # via # comm @@ -418,9 +491,11 @@ traitlets==5.14.3 # qtconsole typer==0.12.3 # via npe2 -typing-extensions==4.11.0 +typing-extensions==4.12.2 # via # app-model + # flexcache + # flexparser # ipython # magicgui # napari @@ -430,12 +505,13 @@ typing-extensions==4.11.0 # typer tzdata==2024.1 # via pandas -urllib3==2.2.1 +urllib3==2.2.2 # via # requests # sentry-sdk -vispy==0.14.2 +vispy==0.14.3 # via + # partseg (pyproject.toml) # napari # napari-svg wcwidth==0.2.13 @@ -443,6 +519,8 @@ wcwidth==0.2.13 wrapt==1.16.0 # via napari xlrd==2.0.1 + # via partseg (pyproject.toml) xlsxwriter==3.2.0 -zipp==3.18.1 + # via partseg (pyproject.toml) +zipp==3.19.2 # via importlib-metadata diff --git a/requirements/constraints_py3.11.txt b/requirements/constraints_py3.11.txt index 537cef27c..d2e2420f9 100644 --- a/requirements/constraints_py3.11.txt +++ b/requirements/constraints_py3.11.txt @@ -4,14 +4,16 @@ alabaster==0.7.16 # via sphinx altgraph==0.17.4 # via pyinstaller -annotated-types==0.6.0 +annotated-types==0.7.0 # via pydantic -app-model==0.2.6 +app-model==0.2.7 # via napari appdirs==1.4.4 # via + # partseg (pyproject.toml) # napari # npe2 + # pint asttokens==2.4.1 # via stack-data attrs==23.2.0 @@ -24,7 +26,7 @@ build==1.2.1 # via npe2 cachey==0.2.1 # via napari -certifi==2024.2.2 +certifi==2024.6.2 # via # napari # requests @@ -39,15 +41,18 @@ cloudpickle==3.0.0 # via dask comm==0.2.2 # via ipykernel -coverage==7.5.1 +coverage==7.5.3 + # via partseg (pyproject.toml) czifile==2019.7.2 -dask==2024.5.0 + # via partseg (pyproject.toml) +dask==2024.6.0 # via napari debugpy==1.8.1 # via ipykernel decorator==5.1.1 # via ipython defusedxml==0.7.1 + # via partseg (pyproject.toml) docstring-parser==0.16 # via magicgui docutils==0.21.2 @@ -56,21 +61,30 @@ et-xmlfile==1.1.0 # via openpyxl executing==2.0.1 # via stack-data +flexcache==0.3 + # via pint +flexparser==0.3.1 + # via pint fonticon-fontawesome6==6.4.0 + # via partseg (pyproject.toml) freetype-py==2.4.0 # via vispy -fsspec==2024.3.1 +fsspec==2024.6.0 # via dask h5py==3.11.0 + # via partseg (pyproject.toml) heapdict==1.0.1 # via cachey hsluv==5.0.4 # via vispy idna==3.7 # via requests -imagecodecs==2024.1.1 +imagecodecs==2024.6.1 + # via partseg (pyproject.toml) imageio==2.34.1 # via + # -r requirements/version_denylist.txt + # partseg (pyproject.toml) # napari # napari-svg # scikit-image @@ -84,10 +98,12 @@ iniconfig==2.0.0 # via pytest ipykernel==6.29.4 # via + # partseg (pyproject.toml) # napari-console # qtconsole -ipython==8.24.0 +ipython==8.25.0 # via + # partseg (pyproject.toml) # ipykernel # napari-console jedi==0.19.1 @@ -98,7 +114,7 @@ jsonschema==4.22.0 # via napari jsonschema-specifications==2023.12.1 # via jsonschema -jupyter-client==8.6.1 +jupyter-client==8.6.2 # via # ipykernel # qtconsole @@ -114,16 +130,23 @@ lazy-loader==0.4 # napari # scikit-image local-migrator==0.1.10 - # via nme + # via + # partseg (pyproject.toml) + # nme locket==1.0.0 # via partd -lxml==5.2.1 - # via lxml-html-clean +lxml==5.2.2 + # via + # partseg (pyproject.toml) + # lxml-html-clean lxml-html-clean==0.1.1 # via lxml -magicgui==0.8.2 - # via napari +magicgui==0.8.3 + # via + # partseg (pyproject.toml) + # napari mahotas==1.4.15 + # via partseg (pyproject.toml) markdown-it-py==3.0.0 # via rich markupsafe==2.1.5 @@ -137,6 +160,7 @@ mdurl==0.1.2 mpmath==1.3.0 # via sympy napari==0.4.19.post1 + # via partseg (pyproject.toml) napari-console==0.0.9 # via napari napari-plugin-engine==0.2.0 @@ -150,10 +174,14 @@ nest-asyncio==1.6.0 networkx==3.3 # via scikit-image nme==0.1.8 + # via partseg (pyproject.toml) npe2==0.7.5 - # via napari + # via + # -r requirements/version_denylist.txt + # napari numpy==1.26.4 # via + # partseg (pyproject.toml) # czifile # dask # h5py @@ -171,10 +199,13 @@ numpy==1.26.4 # vispy numpydoc==1.7.0 # via napari -oiffile==2023.8.30 -openpyxl==3.1.2 -packaging==24.0 +oiffile==2024.5.24 + # via partseg (pyproject.toml) +openpyxl==3.1.4 + # via partseg (pyproject.toml) +packaging==24.1 # via + # partseg (pyproject.toml) # build # dask # ipykernel @@ -190,13 +221,17 @@ packaging==24.0 # sphinx # vispy pandas==2.2.2 - # via napari + # via + # partseg (pyproject.toml) + # napari parso==0.8.4 # via jedi partd==1.4.2 # via dask partsegcore-compiled-backend==0.15.6 + # via partseg (pyproject.toml) partsegdata==0.10.0 + # via partseg (pyproject.toml) pexpect==4.9.0 # via ipython pillow==10.3.0 @@ -204,9 +239,9 @@ pillow==10.3.0 # imageio # napari # scikit-image -pint==0.23 +pint==0.24 # via napari -platformdirs==4.2.1 +platformdirs==4.2.2 # via # jupyter-core # pooch @@ -214,9 +249,9 @@ pluggy==1.5.0 # via # pytest # pytest-qt -pooch==1.8.1 +pooch==1.8.2 # via scikit-image -prompt-toolkit==3.0.43 +prompt-toolkit==3.0.47 # via ipython psutil==5.9.8 # via @@ -224,6 +259,7 @@ psutil==5.9.8 # napari psygnal==0.11.1 # via + # partseg (pyproject.toml) # app-model # magicgui # napari @@ -234,56 +270,75 @@ pure-eval==0.2.2 # via stack-data pyconify==0.1.6 # via superqt -pydantic==2.7.1 +pydantic==2.7.4 # via + # partseg (pyproject.toml) # app-model # napari # npe2 # pydantic-compat pydantic-compat==0.1.2 # via app-model -pydantic-core==2.18.2 +pydantic-core==2.18.4 # via pydantic pygments==2.18.0 # via + # partseg (pyproject.toml) # ipython # napari # qtconsole # rich # sphinx # superqt -pyinstaller==6.6.0 -pyinstaller-hooks-contrib==2024.5 +pyinstaller==6.8.0 + # via partseg (pyproject.toml) +pyinstaller-hooks-contrib==2024.7 # via pyinstaller pyopengl==3.1.7 # via napari pyopengl-accelerate==3.1.7 + # via partseg (pyproject.toml) pyproject-hooks==1.1.0 # via build pyqt5==5.15.10 + # via + # -r requirements/version_denylist.txt + # partseg (pyproject.toml) pyqt5-qt5==5.15.2 # via pyqt5 pyqt5-sip==12.13.0 - # via pyqt5 + # via + # -r requirements/version_denylist.txt + # pyqt5 pyqt6==6.7.0 -pyqt6-qt6==6.7.0 + # via partseg (pyproject.toml) +pyqt6-qt6==6.7.1 # via pyqt6 pyqt6-sip==13.6.0 # via pyqt6 pyside2==5.13.2 -pyside6==6.7.0 -pyside6-addons==6.7.0 + # via + # -r requirements/version_denylist.txt + # partseg (pyproject.toml) +pyside6==6.7.1 + # via + # -r requirements/version_denylist.txt + # partseg (pyproject.toml) +pyside6-addons==6.7.1 # via pyside6 -pyside6-essentials==6.7.0 +pyside6-essentials==6.7.1 # via # pyside6 # pyside6-addons -pytest==8.2.0 +pytest==8.2.2 # via + # partseg (pyproject.toml) # pytest-qt # pytest-timeout pytest-qt==4.4.0 + # via partseg (pyproject.toml) pytest-timeout==2.3.1 + # via partseg (pyproject.toml) python-dateutil==2.9.0.post0 # via # jupyter-client @@ -301,10 +356,14 @@ pyzmq==26.0.3 # jupyter-client # qtconsole qtawesome==1.3.1 + # via partseg (pyproject.toml) qtconsole==5.5.2 - # via napari-console + # via + # partseg (pyproject.toml) + # napari-console qtpy==2.4.1 # via + # partseg (pyproject.toml) # magicgui # napari # napari-console @@ -315,8 +374,9 @@ referencing==0.35.1 # via # jsonschema # jsonschema-specifications -requests==2.31.0 +requests==2.32.3 # via + # partseg (pyproject.toml) # pooch # pyconify # sphinx @@ -329,13 +389,19 @@ rpds-py==0.18.1 # jsonschema # referencing scikit-image==0.23.2 - # via napari -scipy==1.13.0 # via + # partseg (pyproject.toml) + # napari +scipy==1.13.1 + # via + # partseg (pyproject.toml) # napari # scikit-image -sentry-sdk==2.1.1 -setuptools==69.5.1 +sentry-sdk==2.5.1 + # via + # -r requirements/version_denylist.txt + # partseg (pyproject.toml) +setuptools==70.0.0 # via # pyinstaller # pyinstaller-hooks-contrib @@ -343,14 +409,16 @@ shellingham==1.5.4 # via typer shiboken2==5.13.2 # via pyside2 -shiboken6==6.7.0 +shiboken6==6.7.1 # via # pyside6 # pyside6-addons # pyside6-essentials simpleitk==2.3.1 + # via partseg (pyproject.toml) six==1.16.0 # via + # partseg (pyproject.toml) # asttokens # python-dateutil snowballstemmer==2.2.0 @@ -371,15 +439,18 @@ sphinxcontrib-serializinghtml==1.1.10 # via sphinx stack-data==0.6.3 # via ipython -superqt==0.6.5 +superqt==0.6.7 # via + # partseg (pyproject.toml) # magicgui # napari -sympy==1.12 +sympy==1.12.1 + # via partseg (pyproject.toml) tabulate==0.9.0 # via numpydoc -tifffile==2024.5.3 +tifffile==2024.5.22 # via + # partseg (pyproject.toml) # czifile # napari # oiffile @@ -391,13 +462,14 @@ toolz==0.12.1 # dask # napari # partd -tornado==6.4 +tornado==6.4.1 # via # ipykernel # jupyter-client tqdm==4.66.4 # via napari traceback-with-variables==2.0.4 + # via partseg (pyproject.toml) traitlets==5.14.3 # via # comm @@ -409,9 +481,11 @@ traitlets==5.14.3 # qtconsole typer==0.12.3 # via npe2 -typing-extensions==4.11.0 +typing-extensions==4.12.2 # via # app-model + # flexcache + # flexparser # ipython # magicgui # napari @@ -422,12 +496,13 @@ typing-extensions==4.11.0 # typer tzdata==2024.1 # via pandas -urllib3==2.2.1 +urllib3==2.2.2 # via # requests # sentry-sdk -vispy==0.14.2 +vispy==0.14.3 # via + # partseg (pyproject.toml) # napari # napari-svg wcwidth==0.2.13 @@ -435,6 +510,8 @@ wcwidth==0.2.13 wrapt==1.16.0 # via napari xlrd==2.0.1 + # via partseg (pyproject.toml) xlsxwriter==3.2.0 -zipp==3.18.1 + # via partseg (pyproject.toml) +zipp==3.19.2 # via importlib-metadata diff --git a/requirements/constraints_py3.11_docs.txt b/requirements/constraints_py3.11_docs.txt index c5ca95df6..e7695e302 100644 --- a/requirements/constraints_py3.11_docs.txt +++ b/requirements/constraints_py3.11_docs.txt @@ -2,14 +2,16 @@ # uv pip compile --python-version 3.11 --output-file requirements/constraints_py3.11_docs.txt pyproject.toml requirements/version_denylist.txt --extra docs --extra pyqt6 alabaster==0.7.16 # via sphinx -annotated-types==0.6.0 +annotated-types==0.7.0 # via pydantic -app-model==0.2.6 +app-model==0.2.7 # via napari appdirs==1.4.4 # via + # partseg (pyproject.toml) # napari # npe2 + # pint asttokens==2.4.1 # via stack-data attrs==23.2.0 @@ -17,13 +19,14 @@ attrs==23.2.0 # jsonschema # referencing autodoc-pydantic==2.2.0 + # via partseg (pyproject.toml) babel==2.15.0 # via sphinx build==1.2.1 # via npe2 cachey==0.2.1 # via napari -certifi==2024.2.2 +certifi==2024.6.2 # via # napari # requests @@ -39,13 +42,15 @@ cloudpickle==3.0.0 comm==0.2.2 # via ipykernel czifile==2019.7.2 -dask==2024.5.0 + # via partseg (pyproject.toml) +dask==2024.6.0 # via napari debugpy==1.8.1 # via ipykernel decorator==5.1.1 # via ipython defusedxml==0.7.1 + # via partseg (pyproject.toml) docstring-parser==0.16 # via magicgui docutils==0.21.2 @@ -56,21 +61,30 @@ et-xmlfile==1.1.0 # via openpyxl executing==2.0.1 # via stack-data +flexcache==0.3 + # via pint +flexparser==0.3.1 + # via pint fonticon-fontawesome6==6.4.0 + # via partseg (pyproject.toml) freetype-py==2.4.0 # via vispy -fsspec==2024.3.1 +fsspec==2024.6.0 # via dask h5py==3.11.0 + # via partseg (pyproject.toml) heapdict==1.0.1 # via cachey hsluv==5.0.4 # via vispy idna==3.7 # via requests -imagecodecs==2024.1.1 +imagecodecs==2024.6.1 + # via partseg (pyproject.toml) imageio==2.34.1 # via + # -r requirements/version_denylist.txt + # partseg (pyproject.toml) # napari # napari-svg # scikit-image @@ -82,10 +96,12 @@ in-n-out==0.2.1 # via app-model ipykernel==6.29.4 # via + # partseg (pyproject.toml) # napari-console # qtconsole -ipython==8.24.0 +ipython==8.25.0 # via + # partseg (pyproject.toml) # ipykernel # napari-console jedi==0.19.1 @@ -96,7 +112,7 @@ jsonschema==4.22.0 # via napari jsonschema-specifications==2023.12.1 # via jsonschema -jupyter-client==8.6.1 +jupyter-client==8.6.2 # via # ipykernel # qtconsole @@ -112,12 +128,17 @@ lazy-loader==0.4 # napari # scikit-image local-migrator==0.1.10 - # via nme + # via + # partseg (pyproject.toml) + # nme locket==1.0.0 # via partd -magicgui==0.8.2 - # via napari +magicgui==0.8.3 + # via + # partseg (pyproject.toml) + # napari mahotas==1.4.15 + # via partseg (pyproject.toml) markdown-it-py==3.0.0 # via rich markupsafe==2.1.5 @@ -131,6 +152,7 @@ mdurl==0.1.2 mpmath==1.3.0 # via sympy napari==0.4.19.post1 + # via partseg (pyproject.toml) napari-console==0.0.9 # via napari napari-plugin-engine==0.2.0 @@ -144,10 +166,14 @@ nest-asyncio==1.6.0 networkx==3.3 # via scikit-image nme==0.1.8 + # via partseg (pyproject.toml) npe2==0.7.5 - # via napari + # via + # -r requirements/version_denylist.txt + # napari numpy==1.26.4 # via + # partseg (pyproject.toml) # czifile # dask # h5py @@ -165,10 +191,13 @@ numpy==1.26.4 # vispy numpydoc==1.7.0 # via napari -oiffile==2023.8.30 -openpyxl==3.1.2 -packaging==24.0 +oiffile==2024.5.24 + # via partseg (pyproject.toml) +openpyxl==3.1.4 + # via partseg (pyproject.toml) +packaging==24.1 # via + # partseg (pyproject.toml) # build # dask # ipykernel @@ -181,13 +210,17 @@ packaging==24.0 # sphinx # vispy pandas==2.2.2 - # via napari + # via + # partseg (pyproject.toml) + # napari parso==0.8.4 # via jedi partd==1.4.2 # via dask partsegcore-compiled-backend==0.15.6 + # via partseg (pyproject.toml) partsegdata==0.10.0 + # via partseg (pyproject.toml) pexpect==4.9.0 # via ipython pillow==10.3.0 @@ -195,15 +228,15 @@ pillow==10.3.0 # imageio # napari # scikit-image -pint==0.23 +pint==0.24 # via napari -platformdirs==4.2.1 +platformdirs==4.2.2 # via # jupyter-core # pooch -pooch==1.8.1 +pooch==1.8.2 # via scikit-image -prompt-toolkit==3.0.43 +prompt-toolkit==3.0.47 # via ipython psutil==5.9.8 # via @@ -211,6 +244,7 @@ psutil==5.9.8 # napari psygnal==0.11.1 # via + # partseg (pyproject.toml) # app-model # magicgui # napari @@ -221,8 +255,9 @@ pure-eval==0.2.2 # via stack-data pyconify==0.1.6 # via superqt -pydantic==2.7.1 +pydantic==2.7.4 # via + # partseg (pyproject.toml) # app-model # autodoc-pydantic # napari @@ -231,12 +266,13 @@ pydantic==2.7.1 # pydantic-settings pydantic-compat==0.1.2 # via app-model -pydantic-core==2.18.2 +pydantic-core==2.18.4 # via pydantic -pydantic-settings==2.2.1 +pydantic-settings==2.3.3 # via autodoc-pydantic pygments==2.18.0 # via + # partseg (pyproject.toml) # ipython # napari # qtconsole @@ -248,20 +284,26 @@ pyopengl==3.1.7 pyproject-hooks==1.1.0 # via build pyqt5==5.15.10 + # via -r requirements/version_denylist.txt pyqt5-qt5==5.15.2 # via pyqt5 pyqt5-sip==12.13.0 - # via pyqt5 + # via + # -r requirements/version_denylist.txt + # pyqt5 pyqt6==6.7.0 -pyqt6-qt6==6.7.0 + # via partseg (pyproject.toml) +pyqt6-qt6==6.7.1 # via pyqt6 pyqt6-sip==13.6.0 # via pyqt6 pyside2==5.13.2 -pyside6==6.7.0 -pyside6-addons==6.7.0 + # via -r requirements/version_denylist.txt +pyside6==6.7.1 + # via -r requirements/version_denylist.txt +pyside6-addons==6.7.1 # via pyside6 -pyside6-essentials==6.7.0 +pyside6-essentials==6.7.1 # via # pyside6 # pyside6-addons @@ -284,10 +326,14 @@ pyzmq==26.0.3 # jupyter-client # qtconsole qtawesome==1.3.1 + # via partseg (pyproject.toml) qtconsole==5.5.2 - # via napari-console + # via + # partseg (pyproject.toml) + # napari-console qtpy==2.4.1 # via + # partseg (pyproject.toml) # magicgui # napari # napari-console @@ -298,8 +344,9 @@ referencing==0.35.1 # via # jsonschema # jsonschema-specifications -requests==2.31.0 +requests==2.32.3 # via + # partseg (pyproject.toml) # pooch # pyconify # sphinx @@ -313,35 +360,44 @@ rpds-py==0.18.1 # referencing scikit-image==0.23.2 # via napari -scipy==1.13.0 +scipy==1.13.1 # via + # partseg (pyproject.toml) # napari # scikit-image -sentry-sdk==2.1.1 +sentry-sdk==2.5.1 + # via + # -r requirements/version_denylist.txt + # partseg (pyproject.toml) shellingham==1.5.4 # via typer shiboken2==5.13.2 # via pyside2 -shiboken6==6.7.0 +shiboken6==6.7.1 # via # pyside6 # pyside6-addons # pyside6-essentials simpleitk==2.3.1 + # via partseg (pyproject.toml) six==1.16.0 # via + # partseg (pyproject.toml) # asttokens # python-dateutil snowballstemmer==2.2.0 # via sphinx sphinx==7.3.7 # via + # partseg (pyproject.toml) # autodoc-pydantic # numpydoc # sphinx-autodoc-typehints # sphinx-qt-documentation -sphinx-autodoc-typehints==2.1.0 +sphinx-autodoc-typehints==2.1.1 + # via partseg (pyproject.toml) sphinx-qt-documentation==0.4.1 + # via partseg (pyproject.toml) sphinxcontrib-applehelp==1.0.8 # via sphinx sphinxcontrib-devhelp==1.0.6 @@ -356,15 +412,18 @@ sphinxcontrib-serializinghtml==1.1.10 # via sphinx stack-data==0.6.3 # via ipython -superqt==0.6.5 +superqt==0.6.7 # via + # partseg (pyproject.toml) # magicgui # napari -sympy==1.12 +sympy==1.12.1 + # via partseg (pyproject.toml) tabulate==0.9.0 # via numpydoc -tifffile==2024.5.3 +tifffile==2024.5.22 # via + # partseg (pyproject.toml) # czifile # napari # oiffile @@ -376,13 +435,14 @@ toolz==0.12.1 # dask # napari # partd -tornado==6.4 +tornado==6.4.1 # via # ipykernel # jupyter-client tqdm==4.66.4 # via napari traceback-with-variables==2.0.4 + # via partseg (pyproject.toml) traitlets==5.14.3 # via # comm @@ -394,9 +454,11 @@ traitlets==5.14.3 # qtconsole typer==0.12.3 # via npe2 -typing-extensions==4.11.0 +typing-extensions==4.12.2 # via # app-model + # flexcache + # flexparser # ipython # magicgui # napari @@ -407,12 +469,13 @@ typing-extensions==4.11.0 # typer tzdata==2024.1 # via pandas -urllib3==2.2.1 +urllib3==2.2.2 # via # requests # sentry-sdk -vispy==0.14.2 +vispy==0.14.3 # via + # partseg (pyproject.toml) # napari # napari-svg wcwidth==0.2.13 @@ -420,6 +483,8 @@ wcwidth==0.2.13 wrapt==1.16.0 # via napari xlrd==2.0.1 + # via partseg (pyproject.toml) xlsxwriter==3.2.0 -zipp==3.18.1 + # via partseg (pyproject.toml) +zipp==3.19.2 # via importlib-metadata diff --git a/requirements/constraints_py3.11_pydantic_1.txt b/requirements/constraints_py3.11_pydantic_1.txt index 63b569f58..678f3da6c 100644 --- a/requirements/constraints_py3.11_pydantic_1.txt +++ b/requirements/constraints_py3.11_pydantic_1.txt @@ -4,12 +4,14 @@ alabaster==0.7.16 # via sphinx altgraph==0.17.4 # via pyinstaller -app-model==0.2.6 +app-model==0.2.7 # via napari appdirs==1.4.4 # via + # partseg (pyproject.toml) # napari # npe2 + # pint asttokens==2.4.1 # via stack-data attrs==23.2.0 @@ -22,7 +24,7 @@ build==1.2.1 # via npe2 cachey==0.2.1 # via napari -certifi==2024.2.2 +certifi==2024.6.2 # via # napari # requests @@ -37,15 +39,18 @@ cloudpickle==3.0.0 # via dask comm==0.2.2 # via ipykernel -coverage==7.5.1 +coverage==7.5.3 + # via partseg (pyproject.toml) czifile==2019.7.2 -dask==2024.5.0 + # via partseg (pyproject.toml) +dask==2024.6.0 # via napari debugpy==1.8.1 # via ipykernel decorator==5.1.1 # via ipython defusedxml==0.7.1 + # via partseg (pyproject.toml) docstring-parser==0.16 # via magicgui docutils==0.21.2 @@ -54,21 +59,30 @@ et-xmlfile==1.1.0 # via openpyxl executing==2.0.1 # via stack-data +flexcache==0.3 + # via pint +flexparser==0.3.1 + # via pint fonticon-fontawesome6==6.4.0 + # via partseg (pyproject.toml) freetype-py==2.4.0 # via vispy -fsspec==2024.3.1 +fsspec==2024.6.0 # via dask h5py==3.11.0 + # via partseg (pyproject.toml) heapdict==1.0.1 # via cachey hsluv==5.0.4 # via vispy idna==3.7 # via requests -imagecodecs==2024.1.1 +imagecodecs==2024.6.1 + # via partseg (pyproject.toml) imageio==2.34.1 # via + # -r requirements/version_denylist.txt + # partseg (pyproject.toml) # napari # napari-svg # scikit-image @@ -82,10 +96,12 @@ iniconfig==2.0.0 # via pytest ipykernel==6.29.4 # via + # partseg (pyproject.toml) # napari-console # qtconsole -ipython==8.24.0 +ipython==8.25.0 # via + # partseg (pyproject.toml) # ipykernel # napari-console jedi==0.19.1 @@ -96,7 +112,7 @@ jsonschema==4.22.0 # via napari jsonschema-specifications==2023.12.1 # via jsonschema -jupyter-client==8.6.1 +jupyter-client==8.6.2 # via # ipykernel # qtconsole @@ -112,16 +128,23 @@ lazy-loader==0.4 # napari # scikit-image local-migrator==0.1.10 - # via nme + # via + # partseg (pyproject.toml) + # nme locket==1.0.0 # via partd -lxml==5.2.1 - # via lxml-html-clean +lxml==5.2.2 + # via + # partseg (pyproject.toml) + # lxml-html-clean lxml-html-clean==0.1.1 # via lxml -magicgui==0.8.2 - # via napari +magicgui==0.8.3 + # via + # partseg (pyproject.toml) + # napari mahotas==1.4.15 + # via partseg (pyproject.toml) markdown-it-py==3.0.0 # via rich markupsafe==2.1.5 @@ -135,6 +158,7 @@ mdurl==0.1.2 mpmath==1.3.0 # via sympy napari==0.4.19.post1 + # via partseg (pyproject.toml) napari-console==0.0.9 # via napari napari-plugin-engine==0.2.0 @@ -148,10 +172,14 @@ nest-asyncio==1.6.0 networkx==3.3 # via scikit-image nme==0.1.8 + # via partseg (pyproject.toml) npe2==0.7.5 - # via napari + # via + # -r requirements/version_denylist.txt + # napari numpy==1.26.4 # via + # partseg (pyproject.toml) # czifile # dask # h5py @@ -169,10 +197,13 @@ numpy==1.26.4 # vispy numpydoc==1.7.0 # via napari -oiffile==2023.8.30 -openpyxl==3.1.2 -packaging==24.0 +oiffile==2024.5.24 + # via partseg (pyproject.toml) +openpyxl==3.1.4 + # via partseg (pyproject.toml) +packaging==24.1 # via + # partseg (pyproject.toml) # build # dask # ipykernel @@ -188,13 +219,17 @@ packaging==24.0 # sphinx # vispy pandas==2.2.2 - # via napari + # via + # partseg (pyproject.toml) + # napari parso==0.8.4 # via jedi partd==1.4.2 # via dask partsegcore-compiled-backend==0.15.6 + # via partseg (pyproject.toml) partsegdata==0.10.0 + # via partseg (pyproject.toml) pexpect==4.9.0 # via ipython pillow==10.3.0 @@ -202,9 +237,9 @@ pillow==10.3.0 # imageio # napari # scikit-image -pint==0.23 +pint==0.24 # via napari -platformdirs==4.2.1 +platformdirs==4.2.2 # via # jupyter-core # pooch @@ -212,9 +247,9 @@ pluggy==1.5.0 # via # pytest # pytest-qt -pooch==1.8.1 +pooch==1.8.2 # via scikit-image -prompt-toolkit==3.0.43 +prompt-toolkit==3.0.47 # via ipython psutil==5.9.8 # via @@ -222,6 +257,7 @@ psutil==5.9.8 # napari psygnal==0.11.1 # via + # partseg (pyproject.toml) # app-model # magicgui # napari @@ -232,8 +268,10 @@ pure-eval==0.2.2 # via stack-data pyconify==0.1.6 # via superqt -pydantic==1.10.15 +pydantic==1.10.16 # via + # -c requirements/pydantic_1.txt + # partseg (pyproject.toml) # app-model # napari # npe2 @@ -242,44 +280,62 @@ pydantic-compat==0.1.2 # via app-model pygments==2.18.0 # via + # partseg (pyproject.toml) # ipython # napari # qtconsole # rich # sphinx # superqt -pyinstaller==6.6.0 -pyinstaller-hooks-contrib==2024.5 +pyinstaller==6.8.0 + # via partseg (pyproject.toml) +pyinstaller-hooks-contrib==2024.7 # via pyinstaller pyopengl==3.1.7 # via napari pyopengl-accelerate==3.1.7 + # via partseg (pyproject.toml) pyproject-hooks==1.1.0 # via build pyqt5==5.15.10 + # via + # -r requirements/version_denylist.txt + # partseg (pyproject.toml) pyqt5-qt5==5.15.2 # via pyqt5 pyqt5-sip==12.13.0 - # via pyqt5 + # via + # -r requirements/version_denylist.txt + # pyqt5 pyqt6==6.7.0 -pyqt6-qt6==6.7.0 + # via partseg (pyproject.toml) +pyqt6-qt6==6.7.1 # via pyqt6 pyqt6-sip==13.6.0 # via pyqt6 pyside2==5.13.2 -pyside6==6.7.0 -pyside6-addons==6.7.0 + # via + # -r requirements/version_denylist.txt + # partseg (pyproject.toml) +pyside6==6.7.1 + # via + # -r requirements/version_denylist.txt + # partseg (pyproject.toml) +pyside6-addons==6.7.1 # via pyside6 -pyside6-essentials==6.7.0 +pyside6-essentials==6.7.1 # via # pyside6 # pyside6-addons -pytest==8.2.0 +pytest==8.2.2 # via + # partseg (pyproject.toml) # pytest-qt # pytest-timeout pytest-qt==4.4.0 + # via partseg (pyproject.toml) pytest-timeout==2.3.1 + # via partseg (pyproject.toml) python-dateutil==2.9.0.post0 # via # jupyter-client @@ -297,10 +353,14 @@ pyzmq==26.0.3 # jupyter-client # qtconsole qtawesome==1.3.1 + # via partseg (pyproject.toml) qtconsole==5.5.2 - # via napari-console + # via + # partseg (pyproject.toml) + # napari-console qtpy==2.4.1 # via + # partseg (pyproject.toml) # magicgui # napari # napari-console @@ -311,8 +371,9 @@ referencing==0.35.1 # via # jsonschema # jsonschema-specifications -requests==2.31.0 +requests==2.32.3 # via + # partseg (pyproject.toml) # pooch # pyconify # sphinx @@ -325,13 +386,19 @@ rpds-py==0.18.1 # jsonschema # referencing scikit-image==0.23.2 - # via napari -scipy==1.13.0 # via + # partseg (pyproject.toml) + # napari +scipy==1.13.1 + # via + # partseg (pyproject.toml) # napari # scikit-image -sentry-sdk==2.1.1 -setuptools==69.5.1 +sentry-sdk==2.5.1 + # via + # -r requirements/version_denylist.txt + # partseg (pyproject.toml) +setuptools==70.0.0 # via # pyinstaller # pyinstaller-hooks-contrib @@ -339,14 +406,16 @@ shellingham==1.5.4 # via typer shiboken2==5.13.2 # via pyside2 -shiboken6==6.7.0 +shiboken6==6.7.1 # via # pyside6 # pyside6-addons # pyside6-essentials simpleitk==2.3.1 + # via partseg (pyproject.toml) six==1.16.0 # via + # partseg (pyproject.toml) # asttokens # python-dateutil snowballstemmer==2.2.0 @@ -367,15 +436,18 @@ sphinxcontrib-serializinghtml==1.1.10 # via sphinx stack-data==0.6.3 # via ipython -superqt==0.6.5 +superqt==0.6.7 # via + # partseg (pyproject.toml) # magicgui # napari -sympy==1.12 +sympy==1.12.1 + # via partseg (pyproject.toml) tabulate==0.9.0 # via numpydoc -tifffile==2024.5.3 +tifffile==2024.5.22 # via + # partseg (pyproject.toml) # czifile # napari # oiffile @@ -387,13 +459,14 @@ toolz==0.12.1 # dask # napari # partd -tornado==6.4 +tornado==6.4.1 # via # ipykernel # jupyter-client tqdm==4.66.4 # via napari traceback-with-variables==2.0.4 + # via partseg (pyproject.toml) traitlets==5.14.3 # via # comm @@ -405,9 +478,11 @@ traitlets==5.14.3 # qtconsole typer==0.12.3 # via npe2 -typing-extensions==4.11.0 +typing-extensions==4.12.2 # via # app-model + # flexcache + # flexparser # ipython # magicgui # napari @@ -417,12 +492,13 @@ typing-extensions==4.11.0 # typer tzdata==2024.1 # via pandas -urllib3==2.2.1 +urllib3==2.2.2 # via # requests # sentry-sdk -vispy==0.14.2 +vispy==0.14.3 # via + # partseg (pyproject.toml) # napari # napari-svg wcwidth==0.2.13 @@ -430,6 +506,8 @@ wcwidth==0.2.13 wrapt==1.16.0 # via napari xlrd==2.0.1 + # via partseg (pyproject.toml) xlsxwriter==3.2.0 -zipp==3.18.1 + # via partseg (pyproject.toml) +zipp==3.19.2 # via importlib-metadata diff --git a/requirements/constraints_py3.12.txt b/requirements/constraints_py3.12.txt index b97a22b23..45b3e4cc8 100644 --- a/requirements/constraints_py3.12.txt +++ b/requirements/constraints_py3.12.txt @@ -4,14 +4,16 @@ alabaster==0.7.16 # via sphinx altgraph==0.17.4 # via pyinstaller -annotated-types==0.6.0 +annotated-types==0.7.0 # via pydantic -app-model==0.2.6 +app-model==0.2.7 # via napari appdirs==1.4.4 # via + # partseg (pyproject.toml) # napari # npe2 + # pint asttokens==2.4.1 # via stack-data attrs==23.2.0 @@ -24,7 +26,7 @@ build==1.2.1 # via npe2 cachey==0.2.1 # via napari -certifi==2024.2.2 +certifi==2024.6.2 # via # napari # requests @@ -39,15 +41,18 @@ cloudpickle==3.0.0 # via dask comm==0.2.2 # via ipykernel -coverage==7.5.1 +coverage==7.5.3 + # via partseg (pyproject.toml) czifile==2019.7.2 -dask==2024.5.0 + # via partseg (pyproject.toml) +dask==2024.6.0 # via napari debugpy==1.8.1 # via ipykernel decorator==5.1.1 # via ipython defusedxml==0.7.1 + # via partseg (pyproject.toml) docstring-parser==0.16 # via magicgui docutils==0.21.2 @@ -56,21 +61,30 @@ et-xmlfile==1.1.0 # via openpyxl executing==2.0.1 # via stack-data +flexcache==0.3 + # via pint +flexparser==0.3.1 + # via pint fonticon-fontawesome6==6.4.0 + # via partseg (pyproject.toml) freetype-py==2.4.0 # via vispy -fsspec==2024.3.1 +fsspec==2024.6.0 # via dask h5py==3.11.0 + # via partseg (pyproject.toml) heapdict==1.0.1 # via cachey hsluv==5.0.4 # via vispy idna==3.7 # via requests -imagecodecs==2024.1.1 +imagecodecs==2024.6.1 + # via partseg (pyproject.toml) imageio==2.34.1 # via + # -r requirements/version_denylist.txt + # partseg (pyproject.toml) # napari # napari-svg # scikit-image @@ -82,10 +96,12 @@ iniconfig==2.0.0 # via pytest ipykernel==6.29.4 # via + # partseg (pyproject.toml) # napari-console # qtconsole -ipython==8.24.0 +ipython==8.25.0 # via + # partseg (pyproject.toml) # ipykernel # napari-console jedi==0.19.1 @@ -96,7 +112,7 @@ jsonschema==4.22.0 # via napari jsonschema-specifications==2023.12.1 # via jsonschema -jupyter-client==8.6.1 +jupyter-client==8.6.2 # via # ipykernel # qtconsole @@ -112,16 +128,23 @@ lazy-loader==0.4 # napari # scikit-image local-migrator==0.1.10 - # via nme + # via + # partseg (pyproject.toml) + # nme locket==1.0.0 # via partd -lxml==5.2.1 - # via lxml-html-clean +lxml==5.2.2 + # via + # partseg (pyproject.toml) + # lxml-html-clean lxml-html-clean==0.1.1 # via lxml -magicgui==0.8.2 - # via napari +magicgui==0.8.3 + # via + # partseg (pyproject.toml) + # napari mahotas==1.4.15 + # via partseg (pyproject.toml) markdown-it-py==3.0.0 # via rich markupsafe==2.1.5 @@ -135,6 +158,7 @@ mdurl==0.1.2 mpmath==1.3.0 # via sympy napari==0.4.19.post1 + # via partseg (pyproject.toml) napari-console==0.0.9 # via napari napari-plugin-engine==0.2.0 @@ -148,10 +172,14 @@ nest-asyncio==1.6.0 networkx==3.3 # via scikit-image nme==0.1.8 + # via partseg (pyproject.toml) npe2==0.7.5 - # via napari + # via + # -r requirements/version_denylist.txt + # napari numpy==1.26.4 # via + # partseg (pyproject.toml) # czifile # dask # h5py @@ -169,10 +197,13 @@ numpy==1.26.4 # vispy numpydoc==1.7.0 # via napari -oiffile==2023.8.30 -openpyxl==3.1.2 -packaging==24.0 +oiffile==2024.5.24 + # via partseg (pyproject.toml) +openpyxl==3.1.4 + # via partseg (pyproject.toml) +packaging==24.1 # via + # partseg (pyproject.toml) # build # dask # ipykernel @@ -188,13 +219,17 @@ packaging==24.0 # sphinx # vispy pandas==2.2.2 - # via napari + # via + # partseg (pyproject.toml) + # napari parso==0.8.4 # via jedi partd==1.4.2 # via dask partsegcore-compiled-backend==0.15.6 + # via partseg (pyproject.toml) partsegdata==0.10.0 + # via partseg (pyproject.toml) pexpect==4.9.0 # via ipython pillow==10.3.0 @@ -202,9 +237,9 @@ pillow==10.3.0 # imageio # napari # scikit-image -pint==0.23 +pint==0.24 # via napari -platformdirs==4.2.1 +platformdirs==4.2.2 # via # jupyter-core # pooch @@ -212,9 +247,9 @@ pluggy==1.5.0 # via # pytest # pytest-qt -pooch==1.8.1 +pooch==1.8.2 # via scikit-image -prompt-toolkit==3.0.43 +prompt-toolkit==3.0.47 # via ipython psutil==5.9.8 # via @@ -222,6 +257,7 @@ psutil==5.9.8 # napari psygnal==0.11.1 # via + # partseg (pyproject.toml) # app-model # magicgui # napari @@ -232,56 +268,75 @@ pure-eval==0.2.2 # via stack-data pyconify==0.1.6 # via superqt -pydantic==2.7.1 +pydantic==2.7.4 # via + # partseg (pyproject.toml) # app-model # napari # npe2 # pydantic-compat pydantic-compat==0.1.2 # via app-model -pydantic-core==2.18.2 +pydantic-core==2.18.4 # via pydantic pygments==2.18.0 # via + # partseg (pyproject.toml) # ipython # napari # qtconsole # rich # sphinx # superqt -pyinstaller==6.6.0 -pyinstaller-hooks-contrib==2024.5 +pyinstaller==6.8.0 + # via partseg (pyproject.toml) +pyinstaller-hooks-contrib==2024.7 # via pyinstaller pyopengl==3.1.7 # via napari pyopengl-accelerate==3.1.7 + # via partseg (pyproject.toml) pyproject-hooks==1.1.0 # via build pyqt5==5.15.10 + # via + # -r requirements/version_denylist.txt + # partseg (pyproject.toml) pyqt5-qt5==5.15.2 # via pyqt5 pyqt5-sip==12.13.0 - # via pyqt5 + # via + # -r requirements/version_denylist.txt + # pyqt5 pyqt6==6.7.0 -pyqt6-qt6==6.7.0 + # via partseg (pyproject.toml) +pyqt6-qt6==6.7.1 # via pyqt6 pyqt6-sip==13.6.0 # via pyqt6 pyside2==5.13.2 -pyside6==6.7.0 -pyside6-addons==6.7.0 + # via + # -r requirements/version_denylist.txt + # partseg (pyproject.toml) +pyside6==6.7.1 + # via + # -r requirements/version_denylist.txt + # partseg (pyproject.toml) +pyside6-addons==6.7.1 # via pyside6 -pyside6-essentials==6.7.0 +pyside6-essentials==6.7.1 # via # pyside6 # pyside6-addons -pytest==8.2.0 +pytest==8.2.2 # via + # partseg (pyproject.toml) # pytest-qt # pytest-timeout pytest-qt==4.4.0 + # via partseg (pyproject.toml) pytest-timeout==2.3.1 + # via partseg (pyproject.toml) python-dateutil==2.9.0.post0 # via # jupyter-client @@ -299,10 +354,14 @@ pyzmq==26.0.3 # jupyter-client # qtconsole qtawesome==1.3.1 + # via partseg (pyproject.toml) qtconsole==5.5.2 - # via napari-console + # via + # partseg (pyproject.toml) + # napari-console qtpy==2.4.1 # via + # partseg (pyproject.toml) # magicgui # napari # napari-console @@ -313,8 +372,9 @@ referencing==0.35.1 # via # jsonschema # jsonschema-specifications -requests==2.31.0 +requests==2.32.3 # via + # partseg (pyproject.toml) # pooch # pyconify # sphinx @@ -327,13 +387,19 @@ rpds-py==0.18.1 # jsonschema # referencing scikit-image==0.23.2 - # via napari -scipy==1.13.0 # via + # partseg (pyproject.toml) + # napari +scipy==1.13.1 + # via + # partseg (pyproject.toml) # napari # scikit-image -sentry-sdk==2.1.1 -setuptools==69.5.1 +sentry-sdk==2.5.1 + # via + # -r requirements/version_denylist.txt + # partseg (pyproject.toml) +setuptools==70.0.0 # via # pyinstaller # pyinstaller-hooks-contrib @@ -341,14 +407,16 @@ shellingham==1.5.4 # via typer shiboken2==5.13.2 # via pyside2 -shiboken6==6.7.0 +shiboken6==6.7.1 # via # pyside6 # pyside6-addons # pyside6-essentials simpleitk==2.3.1 + # via partseg (pyproject.toml) six==1.16.0 # via + # partseg (pyproject.toml) # asttokens # python-dateutil snowballstemmer==2.2.0 @@ -369,15 +437,18 @@ sphinxcontrib-serializinghtml==1.1.10 # via sphinx stack-data==0.6.3 # via ipython -superqt==0.6.5 +superqt==0.6.7 # via + # partseg (pyproject.toml) # magicgui # napari -sympy==1.12 +sympy==1.12.1 + # via partseg (pyproject.toml) tabulate==0.9.0 # via numpydoc -tifffile==2024.5.3 +tifffile==2024.5.22 # via + # partseg (pyproject.toml) # czifile # napari # oiffile @@ -389,13 +460,14 @@ toolz==0.12.1 # dask # napari # partd -tornado==6.4 +tornado==6.4.1 # via # ipykernel # jupyter-client tqdm==4.66.4 # via napari traceback-with-variables==2.0.4 + # via partseg (pyproject.toml) traitlets==5.14.3 # via # comm @@ -407,9 +479,11 @@ traitlets==5.14.3 # qtconsole typer==0.12.3 # via npe2 -typing-extensions==4.11.0 +typing-extensions==4.12.2 # via # app-model + # flexcache + # flexparser # magicgui # napari # pint @@ -419,12 +493,13 @@ typing-extensions==4.11.0 # typer tzdata==2024.1 # via pandas -urllib3==2.2.1 +urllib3==2.2.2 # via # requests # sentry-sdk -vispy==0.14.2 +vispy==0.14.3 # via + # partseg (pyproject.toml) # napari # napari-svg wcwidth==0.2.13 @@ -432,4 +507,6 @@ wcwidth==0.2.13 wrapt==1.16.0 # via napari xlrd==2.0.1 + # via partseg (pyproject.toml) xlsxwriter==3.2.0 + # via partseg (pyproject.toml) diff --git a/requirements/constraints_py3.12_pydantic_1.txt b/requirements/constraints_py3.12_pydantic_1.txt index 867e1c543..4ba9cfe1f 100644 --- a/requirements/constraints_py3.12_pydantic_1.txt +++ b/requirements/constraints_py3.12_pydantic_1.txt @@ -4,12 +4,14 @@ alabaster==0.7.16 # via sphinx altgraph==0.17.4 # via pyinstaller -app-model==0.2.6 +app-model==0.2.7 # via napari appdirs==1.4.4 # via + # partseg (pyproject.toml) # napari # npe2 + # pint asttokens==2.4.1 # via stack-data attrs==23.2.0 @@ -22,7 +24,7 @@ build==1.2.1 # via npe2 cachey==0.2.1 # via napari -certifi==2024.2.2 +certifi==2024.6.2 # via # napari # requests @@ -37,15 +39,18 @@ cloudpickle==3.0.0 # via dask comm==0.2.2 # via ipykernel -coverage==7.5.1 +coverage==7.5.3 + # via partseg (pyproject.toml) czifile==2019.7.2 -dask==2024.5.0 + # via partseg (pyproject.toml) +dask==2024.6.0 # via napari debugpy==1.8.1 # via ipykernel decorator==5.1.1 # via ipython defusedxml==0.7.1 + # via partseg (pyproject.toml) docstring-parser==0.16 # via magicgui docutils==0.21.2 @@ -54,21 +59,30 @@ et-xmlfile==1.1.0 # via openpyxl executing==2.0.1 # via stack-data +flexcache==0.3 + # via pint +flexparser==0.3.1 + # via pint fonticon-fontawesome6==6.4.0 + # via partseg (pyproject.toml) freetype-py==2.4.0 # via vispy -fsspec==2024.3.1 +fsspec==2024.6.0 # via dask h5py==3.11.0 + # via partseg (pyproject.toml) heapdict==1.0.1 # via cachey hsluv==5.0.4 # via vispy idna==3.7 # via requests -imagecodecs==2024.1.1 +imagecodecs==2024.6.1 + # via partseg (pyproject.toml) imageio==2.34.1 # via + # -r requirements/version_denylist.txt + # partseg (pyproject.toml) # napari # napari-svg # scikit-image @@ -80,10 +94,12 @@ iniconfig==2.0.0 # via pytest ipykernel==6.29.4 # via + # partseg (pyproject.toml) # napari-console # qtconsole -ipython==8.24.0 +ipython==8.25.0 # via + # partseg (pyproject.toml) # ipykernel # napari-console jedi==0.19.1 @@ -94,7 +110,7 @@ jsonschema==4.22.0 # via napari jsonschema-specifications==2023.12.1 # via jsonschema -jupyter-client==8.6.1 +jupyter-client==8.6.2 # via # ipykernel # qtconsole @@ -110,16 +126,23 @@ lazy-loader==0.4 # napari # scikit-image local-migrator==0.1.10 - # via nme + # via + # partseg (pyproject.toml) + # nme locket==1.0.0 # via partd -lxml==5.2.1 - # via lxml-html-clean +lxml==5.2.2 + # via + # partseg (pyproject.toml) + # lxml-html-clean lxml-html-clean==0.1.1 # via lxml -magicgui==0.8.2 - # via napari +magicgui==0.8.3 + # via + # partseg (pyproject.toml) + # napari mahotas==1.4.15 + # via partseg (pyproject.toml) markdown-it-py==3.0.0 # via rich markupsafe==2.1.5 @@ -133,6 +156,7 @@ mdurl==0.1.2 mpmath==1.3.0 # via sympy napari==0.4.19.post1 + # via partseg (pyproject.toml) napari-console==0.0.9 # via napari napari-plugin-engine==0.2.0 @@ -146,10 +170,14 @@ nest-asyncio==1.6.0 networkx==3.3 # via scikit-image nme==0.1.8 + # via partseg (pyproject.toml) npe2==0.7.5 - # via napari + # via + # -r requirements/version_denylist.txt + # napari numpy==1.26.4 # via + # partseg (pyproject.toml) # czifile # dask # h5py @@ -167,10 +195,13 @@ numpy==1.26.4 # vispy numpydoc==1.7.0 # via napari -oiffile==2023.8.30 -openpyxl==3.1.2 -packaging==24.0 +oiffile==2024.5.24 + # via partseg (pyproject.toml) +openpyxl==3.1.4 + # via partseg (pyproject.toml) +packaging==24.1 # via + # partseg (pyproject.toml) # build # dask # ipykernel @@ -186,13 +217,17 @@ packaging==24.0 # sphinx # vispy pandas==2.2.2 - # via napari + # via + # partseg (pyproject.toml) + # napari parso==0.8.4 # via jedi partd==1.4.2 # via dask partsegcore-compiled-backend==0.15.6 + # via partseg (pyproject.toml) partsegdata==0.10.0 + # via partseg (pyproject.toml) pexpect==4.9.0 # via ipython pillow==10.3.0 @@ -200,9 +235,9 @@ pillow==10.3.0 # imageio # napari # scikit-image -pint==0.23 +pint==0.24 # via napari -platformdirs==4.2.1 +platformdirs==4.2.2 # via # jupyter-core # pooch @@ -210,9 +245,9 @@ pluggy==1.5.0 # via # pytest # pytest-qt -pooch==1.8.1 +pooch==1.8.2 # via scikit-image -prompt-toolkit==3.0.43 +prompt-toolkit==3.0.47 # via ipython psutil==5.9.8 # via @@ -220,6 +255,7 @@ psutil==5.9.8 # napari psygnal==0.11.1 # via + # partseg (pyproject.toml) # app-model # magicgui # napari @@ -230,8 +266,10 @@ pure-eval==0.2.2 # via stack-data pyconify==0.1.6 # via superqt -pydantic==1.10.15 +pydantic==1.10.16 # via + # -c requirements/pydantic_1.txt + # partseg (pyproject.toml) # app-model # napari # npe2 @@ -240,44 +278,62 @@ pydantic-compat==0.1.2 # via app-model pygments==2.18.0 # via + # partseg (pyproject.toml) # ipython # napari # qtconsole # rich # sphinx # superqt -pyinstaller==6.6.0 -pyinstaller-hooks-contrib==2024.5 +pyinstaller==6.8.0 + # via partseg (pyproject.toml) +pyinstaller-hooks-contrib==2024.7 # via pyinstaller pyopengl==3.1.7 # via napari pyopengl-accelerate==3.1.7 + # via partseg (pyproject.toml) pyproject-hooks==1.1.0 # via build pyqt5==5.15.10 + # via + # -r requirements/version_denylist.txt + # partseg (pyproject.toml) pyqt5-qt5==5.15.2 # via pyqt5 pyqt5-sip==12.13.0 - # via pyqt5 + # via + # -r requirements/version_denylist.txt + # pyqt5 pyqt6==6.7.0 -pyqt6-qt6==6.7.0 + # via partseg (pyproject.toml) +pyqt6-qt6==6.7.1 # via pyqt6 pyqt6-sip==13.6.0 # via pyqt6 pyside2==5.13.2 -pyside6==6.7.0 -pyside6-addons==6.7.0 + # via + # -r requirements/version_denylist.txt + # partseg (pyproject.toml) +pyside6==6.7.1 + # via + # -r requirements/version_denylist.txt + # partseg (pyproject.toml) +pyside6-addons==6.7.1 # via pyside6 -pyside6-essentials==6.7.0 +pyside6-essentials==6.7.1 # via # pyside6 # pyside6-addons -pytest==8.2.0 +pytest==8.2.2 # via + # partseg (pyproject.toml) # pytest-qt # pytest-timeout pytest-qt==4.4.0 + # via partseg (pyproject.toml) pytest-timeout==2.3.1 + # via partseg (pyproject.toml) python-dateutil==2.9.0.post0 # via # jupyter-client @@ -295,10 +351,14 @@ pyzmq==26.0.3 # jupyter-client # qtconsole qtawesome==1.3.1 + # via partseg (pyproject.toml) qtconsole==5.5.2 - # via napari-console + # via + # partseg (pyproject.toml) + # napari-console qtpy==2.4.1 # via + # partseg (pyproject.toml) # magicgui # napari # napari-console @@ -309,8 +369,9 @@ referencing==0.35.1 # via # jsonschema # jsonschema-specifications -requests==2.31.0 +requests==2.32.3 # via + # partseg (pyproject.toml) # pooch # pyconify # sphinx @@ -323,13 +384,19 @@ rpds-py==0.18.1 # jsonschema # referencing scikit-image==0.23.2 - # via napari -scipy==1.13.0 # via + # partseg (pyproject.toml) + # napari +scipy==1.13.1 + # via + # partseg (pyproject.toml) # napari # scikit-image -sentry-sdk==2.1.1 -setuptools==69.5.1 +sentry-sdk==2.5.1 + # via + # -r requirements/version_denylist.txt + # partseg (pyproject.toml) +setuptools==70.0.0 # via # pyinstaller # pyinstaller-hooks-contrib @@ -337,14 +404,16 @@ shellingham==1.5.4 # via typer shiboken2==5.13.2 # via pyside2 -shiboken6==6.7.0 +shiboken6==6.7.1 # via # pyside6 # pyside6-addons # pyside6-essentials simpleitk==2.3.1 + # via partseg (pyproject.toml) six==1.16.0 # via + # partseg (pyproject.toml) # asttokens # python-dateutil snowballstemmer==2.2.0 @@ -365,15 +434,18 @@ sphinxcontrib-serializinghtml==1.1.10 # via sphinx stack-data==0.6.3 # via ipython -superqt==0.6.5 +superqt==0.6.7 # via + # partseg (pyproject.toml) # magicgui # napari -sympy==1.12 +sympy==1.12.1 + # via partseg (pyproject.toml) tabulate==0.9.0 # via numpydoc -tifffile==2024.5.3 +tifffile==2024.5.22 # via + # partseg (pyproject.toml) # czifile # napari # oiffile @@ -385,13 +457,14 @@ toolz==0.12.1 # dask # napari # partd -tornado==6.4 +tornado==6.4.1 # via # ipykernel # jupyter-client tqdm==4.66.4 # via napari traceback-with-variables==2.0.4 + # via partseg (pyproject.toml) traitlets==5.14.3 # via # comm @@ -403,9 +476,11 @@ traitlets==5.14.3 # qtconsole typer==0.12.3 # via npe2 -typing-extensions==4.11.0 +typing-extensions==4.12.2 # via # app-model + # flexcache + # flexparser # magicgui # napari # pint @@ -414,12 +489,13 @@ typing-extensions==4.11.0 # typer tzdata==2024.1 # via pandas -urllib3==2.2.1 +urllib3==2.2.2 # via # requests # sentry-sdk -vispy==0.14.2 +vispy==0.14.3 # via + # partseg (pyproject.toml) # napari # napari-svg wcwidth==0.2.13 @@ -427,4 +503,6 @@ wcwidth==0.2.13 wrapt==1.16.0 # via napari xlrd==2.0.1 + # via partseg (pyproject.toml) xlsxwriter==3.2.0 + # via partseg (pyproject.toml) diff --git a/requirements/constraints_py3.8.txt b/requirements/constraints_py3.8.txt index 2bb4486d5..16175b957 100644 --- a/requirements/constraints_py3.8.txt +++ b/requirements/constraints_py3.8.txt @@ -4,12 +4,13 @@ alabaster==0.7.13 # via sphinx altgraph==0.17.4 # via pyinstaller -annotated-types==0.6.0 +annotated-types==0.7.0 # via pydantic -app-model==0.2.6 +app-model==0.2.7 # via napari appdirs==1.4.4 # via + # partseg (pyproject.toml) # napari # npe2 asttokens==2.4.1 @@ -26,7 +27,7 @@ build==1.2.1 # via npe2 cachey==0.2.1 # via napari -certifi==2024.2.2 +certifi==2024.6.2 # via # napari # requests @@ -41,8 +42,10 @@ cloudpickle==3.0.0 # via dask comm==0.2.2 # via ipykernel -coverage==7.5.1 +coverage==7.5.3 + # via partseg (pyproject.toml) czifile==2019.7.2 + # via partseg (pyproject.toml) dask==2023.5.0 # via napari debugpy==1.8.1 @@ -50,6 +53,7 @@ debugpy==1.8.1 decorator==5.1.1 # via ipython defusedxml==0.7.1 + # via partseg (pyproject.toml) docstring-parser==0.16 # via magicgui docutils==0.20.1 @@ -61,11 +65,13 @@ exceptiongroup==1.2.1 executing==2.0.1 # via stack-data fonticon-fontawesome6==6.4.0 + # via partseg (pyproject.toml) freetype-py==2.4.0 # via vispy -fsspec==2024.3.1 +fsspec==2024.6.0 # via dask h5py==3.11.0 + # via partseg (pyproject.toml) heapdict==1.0.1 # via cachey hsluv==5.0.4 @@ -73,8 +79,11 @@ hsluv==5.0.4 idna==3.7 # via requests imagecodecs==2023.3.16 + # via partseg (pyproject.toml) imageio==2.34.1 # via + # -r requirements/version_denylist.txt + # partseg (pyproject.toml) # napari # napari-svg # scikit-image @@ -99,10 +108,12 @@ iniconfig==2.0.0 # via pytest ipykernel==6.29.4 # via + # partseg (pyproject.toml) # napari-console # qtconsole ipython==8.12.3 # via + # partseg (pyproject.toml) # ipykernel # napari-console jedi==0.19.1 @@ -113,7 +124,7 @@ jsonschema==4.22.0 # via napari jsonschema-specifications==2023.12.1 # via jsonschema -jupyter-client==8.6.1 +jupyter-client==8.6.2 # via # ipykernel # qtconsole @@ -129,16 +140,23 @@ lazy-loader==0.4 # napari # scikit-image local-migrator==0.1.10 - # via nme + # via + # partseg (pyproject.toml) + # nme locket==1.0.0 # via partd -lxml==5.2.1 - # via lxml-html-clean +lxml==5.2.2 + # via + # partseg (pyproject.toml) + # lxml-html-clean lxml-html-clean==0.1.1 # via lxml -magicgui==0.8.2 - # via napari +magicgui==0.8.3 + # via + # partseg (pyproject.toml) + # napari mahotas==1.4.15 + # via partseg (pyproject.toml) markdown-it-py==3.0.0 # via rich markupsafe==2.1.5 @@ -152,6 +170,7 @@ mdurl==0.1.2 mpmath==1.3.0 # via sympy napari==0.4.19.post1 + # via partseg (pyproject.toml) napari-console==0.0.9 # via napari napari-plugin-engine==0.2.0 @@ -165,10 +184,14 @@ nest-asyncio==1.6.0 networkx==3.1 # via scikit-image nme==0.1.8 + # via partseg (pyproject.toml) npe2==0.7.5 - # via napari + # via + # -r requirements/version_denylist.txt + # napari numpy==1.24.4 # via + # partseg (pyproject.toml) # czifile # dask # h5py @@ -188,9 +211,12 @@ numpy==1.24.4 numpydoc==1.7.0 # via napari oiffile==2022.9.29 -openpyxl==3.1.2 -packaging==24.0 + # via partseg (pyproject.toml) +openpyxl==3.1.4 + # via partseg (pyproject.toml) +packaging==24.1 # via + # partseg (pyproject.toml) # build # dask # ipykernel @@ -206,13 +232,17 @@ packaging==24.0 # sphinx # vispy pandas==2.0.3 - # via napari + # via + # partseg (pyproject.toml) + # napari parso==0.8.4 # via jedi partd==1.4.1 # via dask partsegcore-compiled-backend==0.15.1 + # via partseg (pyproject.toml) partsegdata==0.10.0 + # via partseg (pyproject.toml) pexpect==4.9.0 # via ipython pickleshare==0.7.5 @@ -226,7 +256,7 @@ pint==0.21.1 # via napari pkgutil-resolve-name==1.3.10 # via jsonschema -platformdirs==4.2.1 +platformdirs==4.2.2 # via # jupyter-core # pooch @@ -234,9 +264,9 @@ pluggy==1.5.0 # via # pytest # pytest-qt -pooch==1.8.1 +pooch==1.8.2 # via scikit-image -prompt-toolkit==3.0.43 +prompt-toolkit==3.0.47 # via ipython psutil==5.9.8 # via @@ -244,6 +274,7 @@ psutil==5.9.8 # napari psygnal==0.11.1 # via + # partseg (pyproject.toml) # app-model # magicgui # napari @@ -254,56 +285,75 @@ pure-eval==0.2.2 # via stack-data pyconify==0.1.6 # via superqt -pydantic==2.7.1 +pydantic==2.7.4 # via + # partseg (pyproject.toml) # app-model # napari # npe2 # pydantic-compat pydantic-compat==0.1.2 # via app-model -pydantic-core==2.18.2 +pydantic-core==2.18.4 # via pydantic pygments==2.18.0 # via + # partseg (pyproject.toml) # ipython # napari # qtconsole # rich # sphinx # superqt -pyinstaller==6.6.0 -pyinstaller-hooks-contrib==2024.5 +pyinstaller==6.8.0 + # via partseg (pyproject.toml) +pyinstaller-hooks-contrib==2024.7 # via pyinstaller pyopengl==3.1.7 # via napari pyopengl-accelerate==3.1.7 + # via partseg (pyproject.toml) pyproject-hooks==1.1.0 # via build pyqt5==5.15.10 + # via + # -r requirements/version_denylist.txt + # partseg (pyproject.toml) pyqt5-qt5==5.15.2 # via pyqt5 pyqt5-sip==12.13.0 - # via pyqt5 + # via + # -r requirements/version_denylist.txt + # pyqt5 pyqt6==6.7.0 -pyqt6-qt6==6.7.0 + # via partseg (pyproject.toml) +pyqt6-qt6==6.7.1 # via pyqt6 pyqt6-sip==13.6.0 # via pyqt6 pyside2==5.15.2.1 + # via + # -r requirements/version_denylist.txt + # partseg (pyproject.toml) pyside6==6.3.1 + # via + # -r requirements/version_denylist.txt + # partseg (pyproject.toml) pyside6-addons==6.3.1 # via pyside6 pyside6-essentials==6.3.1 # via # pyside6 # pyside6-addons -pytest==8.2.0 +pytest==8.2.2 # via + # partseg (pyproject.toml) # pytest-qt # pytest-timeout pytest-qt==4.4.0 + # via partseg (pyproject.toml) pytest-timeout==2.3.1 + # via partseg (pyproject.toml) python-dateutil==2.9.0.post0 # via # jupyter-client @@ -325,10 +375,14 @@ pyzmq==26.0.3 # jupyter-client # qtconsole qtawesome==1.3.1 + # via partseg (pyproject.toml) qtconsole==5.5.2 - # via napari-console + # via + # partseg (pyproject.toml) + # napari-console qtpy==2.4.1 # via + # partseg (pyproject.toml) # magicgui # napari # napari-console @@ -339,8 +393,9 @@ referencing==0.35.1 # via # jsonschema # jsonschema-specifications -requests==2.31.0 +requests==2.32.3 # via + # partseg (pyproject.toml) # pooch # pyconify # sphinx @@ -353,13 +408,19 @@ rpds-py==0.18.1 # jsonschema # referencing scikit-image==0.21.0 - # via napari + # via + # partseg (pyproject.toml) + # napari scipy==1.10.1 # via + # partseg (pyproject.toml) # napari # scikit-image -sentry-sdk==2.1.1 -setuptools==69.5.1 +sentry-sdk==2.5.1 + # via + # -r requirements/version_denylist.txt + # partseg (pyproject.toml) +setuptools==70.0.0 # via # pyinstaller # pyinstaller-hooks-contrib @@ -373,8 +434,10 @@ shiboken6==6.3.1 # pyside6-addons # pyside6-essentials simpleitk==2.3.1 + # via partseg (pyproject.toml) six==1.16.0 # via + # partseg (pyproject.toml) # asttokens # python-dateutil snowballstemmer==2.2.0 @@ -395,15 +458,18 @@ sphinxcontrib-serializinghtml==1.1.5 # via sphinx stack-data==0.6.3 # via ipython -superqt==0.6.5 +superqt==0.6.7 # via + # partseg (pyproject.toml) # magicgui # napari -sympy==1.12 +sympy==1.12.1 + # via partseg (pyproject.toml) tabulate==0.9.0 # via numpydoc tifffile==2023.7.10 # via + # partseg (pyproject.toml) # czifile # napari # oiffile @@ -421,13 +487,14 @@ toolz==0.12.1 # dask # napari # partd -tornado==6.4 +tornado==6.4.1 # via # ipykernel # jupyter-client tqdm==4.66.4 # via napari traceback-with-variables==2.0.4 + # via partseg (pyproject.toml) traitlets==5.14.3 # via # comm @@ -439,7 +506,7 @@ traitlets==5.14.3 # qtconsole typer==0.12.3 # via npe2 -typing-extensions==4.11.0 +typing-extensions==4.12.2 # via # annotated-types # app-model @@ -453,12 +520,13 @@ typing-extensions==4.11.0 # typer tzdata==2024.1 # via pandas -urllib3==2.2.1 +urllib3==2.2.2 # via # requests # sentry-sdk vispy==0.14.2 # via + # partseg (pyproject.toml) # napari # napari-svg wcwidth==0.2.13 @@ -466,8 +534,10 @@ wcwidth==0.2.13 wrapt==1.16.0 # via napari xlrd==2.0.1 + # via partseg (pyproject.toml) xlsxwriter==3.2.0 -zipp==3.18.1 + # via partseg (pyproject.toml) +zipp==3.19.2 # via # importlib-metadata # importlib-resources diff --git a/requirements/constraints_py3.8_pydantic_1.txt b/requirements/constraints_py3.8_pydantic_1.txt index 7ab776e28..1de66322b 100644 --- a/requirements/constraints_py3.8_pydantic_1.txt +++ b/requirements/constraints_py3.8_pydantic_1.txt @@ -4,10 +4,11 @@ alabaster==0.7.13 # via sphinx altgraph==0.17.4 # via pyinstaller -app-model==0.2.6 +app-model==0.2.7 # via napari appdirs==1.4.4 # via + # partseg (pyproject.toml) # napari # npe2 asttokens==2.4.1 @@ -24,7 +25,7 @@ build==1.2.1 # via npe2 cachey==0.2.1 # via napari -certifi==2024.2.2 +certifi==2024.6.2 # via # napari # requests @@ -39,8 +40,10 @@ cloudpickle==3.0.0 # via dask comm==0.2.2 # via ipykernel -coverage==7.5.1 +coverage==7.5.3 + # via partseg (pyproject.toml) czifile==2019.7.2 + # via partseg (pyproject.toml) dask==2023.5.0 # via napari debugpy==1.8.1 @@ -48,6 +51,7 @@ debugpy==1.8.1 decorator==5.1.1 # via ipython defusedxml==0.7.1 + # via partseg (pyproject.toml) docstring-parser==0.16 # via magicgui docutils==0.20.1 @@ -59,11 +63,13 @@ exceptiongroup==1.2.1 executing==2.0.1 # via stack-data fonticon-fontawesome6==6.4.0 + # via partseg (pyproject.toml) freetype-py==2.4.0 # via vispy -fsspec==2024.3.1 +fsspec==2024.6.0 # via dask h5py==3.11.0 + # via partseg (pyproject.toml) heapdict==1.0.1 # via cachey hsluv==5.0.4 @@ -71,8 +77,11 @@ hsluv==5.0.4 idna==3.7 # via requests imagecodecs==2023.3.16 + # via partseg (pyproject.toml) imageio==2.34.1 # via + # -r requirements/version_denylist.txt + # partseg (pyproject.toml) # napari # napari-svg # scikit-image @@ -97,10 +106,12 @@ iniconfig==2.0.0 # via pytest ipykernel==6.29.4 # via + # partseg (pyproject.toml) # napari-console # qtconsole ipython==8.12.3 # via + # partseg (pyproject.toml) # ipykernel # napari-console jedi==0.19.1 @@ -111,7 +122,7 @@ jsonschema==4.22.0 # via napari jsonschema-specifications==2023.12.1 # via jsonschema -jupyter-client==8.6.1 +jupyter-client==8.6.2 # via # ipykernel # qtconsole @@ -127,16 +138,23 @@ lazy-loader==0.4 # napari # scikit-image local-migrator==0.1.10 - # via nme + # via + # partseg (pyproject.toml) + # nme locket==1.0.0 # via partd -lxml==5.2.1 - # via lxml-html-clean +lxml==5.2.2 + # via + # partseg (pyproject.toml) + # lxml-html-clean lxml-html-clean==0.1.1 # via lxml -magicgui==0.8.2 - # via napari +magicgui==0.8.3 + # via + # partseg (pyproject.toml) + # napari mahotas==1.4.15 + # via partseg (pyproject.toml) markdown-it-py==3.0.0 # via rich markupsafe==2.1.5 @@ -150,6 +168,7 @@ mdurl==0.1.2 mpmath==1.3.0 # via sympy napari==0.4.19.post1 + # via partseg (pyproject.toml) napari-console==0.0.9 # via napari napari-plugin-engine==0.2.0 @@ -163,10 +182,14 @@ nest-asyncio==1.6.0 networkx==3.1 # via scikit-image nme==0.1.8 + # via partseg (pyproject.toml) npe2==0.7.5 - # via napari + # via + # -r requirements/version_denylist.txt + # napari numpy==1.24.4 # via + # partseg (pyproject.toml) # czifile # dask # h5py @@ -186,9 +209,12 @@ numpy==1.24.4 numpydoc==1.7.0 # via napari oiffile==2022.9.29 -openpyxl==3.1.2 -packaging==24.0 + # via partseg (pyproject.toml) +openpyxl==3.1.4 + # via partseg (pyproject.toml) +packaging==24.1 # via + # partseg (pyproject.toml) # build # dask # ipykernel @@ -204,13 +230,17 @@ packaging==24.0 # sphinx # vispy pandas==2.0.3 - # via napari + # via + # partseg (pyproject.toml) + # napari parso==0.8.4 # via jedi partd==1.4.1 # via dask partsegcore-compiled-backend==0.15.1 + # via partseg (pyproject.toml) partsegdata==0.10.0 + # via partseg (pyproject.toml) pexpect==4.9.0 # via ipython pickleshare==0.7.5 @@ -224,7 +254,7 @@ pint==0.21.1 # via napari pkgutil-resolve-name==1.3.10 # via jsonschema -platformdirs==4.2.1 +platformdirs==4.2.2 # via # jupyter-core # pooch @@ -232,9 +262,9 @@ pluggy==1.5.0 # via # pytest # pytest-qt -pooch==1.8.1 +pooch==1.8.2 # via scikit-image -prompt-toolkit==3.0.43 +prompt-toolkit==3.0.47 # via ipython psutil==5.9.8 # via @@ -242,6 +272,7 @@ psutil==5.9.8 # napari psygnal==0.11.1 # via + # partseg (pyproject.toml) # app-model # magicgui # napari @@ -252,8 +283,10 @@ pure-eval==0.2.2 # via stack-data pyconify==0.1.6 # via superqt -pydantic==1.10.15 +pydantic==1.10.16 # via + # -c requirements/pydantic_1.txt + # partseg (pyproject.toml) # app-model # napari # npe2 @@ -262,44 +295,62 @@ pydantic-compat==0.1.2 # via app-model pygments==2.18.0 # via + # partseg (pyproject.toml) # ipython # napari # qtconsole # rich # sphinx # superqt -pyinstaller==6.6.0 -pyinstaller-hooks-contrib==2024.5 +pyinstaller==6.8.0 + # via partseg (pyproject.toml) +pyinstaller-hooks-contrib==2024.7 # via pyinstaller pyopengl==3.1.7 # via napari pyopengl-accelerate==3.1.7 + # via partseg (pyproject.toml) pyproject-hooks==1.1.0 # via build pyqt5==5.15.10 + # via + # -r requirements/version_denylist.txt + # partseg (pyproject.toml) pyqt5-qt5==5.15.2 # via pyqt5 pyqt5-sip==12.13.0 - # via pyqt5 + # via + # -r requirements/version_denylist.txt + # pyqt5 pyqt6==6.7.0 -pyqt6-qt6==6.7.0 + # via partseg (pyproject.toml) +pyqt6-qt6==6.7.1 # via pyqt6 pyqt6-sip==13.6.0 # via pyqt6 pyside2==5.15.2.1 + # via + # -r requirements/version_denylist.txt + # partseg (pyproject.toml) pyside6==6.3.1 + # via + # -r requirements/version_denylist.txt + # partseg (pyproject.toml) pyside6-addons==6.3.1 # via pyside6 pyside6-essentials==6.3.1 # via # pyside6 # pyside6-addons -pytest==8.2.0 +pytest==8.2.2 # via + # partseg (pyproject.toml) # pytest-qt # pytest-timeout pytest-qt==4.4.0 + # via partseg (pyproject.toml) pytest-timeout==2.3.1 + # via partseg (pyproject.toml) python-dateutil==2.9.0.post0 # via # jupyter-client @@ -321,10 +372,14 @@ pyzmq==26.0.3 # jupyter-client # qtconsole qtawesome==1.3.1 + # via partseg (pyproject.toml) qtconsole==5.5.2 - # via napari-console + # via + # partseg (pyproject.toml) + # napari-console qtpy==2.4.1 # via + # partseg (pyproject.toml) # magicgui # napari # napari-console @@ -335,8 +390,9 @@ referencing==0.35.1 # via # jsonschema # jsonschema-specifications -requests==2.31.0 +requests==2.32.3 # via + # partseg (pyproject.toml) # pooch # pyconify # sphinx @@ -349,13 +405,19 @@ rpds-py==0.18.1 # jsonschema # referencing scikit-image==0.21.0 - # via napari + # via + # partseg (pyproject.toml) + # napari scipy==1.10.1 # via + # partseg (pyproject.toml) # napari # scikit-image -sentry-sdk==2.1.1 -setuptools==69.5.1 +sentry-sdk==2.5.1 + # via + # -r requirements/version_denylist.txt + # partseg (pyproject.toml) +setuptools==70.0.0 # via # pyinstaller # pyinstaller-hooks-contrib @@ -369,8 +431,10 @@ shiboken6==6.3.1 # pyside6-addons # pyside6-essentials simpleitk==2.3.1 + # via partseg (pyproject.toml) six==1.16.0 # via + # partseg (pyproject.toml) # asttokens # python-dateutil snowballstemmer==2.2.0 @@ -391,15 +455,18 @@ sphinxcontrib-serializinghtml==1.1.5 # via sphinx stack-data==0.6.3 # via ipython -superqt==0.6.5 +superqt==0.6.7 # via + # partseg (pyproject.toml) # magicgui # napari -sympy==1.12 +sympy==1.12.1 + # via partseg (pyproject.toml) tabulate==0.9.0 # via numpydoc tifffile==2023.7.10 # via + # partseg (pyproject.toml) # czifile # napari # oiffile @@ -417,13 +484,14 @@ toolz==0.12.1 # dask # napari # partd -tornado==6.4 +tornado==6.4.1 # via # ipykernel # jupyter-client tqdm==4.66.4 # via napari traceback-with-variables==2.0.4 + # via partseg (pyproject.toml) traitlets==5.14.3 # via # comm @@ -435,7 +503,7 @@ traitlets==5.14.3 # qtconsole typer==0.12.3 # via npe2 -typing-extensions==4.11.0 +typing-extensions==4.12.2 # via # app-model # ipython @@ -447,12 +515,13 @@ typing-extensions==4.11.0 # typer tzdata==2024.1 # via pandas -urllib3==2.2.1 +urllib3==2.2.2 # via # requests # sentry-sdk vispy==0.14.2 # via + # partseg (pyproject.toml) # napari # napari-svg wcwidth==0.2.13 @@ -460,8 +529,10 @@ wcwidth==0.2.13 wrapt==1.16.0 # via napari xlrd==2.0.1 + # via partseg (pyproject.toml) xlsxwriter==3.2.0 -zipp==3.18.1 + # via partseg (pyproject.toml) +zipp==3.19.2 # via # importlib-metadata # importlib-resources diff --git a/requirements/constraints_py3.9.txt b/requirements/constraints_py3.9.txt index 430d46b9b..7e92fbc55 100644 --- a/requirements/constraints_py3.9.txt +++ b/requirements/constraints_py3.9.txt @@ -4,12 +4,13 @@ alabaster==0.7.16 # via sphinx altgraph==0.17.4 # via pyinstaller -annotated-types==0.6.0 +annotated-types==0.7.0 # via pydantic -app-model==0.2.6 +app-model==0.2.7 # via napari appdirs==1.4.4 # via + # partseg (pyproject.toml) # napari # npe2 asttokens==2.4.1 @@ -24,7 +25,7 @@ build==1.2.1 # via npe2 cachey==0.2.1 # via napari -certifi==2024.2.2 +certifi==2024.6.2 # via # napari # requests @@ -39,15 +40,18 @@ cloudpickle==3.0.0 # via dask comm==0.2.2 # via ipykernel -coverage==7.5.1 +coverage==7.5.3 + # via partseg (pyproject.toml) czifile==2019.7.2 -dask==2024.5.0 + # via partseg (pyproject.toml) +dask==2024.6.0 # via napari debugpy==1.8.1 # via ipykernel decorator==5.1.1 # via ipython defusedxml==0.7.1 + # via partseg (pyproject.toml) docstring-parser==0.16 # via magicgui docutils==0.21.2 @@ -61,20 +65,25 @@ exceptiongroup==1.2.1 executing==2.0.1 # via stack-data fonticon-fontawesome6==6.4.0 + # via partseg (pyproject.toml) freetype-py==2.4.0 # via vispy -fsspec==2024.3.1 +fsspec==2024.6.0 # via dask h5py==3.11.0 + # via partseg (pyproject.toml) heapdict==1.0.1 # via cachey hsluv==5.0.4 # via vispy idna==3.7 # via requests -imagecodecs==2024.1.1 +imagecodecs==2024.6.1 + # via partseg (pyproject.toml) imageio==2.34.1 # via + # -r requirements/version_denylist.txt + # partseg (pyproject.toml) # napari # napari-svg # scikit-image @@ -94,10 +103,12 @@ iniconfig==2.0.0 # via pytest ipykernel==6.29.4 # via + # partseg (pyproject.toml) # napari-console # qtconsole ipython==8.18.1 # via + # partseg (pyproject.toml) # ipykernel # napari-console jedi==0.19.1 @@ -108,7 +119,7 @@ jsonschema==4.22.0 # via napari jsonschema-specifications==2023.12.1 # via jsonschema -jupyter-client==8.6.1 +jupyter-client==8.6.2 # via # ipykernel # qtconsole @@ -124,16 +135,23 @@ lazy-loader==0.4 # napari # scikit-image local-migrator==0.1.10 - # via nme + # via + # partseg (pyproject.toml) + # nme locket==1.0.0 # via partd -lxml==5.2.1 - # via lxml-html-clean +lxml==5.2.2 + # via + # partseg (pyproject.toml) + # lxml-html-clean lxml-html-clean==0.1.1 # via lxml -magicgui==0.8.2 - # via napari +magicgui==0.8.3 + # via + # partseg (pyproject.toml) + # napari mahotas==1.4.15 + # via partseg (pyproject.toml) markdown-it-py==3.0.0 # via rich markupsafe==2.1.5 @@ -147,6 +165,7 @@ mdurl==0.1.2 mpmath==1.3.0 # via sympy napari==0.4.19.post1 + # via partseg (pyproject.toml) napari-console==0.0.9 # via napari napari-plugin-engine==0.2.0 @@ -160,10 +179,14 @@ nest-asyncio==1.6.0 networkx==3.2.1 # via scikit-image nme==0.1.8 + # via partseg (pyproject.toml) npe2==0.7.5 - # via napari + # via + # -r requirements/version_denylist.txt + # napari numpy==1.26.4 # via + # partseg (pyproject.toml) # czifile # dask # h5py @@ -181,10 +204,13 @@ numpy==1.26.4 # vispy numpydoc==1.7.0 # via napari -oiffile==2023.8.30 -openpyxl==3.1.2 -packaging==24.0 +oiffile==2024.5.24 + # via partseg (pyproject.toml) +openpyxl==3.1.4 + # via partseg (pyproject.toml) +packaging==24.1 # via + # partseg (pyproject.toml) # build # dask # ipykernel @@ -200,13 +226,17 @@ packaging==24.0 # sphinx # vispy pandas==2.2.2 - # via napari + # via + # partseg (pyproject.toml) + # napari parso==0.8.4 # via jedi partd==1.4.2 # via dask partsegcore-compiled-backend==0.15.6 + # via partseg (pyproject.toml) partsegdata==0.10.0 + # via partseg (pyproject.toml) pexpect==4.9.0 # via ipython pillow==10.3.0 @@ -216,7 +246,7 @@ pillow==10.3.0 # scikit-image pint==0.23 # via napari -platformdirs==4.2.1 +platformdirs==4.2.2 # via # jupyter-core # pooch @@ -224,9 +254,9 @@ pluggy==1.5.0 # via # pytest # pytest-qt -pooch==1.8.1 +pooch==1.8.2 # via scikit-image -prompt-toolkit==3.0.43 +prompt-toolkit==3.0.47 # via ipython psutil==5.9.8 # via @@ -234,6 +264,7 @@ psutil==5.9.8 # napari psygnal==0.11.1 # via + # partseg (pyproject.toml) # app-model # magicgui # napari @@ -244,56 +275,75 @@ pure-eval==0.2.2 # via stack-data pyconify==0.1.6 # via superqt -pydantic==2.7.1 +pydantic==2.7.4 # via + # partseg (pyproject.toml) # app-model # napari # npe2 # pydantic-compat pydantic-compat==0.1.2 # via app-model -pydantic-core==2.18.2 +pydantic-core==2.18.4 # via pydantic pygments==2.18.0 # via + # partseg (pyproject.toml) # ipython # napari # qtconsole # rich # sphinx # superqt -pyinstaller==6.6.0 -pyinstaller-hooks-contrib==2024.5 +pyinstaller==6.8.0 + # via partseg (pyproject.toml) +pyinstaller-hooks-contrib==2024.7 # via pyinstaller pyopengl==3.1.7 # via napari pyopengl-accelerate==3.1.7 + # via partseg (pyproject.toml) pyproject-hooks==1.1.0 # via build pyqt5==5.15.10 + # via + # -r requirements/version_denylist.txt + # partseg (pyproject.toml) pyqt5-qt5==5.15.2 # via pyqt5 pyqt5-sip==12.13.0 - # via pyqt5 + # via + # -r requirements/version_denylist.txt + # pyqt5 pyqt6==6.7.0 -pyqt6-qt6==6.7.0 + # via partseg (pyproject.toml) +pyqt6-qt6==6.7.1 # via pyqt6 pyqt6-sip==13.6.0 # via pyqt6 pyside2==5.15.2.1 + # via + # -r requirements/version_denylist.txt + # partseg (pyproject.toml) pyside6==6.3.1 + # via + # -r requirements/version_denylist.txt + # partseg (pyproject.toml) pyside6-addons==6.3.1 # via pyside6 pyside6-essentials==6.3.1 # via # pyside6 # pyside6-addons -pytest==8.2.0 +pytest==8.2.2 # via + # partseg (pyproject.toml) # pytest-qt # pytest-timeout pytest-qt==4.4.0 + # via partseg (pyproject.toml) pytest-timeout==2.3.1 + # via partseg (pyproject.toml) python-dateutil==2.9.0.post0 # via # jupyter-client @@ -311,10 +361,14 @@ pyzmq==26.0.3 # jupyter-client # qtconsole qtawesome==1.3.1 + # via partseg (pyproject.toml) qtconsole==5.5.2 - # via napari-console + # via + # partseg (pyproject.toml) + # napari-console qtpy==2.4.1 # via + # partseg (pyproject.toml) # magicgui # napari # napari-console @@ -325,8 +379,9 @@ referencing==0.35.1 # via # jsonschema # jsonschema-specifications -requests==2.31.0 +requests==2.32.3 # via + # partseg (pyproject.toml) # pooch # pyconify # sphinx @@ -339,13 +394,19 @@ rpds-py==0.18.1 # jsonschema # referencing scikit-image==0.22.0 - # via napari -scipy==1.13.0 # via + # partseg (pyproject.toml) + # napari +scipy==1.13.1 + # via + # partseg (pyproject.toml) # napari # scikit-image -sentry-sdk==2.1.1 -setuptools==69.5.1 +sentry-sdk==2.5.1 + # via + # -r requirements/version_denylist.txt + # partseg (pyproject.toml) +setuptools==70.0.0 # via # pyinstaller # pyinstaller-hooks-contrib @@ -359,8 +420,10 @@ shiboken6==6.3.1 # pyside6-addons # pyside6-essentials simpleitk==2.3.1 + # via partseg (pyproject.toml) six==1.16.0 # via + # partseg (pyproject.toml) # asttokens # python-dateutil snowballstemmer==2.2.0 @@ -381,15 +444,18 @@ sphinxcontrib-serializinghtml==1.1.10 # via sphinx stack-data==0.6.3 # via ipython -superqt==0.6.5 +superqt==0.6.7 # via + # partseg (pyproject.toml) # magicgui # napari -sympy==1.12 +sympy==1.12.1 + # via partseg (pyproject.toml) tabulate==0.9.0 # via numpydoc -tifffile==2024.5.3 +tifffile==2024.5.22 # via + # partseg (pyproject.toml) # czifile # napari # oiffile @@ -408,13 +474,14 @@ toolz==0.12.1 # dask # napari # partd -tornado==6.4 +tornado==6.4.1 # via # ipykernel # jupyter-client tqdm==4.66.4 # via napari traceback-with-variables==2.0.4 + # via partseg (pyproject.toml) traitlets==5.14.3 # via # comm @@ -426,7 +493,7 @@ traitlets==5.14.3 # qtconsole typer==0.12.3 # via npe2 -typing-extensions==4.11.0 +typing-extensions==4.12.2 # via # app-model # ipython @@ -439,12 +506,13 @@ typing-extensions==4.11.0 # typer tzdata==2024.1 # via pandas -urllib3==2.2.1 +urllib3==2.2.2 # via # requests # sentry-sdk -vispy==0.14.2 +vispy==0.14.3 # via + # partseg (pyproject.toml) # napari # napari-svg wcwidth==0.2.13 @@ -452,6 +520,8 @@ wcwidth==0.2.13 wrapt==1.16.0 # via napari xlrd==2.0.1 + # via partseg (pyproject.toml) xlsxwriter==3.2.0 -zipp==3.18.1 + # via partseg (pyproject.toml) +zipp==3.19.2 # via importlib-metadata diff --git a/requirements/constraints_py3.9_pydantic_1.txt b/requirements/constraints_py3.9_pydantic_1.txt index eeba4a179..80a32cac3 100644 --- a/requirements/constraints_py3.9_pydantic_1.txt +++ b/requirements/constraints_py3.9_pydantic_1.txt @@ -4,10 +4,11 @@ alabaster==0.7.16 # via sphinx altgraph==0.17.4 # via pyinstaller -app-model==0.2.6 +app-model==0.2.7 # via napari appdirs==1.4.4 # via + # partseg (pyproject.toml) # napari # npe2 asttokens==2.4.1 @@ -22,7 +23,7 @@ build==1.2.1 # via npe2 cachey==0.2.1 # via napari -certifi==2024.2.2 +certifi==2024.6.2 # via # napari # requests @@ -37,15 +38,18 @@ cloudpickle==3.0.0 # via dask comm==0.2.2 # via ipykernel -coverage==7.5.1 +coverage==7.5.3 + # via partseg (pyproject.toml) czifile==2019.7.2 -dask==2024.5.0 + # via partseg (pyproject.toml) +dask==2024.6.0 # via napari debugpy==1.8.1 # via ipykernel decorator==5.1.1 # via ipython defusedxml==0.7.1 + # via partseg (pyproject.toml) docstring-parser==0.16 # via magicgui docutils==0.21.2 @@ -59,20 +63,25 @@ exceptiongroup==1.2.1 executing==2.0.1 # via stack-data fonticon-fontawesome6==6.4.0 + # via partseg (pyproject.toml) freetype-py==2.4.0 # via vispy -fsspec==2024.3.1 +fsspec==2024.6.0 # via dask h5py==3.11.0 + # via partseg (pyproject.toml) heapdict==1.0.1 # via cachey hsluv==5.0.4 # via vispy idna==3.7 # via requests -imagecodecs==2024.1.1 +imagecodecs==2024.6.1 + # via partseg (pyproject.toml) imageio==2.34.1 # via + # -r requirements/version_denylist.txt + # partseg (pyproject.toml) # napari # napari-svg # scikit-image @@ -92,10 +101,12 @@ iniconfig==2.0.0 # via pytest ipykernel==6.29.4 # via + # partseg (pyproject.toml) # napari-console # qtconsole ipython==8.18.1 # via + # partseg (pyproject.toml) # ipykernel # napari-console jedi==0.19.1 @@ -106,7 +117,7 @@ jsonschema==4.22.0 # via napari jsonschema-specifications==2023.12.1 # via jsonschema -jupyter-client==8.6.1 +jupyter-client==8.6.2 # via # ipykernel # qtconsole @@ -122,16 +133,23 @@ lazy-loader==0.4 # napari # scikit-image local-migrator==0.1.10 - # via nme + # via + # partseg (pyproject.toml) + # nme locket==1.0.0 # via partd -lxml==5.2.1 - # via lxml-html-clean +lxml==5.2.2 + # via + # partseg (pyproject.toml) + # lxml-html-clean lxml-html-clean==0.1.1 # via lxml -magicgui==0.8.2 - # via napari +magicgui==0.8.3 + # via + # partseg (pyproject.toml) + # napari mahotas==1.4.15 + # via partseg (pyproject.toml) markdown-it-py==3.0.0 # via rich markupsafe==2.1.5 @@ -145,6 +163,7 @@ mdurl==0.1.2 mpmath==1.3.0 # via sympy napari==0.4.19.post1 + # via partseg (pyproject.toml) napari-console==0.0.9 # via napari napari-plugin-engine==0.2.0 @@ -158,10 +177,14 @@ nest-asyncio==1.6.0 networkx==3.2.1 # via scikit-image nme==0.1.8 + # via partseg (pyproject.toml) npe2==0.7.5 - # via napari + # via + # -r requirements/version_denylist.txt + # napari numpy==1.26.4 # via + # partseg (pyproject.toml) # czifile # dask # h5py @@ -179,10 +202,13 @@ numpy==1.26.4 # vispy numpydoc==1.7.0 # via napari -oiffile==2023.8.30 -openpyxl==3.1.2 -packaging==24.0 +oiffile==2024.5.24 + # via partseg (pyproject.toml) +openpyxl==3.1.4 + # via partseg (pyproject.toml) +packaging==24.1 # via + # partseg (pyproject.toml) # build # dask # ipykernel @@ -198,13 +224,17 @@ packaging==24.0 # sphinx # vispy pandas==2.2.2 - # via napari + # via + # partseg (pyproject.toml) + # napari parso==0.8.4 # via jedi partd==1.4.2 # via dask partsegcore-compiled-backend==0.15.6 + # via partseg (pyproject.toml) partsegdata==0.10.0 + # via partseg (pyproject.toml) pexpect==4.9.0 # via ipython pillow==10.3.0 @@ -214,7 +244,7 @@ pillow==10.3.0 # scikit-image pint==0.23 # via napari -platformdirs==4.2.1 +platformdirs==4.2.2 # via # jupyter-core # pooch @@ -222,9 +252,9 @@ pluggy==1.5.0 # via # pytest # pytest-qt -pooch==1.8.1 +pooch==1.8.2 # via scikit-image -prompt-toolkit==3.0.43 +prompt-toolkit==3.0.47 # via ipython psutil==5.9.8 # via @@ -232,6 +262,7 @@ psutil==5.9.8 # napari psygnal==0.11.1 # via + # partseg (pyproject.toml) # app-model # magicgui # napari @@ -242,8 +273,10 @@ pure-eval==0.2.2 # via stack-data pyconify==0.1.6 # via superqt -pydantic==1.10.15 +pydantic==1.10.16 # via + # -c requirements/pydantic_1.txt + # partseg (pyproject.toml) # app-model # napari # npe2 @@ -252,44 +285,62 @@ pydantic-compat==0.1.2 # via app-model pygments==2.18.0 # via + # partseg (pyproject.toml) # ipython # napari # qtconsole # rich # sphinx # superqt -pyinstaller==6.6.0 -pyinstaller-hooks-contrib==2024.5 +pyinstaller==6.8.0 + # via partseg (pyproject.toml) +pyinstaller-hooks-contrib==2024.7 # via pyinstaller pyopengl==3.1.7 # via napari pyopengl-accelerate==3.1.7 + # via partseg (pyproject.toml) pyproject-hooks==1.1.0 # via build pyqt5==5.15.10 + # via + # -r requirements/version_denylist.txt + # partseg (pyproject.toml) pyqt5-qt5==5.15.2 # via pyqt5 pyqt5-sip==12.13.0 - # via pyqt5 + # via + # -r requirements/version_denylist.txt + # pyqt5 pyqt6==6.7.0 -pyqt6-qt6==6.7.0 + # via partseg (pyproject.toml) +pyqt6-qt6==6.7.1 # via pyqt6 pyqt6-sip==13.6.0 # via pyqt6 pyside2==5.15.2.1 + # via + # -r requirements/version_denylist.txt + # partseg (pyproject.toml) pyside6==6.3.1 + # via + # -r requirements/version_denylist.txt + # partseg (pyproject.toml) pyside6-addons==6.3.1 # via pyside6 pyside6-essentials==6.3.1 # via # pyside6 # pyside6-addons -pytest==8.2.0 +pytest==8.2.2 # via + # partseg (pyproject.toml) # pytest-qt # pytest-timeout pytest-qt==4.4.0 + # via partseg (pyproject.toml) pytest-timeout==2.3.1 + # via partseg (pyproject.toml) python-dateutil==2.9.0.post0 # via # jupyter-client @@ -307,10 +358,14 @@ pyzmq==26.0.3 # jupyter-client # qtconsole qtawesome==1.3.1 + # via partseg (pyproject.toml) qtconsole==5.5.2 - # via napari-console + # via + # partseg (pyproject.toml) + # napari-console qtpy==2.4.1 # via + # partseg (pyproject.toml) # magicgui # napari # napari-console @@ -321,8 +376,9 @@ referencing==0.35.1 # via # jsonschema # jsonschema-specifications -requests==2.31.0 +requests==2.32.3 # via + # partseg (pyproject.toml) # pooch # pyconify # sphinx @@ -335,13 +391,19 @@ rpds-py==0.18.1 # jsonschema # referencing scikit-image==0.22.0 - # via napari -scipy==1.13.0 # via + # partseg (pyproject.toml) + # napari +scipy==1.13.1 + # via + # partseg (pyproject.toml) # napari # scikit-image -sentry-sdk==2.1.1 -setuptools==69.5.1 +sentry-sdk==2.5.1 + # via + # -r requirements/version_denylist.txt + # partseg (pyproject.toml) +setuptools==70.0.0 # via # pyinstaller # pyinstaller-hooks-contrib @@ -355,8 +417,10 @@ shiboken6==6.3.1 # pyside6-addons # pyside6-essentials simpleitk==2.3.1 + # via partseg (pyproject.toml) six==1.16.0 # via + # partseg (pyproject.toml) # asttokens # python-dateutil snowballstemmer==2.2.0 @@ -377,15 +441,18 @@ sphinxcontrib-serializinghtml==1.1.10 # via sphinx stack-data==0.6.3 # via ipython -superqt==0.6.5 +superqt==0.6.7 # via + # partseg (pyproject.toml) # magicgui # napari -sympy==1.12 +sympy==1.12.1 + # via partseg (pyproject.toml) tabulate==0.9.0 # via numpydoc -tifffile==2024.5.3 +tifffile==2024.5.22 # via + # partseg (pyproject.toml) # czifile # napari # oiffile @@ -404,13 +471,14 @@ toolz==0.12.1 # dask # napari # partd -tornado==6.4 +tornado==6.4.1 # via # ipykernel # jupyter-client tqdm==4.66.4 # via napari traceback-with-variables==2.0.4 + # via partseg (pyproject.toml) traitlets==5.14.3 # via # comm @@ -422,7 +490,7 @@ traitlets==5.14.3 # qtconsole typer==0.12.3 # via npe2 -typing-extensions==4.11.0 +typing-extensions==4.12.2 # via # app-model # ipython @@ -434,12 +502,13 @@ typing-extensions==4.11.0 # typer tzdata==2024.1 # via pandas -urllib3==2.2.1 +urllib3==2.2.2 # via # requests # sentry-sdk -vispy==0.14.2 +vispy==0.14.3 # via + # partseg (pyproject.toml) # napari # napari-svg wcwidth==0.2.13 @@ -447,6 +516,8 @@ wcwidth==0.2.13 wrapt==1.16.0 # via napari xlrd==2.0.1 + # via partseg (pyproject.toml) xlsxwriter==3.2.0 -zipp==3.18.1 + # via partseg (pyproject.toml) +zipp==3.19.2 # via importlib-metadata