README.md

Geographic variation in the decline and recovery of freshwater insects across English river basins

fresh_eng repository

This repository contains the required R code to reproduce the analyses and plots in: 'Geographic variation in the decline and recovery of freshwater insects across English river basins'. Rob Cooke, Ellie E. Dyer, Diana Bowler, Andrew C. Johnson, Mark Logie & Nick J.B. Isaac.

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Trend analyses (Fig. 1; Fig. S1; Fig. S5; Fig. S6; Fig. S7)

See fresh_eng.R

Growth rate analyses and data availability plots (Fig. 2; Fig. S2; Fig. S3; Fig. S4; Fig. S6; Fig. S7)

See msi_growth_rates.R

Example occupancy model

example_jags_model.txt contains the JAGS code from an example occupancy model