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3dem

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  1. relion relion Public

    Image-processing software for cryo-electron microscopy

    C++ 456 203

  2. relion-documents relion-documents Public

    Documentations for RELION

    TeX 12 9

  3. model-angelo model-angelo Public

    Automatic atomic model building program for cryo-EM maps

    Python 128 19

  4. DynaMight DynaMight Public

    Tool for reconstruction and analysis of continuous heterogeneity of a cryo-EM dataset

    Python 23 7

  5. topaz topaz Public

    Forked from tbepler/topaz

    Pipeline for particle picking in cryo-electron microscopy images using convolutional neural networks trained from positive and unlabeled examples. Also featuring micrograph and tomogram denoising w…

    Jupyter Notebook 7 2

  6. relion-blush relion-blush Public

    Blush refinement - For use in RELION-5

    Python 5 2

Repositories

Showing 10 of 17 repositories
  • emhub Public

    Web application for monitor EM results

    3dem/emhub’s past year of commit activity
    Python 11 GPL-3.0 4 10 2 Updated Dec 14, 2024
  • DynaMight Public

    Tool for reconstruction and analysis of continuous heterogeneity of a cryo-EM dataset

    3dem/DynaMight’s past year of commit activity
    Python 23 7 9 2 Updated Dec 10, 2024
  • relion Public

    Image-processing software for cryo-electron microscopy

    3dem/relion’s past year of commit activity
    C++ 456 GPL-2.0 203 188 (5 issues need help) 7 Updated Dec 10, 2024
  • emtools Public

    Basic utilities for CryoEM data manipulation

    3dem/emtools’s past year of commit activity
    Python 5 GPL-3.0 1 1 0 Updated Dec 3, 2024
  • relion-documents Public

    Documentations for RELION

    3dem/relion-documents’s past year of commit activity
    TeX 12 GPL-3.0 9 2 1 Updated Dec 2, 2024
  • model-angelo Public

    Automatic atomic model building program for cryo-EM maps

    3dem/model-angelo’s past year of commit activity
    Python 128 MIT 19 40 1 Updated Oct 30, 2024
  • qscore Public

    Q-score in pure Python without requiring Chimera

    3dem/qscore’s past year of commit activity
    Python 1 MIT 1 0 0 Updated Sep 6, 2024
  • em-testdata Public

    EM related files (metadata, image, etc) used for running basic tests

    3dem/em-testdata’s past year of commit activity
    Starlark 2 1 0 0 Updated Jun 24, 2024
  • relion-blush Public

    Blush refinement - For use in RELION-5

    3dem/relion-blush’s past year of commit activity
    Python 5 MIT 2 0 0 Updated May 29, 2024
  • relion-classranker Public

    RELION automatic 2D class selection

    3dem/relion-classranker’s past year of commit activity
    Python 5 GPL-3.0 1 1 0 Updated Aug 22, 2023