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Cargo.toml
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Cargo.toml
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[profile]
[profile.dev]
debug = 1
opt-level = 3
split-debuginfo = 'unpacked'
[profile.release]
codegen-units = 1
debug = 1
lto = true
[profile.test]
debug = 1
opt-level = 3
split-debuginfo = 'unpacked'
[workspace]
members = ['barcode', 'barcode_extensions', 'barcodes_folder', 'bazel_utils', 'byteseq', 'clonotype_assigner', 'cr_aggr', 'cr_ana', 'cr_bam', 'cr_h5', 'cr_lib', 'cr_types', 'cr_vdj', 'cr_websummary', 'cr_wrap', 'fast_utils', 'jibes_o3', 'json_report_derive', 'metric', 'metric_derive', 'multi', 'par_proc', 'parameters_toml', 'pyanyhow', 'slide_design', 'stats', 'tenkit2', 'transcriptome', 'tx_annotation', 'umi', 'vdj_asm_asm', 'vdj_asm_utils', 'vdj_proto', 'vdj_reference', 'websummary_build', 'websummary_derive']
resolver = '2'
[workspace.dependencies]
criterion = '0.5'
ctor = '0.2'
derive_more = '0.99'
flate2 = '1'
itertools = '0.10'
libc = '0.2'
ndarray = '0.15'
nom_locate = '4'
plotly = '0.8'
rand = '0.8'
rand_distr = '0.4'
rand_pcg = '0.3'
rayon = '1'
serde_json = '1'
shardio = '0.8'
statrs = '0.16'
strum = '0.25'
strum_macros = '0.25'
toml = '0.7'
[workspace.dependencies.align_tools]
branch = 'master'
git = 'https://github.com/10XGenomics/rust-toolbox'
[workspace.dependencies.amino]
branch = 'master'
git = 'https://github.com/10XGenomics/rust-toolbox'
[workspace.dependencies.anyhow]
features = ['backtrace']
version = '1'
[workspace.dependencies.arrayvec]
features = ['serde']
version = '0.5'
[workspace.dependencies.blas-src]
branch = 'main'
git = 'https://github.com/10XGenomics/scan-rs.git'
[workspace.dependencies.clap]
features = ['derive', 'wrap_help']
version = '4'
[workspace.dependencies.enclone_core]
branch = 'main'
git = 'https://github.com/10XGenomics/enclone_ranger'
[workspace.dependencies.enclone_proto]
branch = 'main'
git = 'https://github.com/10XGenomics/enclone_ranger'
[workspace.dependencies.enclone_ranger]
branch = 'main'
git = 'https://github.com/10XGenomics/enclone_ranger'
[workspace.dependencies.equiv]
branch = 'master'
git = 'https://github.com/10XGenomics/rust-toolbox'
[workspace.dependencies.fastq_set]
branch = 'master'
git = 'https://github.com/10XGenomics/fastq_set'
[workspace.dependencies.graph_simple]
branch = 'master'
git = 'https://github.com/10XGenomics/rust-toolbox'
[workspace.dependencies.hdf5]
branch = 'conda_nov2021'
features = ['conda']
git = 'https://github.com/10XGenomics/hdf5-rust'
[workspace.dependencies.hyperbase]
branch = 'master'
git = 'https://github.com/10XGenomics/rust-toolbox'
[workspace.dependencies.insta]
features = ['json', 'redactions', 'ron', 'yaml']
version = '1'
[workspace.dependencies.io_utils]
branch = 'master'
git = 'https://github.com/10XGenomics/rust-toolbox'
[workspace.dependencies.kmer_lookup]
branch = 'master'
git = 'https://github.com/10XGenomics/rust-toolbox'
[workspace.dependencies.martian]
branch = 'master'
git = 'https://github.com/martian-lang/martian-rust'
[workspace.dependencies.martian-derive]
branch = 'master'
git = 'https://github.com/martian-lang/martian-rust'
[workspace.dependencies.martian-filetypes]
branch = 'master'
git = 'https://github.com/martian-lang/martian-rust'
[workspace.dependencies.nom]
default-features = false
version = '7'
[workspace.dependencies.perf_stats]
branch = 'master'
git = 'https://github.com/10XGenomics/rust-toolbox'
[workspace.dependencies.pyo3]
features = ['extension-module', 'abi3-py310']
version = '0.19'
[workspace.dependencies.rust-htslib]
default-features = false
features = ['serde_feature', 'libdeflate']
version = '0.45'
[workspace.dependencies.serde]
features = ['derive']
version = '1.0'
[workspace.dependencies.stats_utils]
branch = 'master'
git = 'https://github.com/10XGenomics/rust-toolbox'
[workspace.dependencies.string_utils]
branch = 'master'
git = 'https://github.com/10XGenomics/rust-toolbox'
[workspace.dependencies.tables]
branch = 'master'
git = 'https://github.com/10XGenomics/rust-toolbox'
[workspace.dependencies.tenx-websummary]
branch = 'master'
git = 'https://github.com/10XGenomics/websummary'
[workspace.dependencies.vdj_ann]
branch = 'master'
git = 'https://github.com/10XGenomics/rust-toolbox'
[workspace.dependencies.vdj_ann_ref]
branch = 'master'
git = 'https://github.com/10XGenomics/rust-toolbox'
[workspace.dependencies.vdj_types]
branch = 'master'
git = 'https://github.com/10XGenomics/rust-toolbox'
[workspace.dependencies.vector_utils]
branch = 'master'
git = 'https://github.com/10XGenomics/rust-toolbox'